Wall clock time and date at job start Tue Mar 31 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48503 * 109.46905 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46724 * 120.00143 * 3 2 1 7 7 C 1.38809 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99969 * 189.01536 * 7 2 1 9 9 N 1.36936 * 120.00189 * 9.01185 * 7 2 1 10 10 C 1.51687 * 127.61493 * 14.72306 * 9 7 2 11 11 C 1.54392 * 102.89795 * 140.54055 * 10 9 7 12 12 H 1.08997 * 117.61332 * 243.61973 * 11 10 9 13 13 C 1.54141 * 106.22676 * 24.11130 * 11 10 9 14 14 H 1.09002 * 121.78893 * 221.55561 * 13 11 10 15 15 C 1.48152 * 127.83673 * 195.00259 * 9 7 2 16 16 C 1.52995 * 59.75350 * 113.48698 * 13 11 10 17 17 H 1.09001 * 117.44736 * 252.37009 * 16 13 11 18 18 N 1.46503 * 117.44457 * 107.62623 * 16 13 11 19 19 C 1.34778 * 120.00211 * 135.72107 * 18 16 13 20 20 O 1.21606 * 119.99668 * 0.27794 * 19 18 16 21 21 C 1.47101 * 120.00033 * 180.27962 * 19 18 16 22 22 C 1.32076 * 118.87676 * 180.02562 * 21 19 18 23 23 C 1.50277 * 122.57695 * 180.36852 * 22 21 19 24 24 O 1.42891 * 110.09345 * 344.35426 * 23 22 21 25 25 C 1.43264 * 113.10153 * 50.52640 * 24 23 22 26 26 C 1.50427 * 118.87477 * 359.73049 * 21 19 18 27 27 H 0.97001 * 119.99985 * 0.02562 * 1 2 3 28 28 H 1.08999 * 110.49080 * 22.66922 * 10 9 7 29 29 H 1.09001 * 111.96896 * 259.09756 * 10 9 7 30 30 H 1.09006 * 110.40794 * 100.80354 * 15 9 7 31 31 H 1.08991 * 110.40839 * 338.36819 * 15 9 7 32 32 H 0.97004 * 119.99456 * 316.00182 * 18 16 13 33 33 H 1.07997 * 118.71330 * 0.34109 * 22 21 19 34 34 H 1.09005 * 109.36637 * 104.54252 * 23 22 21 35 35 H 1.09000 * 109.36572 * 224.28783 * 23 22 21 36 36 H 1.08997 * 109.64198 * 50.85689 * 25 24 23 37 37 H 1.09003 * 109.63947 * 171.47661 * 25 24 23 38 38 H 1.08998 * 109.45659 * 283.37845 * 26 21 19 39 39 H 1.08997 * 109.45346 * 43.31512 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0802 -1.2080 0.1460 9 7 1.3382 -2.3806 -0.1868 10 6 -0.0749 -2.5687 -0.7051 11 6 0.0530 -3.8123 -1.6111 12 1 -0.1437 -3.6843 -2.6755 13 6 1.2798 -4.5932 -1.1001 14 1 1.9972 -5.0470 -1.7838 15 6 1.8239 -3.7552 0.0770 16 6 -0.1226 -5.1913 -0.9720 17 1 -0.5628 -5.2309 0.0244 18 7 -0.4642 -6.3073 -1.8575 19 6 -1.1077 -7.3848 -1.3662 20 8 -1.4093 -7.4284 -0.1890 21 6 -1.4452 -8.5080 -2.2541 22 6 -2.0765 -9.5526 -1.7494 23 6 -2.4540 -10.7480 -2.5782 24 8 -2.3698 -10.4279 -3.9683 25 6 -1.1225 -9.8238 -4.3314 26 6 -1.0655 -8.4248 -3.7073 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3852 -1.7028 -1.2898 29 1 -0.7833 -2.7574 0.1015 30 1 1.4257 -4.1242 1.0222 31 1 2.9135 -3.7778 0.0879 32 1 -0.2235 -6.2724 -2.7966 33 1 -2.3309 -9.5478 -0.6998 34 1 -1.7755 -11.5714 -2.3551 35 1 -3.4749 -11.0458 -2.3389 36 1 -0.2985 -10.4307 -3.9562 37 1 -1.0571 -9.7424 -5.4164 38 1 -1.7589 -7.7630 -4.2263 39 1 -0.0531 -8.0309 -3.7960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958650406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:16 Heat of formation + Delta-G solvation = -1.155502 kcal Electronic energy + Delta-G solvation = -21121.325613 eV Core-core repulsion = 17838.231254 eV Total energy + Delta-G solvation = -3283.094359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39825 -39.17338 -38.12041 -34.49617 -33.99233 -32.58787 -31.39248 -30.15009 -27.15906 -26.63603 -25.50686 -24.16921 -22.35578 -20.96982 -20.41859 -19.23805 -18.54466 -17.78528 -16.91558 -16.70369 -16.07214 -15.58293 -15.45568 -14.77464 -14.69776 -14.16304 -13.84479 -13.61006 -13.26910 -13.06581 -12.84553 -12.71939 -12.20195 -11.88876 -11.55292 -11.46943 -11.17798 -11.01240 -10.81717 -10.46859 -10.38232 -10.22580 -10.16691 -9.76862 -9.67144 -9.42151 -9.22357 -8.74998 -8.35518 -6.88582 -5.79024 -3.12418 1.11467 3.06133 3.13608 3.39160 3.43447 3.44815 3.50196 4.29361 4.32780 4.38884 4.46698 4.48770 4.81055 4.88261 4.98464 5.11383 5.17970 5.23447 5.31057 5.34881 5.36811 5.52271 5.55057 5.77708 5.87430 5.97904 6.09781 6.16459 6.22445 6.51388 6.66628 6.67907 6.78243 6.87796 7.29513 7.50332 7.54575 7.69096 8.14539 8.22358 9.06187 9.72717 10.49367 11.35890 