Wall clock time and date at job start Tue Mar 31 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48503 * 109.46905 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46724 * 120.00143 * 3 2 1 7 7 C 1.38809 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99969 * 189.01536 * 7 2 1 9 9 N 1.36936 * 120.00189 * 9.01185 * 7 2 1 10 10 C 1.51687 * 127.61493 * 14.72306 * 9 7 2 11 11 C 1.54392 * 102.89795 * 140.54055 * 10 9 7 12 12 H 1.08997 * 117.61332 * 243.61973 * 11 10 9 13 13 C 1.54141 * 106.22676 * 24.11130 * 11 10 9 14 14 H 1.09002 * 121.78893 * 221.55561 * 13 11 10 15 15 C 1.48152 * 127.83673 * 195.00259 * 9 7 2 16 16 C 1.52995 * 59.75350 * 113.48698 * 13 11 10 17 17 H 1.09001 * 117.44736 * 252.37009 * 16 13 11 18 18 N 1.46503 * 117.44457 * 107.62623 * 16 13 11 19 19 C 1.34778 * 120.00211 * 135.72107 * 18 16 13 20 20 O 1.21606 * 119.99668 * 0.27794 * 19 18 16 21 21 C 1.47101 * 120.00033 * 180.27962 * 19 18 16 22 22 C 1.32076 * 118.87676 * 180.02562 * 21 19 18 23 23 C 1.50277 * 122.57695 * 180.36852 * 22 21 19 24 24 O 1.42891 * 110.09345 * 344.35426 * 23 22 21 25 25 C 1.43264 * 113.10153 * 50.52640 * 24 23 22 26 26 C 1.50427 * 118.87477 * 359.73049 * 21 19 18 27 27 H 0.97001 * 119.99985 * 0.02562 * 1 2 3 28 28 H 1.08999 * 110.49080 * 22.66922 * 10 9 7 29 29 H 1.09001 * 111.96896 * 259.09756 * 10 9 7 30 30 H 1.09006 * 110.40794 * 100.80354 * 15 9 7 31 31 H 1.08991 * 110.40839 * 338.36819 * 15 9 7 32 32 H 0.97004 * 119.99456 * 316.00182 * 18 16 13 33 33 H 1.07997 * 118.71330 * 0.34109 * 22 21 19 34 34 H 1.09005 * 109.36637 * 104.54252 * 23 22 21 35 35 H 1.09000 * 109.36572 * 224.28783 * 23 22 21 36 36 H 1.08997 * 109.64198 * 50.85689 * 25 24 23 37 37 H 1.09003 * 109.63947 * 171.47661 * 25 24 23 38 38 H 1.08998 * 109.45659 * 283.37845 * 26 21 19 39 39 H 1.08997 * 109.45346 * 43.31512 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0802 -1.2080 0.1460 9 7 1.3382 -2.3806 -0.1868 10 6 -0.0749 -2.5687 -0.7051 11 6 0.0530 -3.8123 -1.6111 12 1 -0.1437 -3.6843 -2.6755 13 6 1.2798 -4.5932 -1.1001 14 1 1.9972 -5.0470 -1.7838 15 6 1.8239 -3.7552 0.0770 16 6 -0.1226 -5.1913 -0.9720 17 1 -0.5628 -5.2309 0.0244 18 7 -0.4642 -6.3073 -1.8575 19 6 -1.1077 -7.3848 -1.3662 20 8 -1.4093 -7.4284 -0.1890 21 6 -1.4452 -8.5080 -2.2541 22 6 -2.0765 -9.5526 -1.7494 23 6 -2.4540 -10.7480 -2.5782 24 8 -2.3698 -10.4279 -3.9683 25 6 -1.1225 -9.8238 -4.3314 26 6 -1.0655 -8.4248 -3.7073 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3852 -1.7028 -1.2898 29 1 -0.7833 -2.7574 0.1015 30 1 1.4257 -4.1242 