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049291 B = 0.003026 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.913022 B = 9252.077908 C = 9362.198928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.185 3.815 11 C -0.177 4.177 12 H 0.102 0.898 13 C -0.182 4.182 14 H 0.103 0.897 15 C 0.158 3.842 16 C 0.093 3.907 17 H 0.132 0.868 18 N -0.691 5.691 19 C 0.552 3.448 20 O -0.540 6.540 21 C -0.164 4.164 22 C -0.117 4.117 23 C 0.085 3.915 24 O -0.378 6.378 25 C 0.060 3.940 26 C -0.122 4.122 27 H 0.255 0.745 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.399 0.601 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -20.103 -9.251 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.323 5.323 10 C 0.061 3.939 11 C -0.198 4.198 12 H 0.120 0.880 13 C -0.203 4.203 14 H 0.121 0.879 15 C 0.032 3.968 16 C -0.013 4.013 17 H 0.150 0.850 18 N -0.339 5.339 19 C 0.340 3.660 20 O -0.419 6.419 21 C -0.167 4.167 22 C -0.136 4.136 23 C 0.009 3.991 24 O -0.296 6.296 25 C -0.017 4.017 26 C -0.159 4.159 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.233 0.767 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.038 -19.856 -8.505 21.813 hybrid contribution 0.839 1.018 -0.326 1.359 sum -2.199 -18.838 -8.831 20.921 Atomic orbital electron populations 1.69873 1.05043 1.25521 1.55909 1.24872 0.95646 0.97910 1.01928 0.86187 0.78525 0.82990 0.77973 1.21135 1.21550 1.21017 1.18972 0.90747 0.82435 1.43278 0.90563 1.46024 1.12026 0.99738 1.74482 1.21685 0.86394 0.92214 0.93645 1.24575 1.02277 0.92472 1.00490 0.88033 1.24366 0.90424 1.02371 1.03181 0.87947 1.21062 0.97062 0.85856 0.92860 1.21904 0.98641 0.84997 0.95729 0.85032 1.45317 1.58333 1.17801 1.12493 1.18353 0.77682 0.82324 0.87633 1.90790 1.53918 1.80360 1.16805 1.20893 1.03985 0.96021 0.95808 1.23707 0.93747 0.94227 1.01954 1.21609 1.03039 0.93981 0.80461 1.88138 1.36780 1.80786 1.23936 1.22698 0.86428 0.91928 1.00597 1.21138 1.02858 0.99607 0.92281 0.93500 0.88928 0.94982 0.95607 0.92979 0.76662 0.84524 0.90841 0.86951 0.92352 0.87988 0.89127 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.82 55.49 0.60 -26.29 16 2 C -0.01 -0.19 5.42 -17.43 -0.09 -0.28 16 3 Si 0.91 21.94 29.56 -169.99 -5.03 16.92 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.32 10.36 -15.06 -0.16 -6.48 16 8 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 9 N -0.60 -15.41 3.45 -165.82 -0.57 -15.98 16 10 C 0.19 4.45 5.92 -0.37 0.00 4.45 16 11 C -0.18 -3.33 6.96 -89.29 -0.62 -3.96 16 12 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 13 C -0.18 -3.26 7.05 -89.30 -0.63 -3.89 16 14 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 15 C 0.16 3.38 7.05 -2.40 -0.02 3.36 16 16 C 0.09 1.60 5.97 -67.93 -0.41 1.19 16 17 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 18 N -0.69 -9.55 5.51 -54.99 -0.30 -9.85 16 19 C 0.55 8.10 7.73 -12.66 -0.10 8.00 16 20 O -0.54 -10.03 15.62 5.27 0.08 -9.94 16 21 C -0.16 -1.81 5.86 -103.08 -0.60 -2.41 16 22 C -0.12 -1.16 9.58 -36.43 -0.35 -1.51 16 23 C 0.09 0.64 7.04 35.80 0.25 0.89 16 24 O -0.38 -3.43 10.83 -35.23 -0.38 -3.81 16 25 C 0.06 0.42 6.89 37.31 0.26 0.68 16 26 C -0.12 -0.97 5.31 -27.86 -0.15 -1.12 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.09 2.46 6.56 -51.93 -0.34 2.12 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.40 4.32 7.13 -40.82 -0.29 4.03 16 33 H 0.14 1.46 7.29 -52.49 -0.38 1.08 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.57 7.30 -51.93 -0.38 0.19 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -33.13 321.45 -8.92 -42.05 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.55 Total: 3.13 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.62 Total: -1.07 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.27 Total: -52.12 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.30 Total: -13.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.13 -8.92 -42.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958650406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.891 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds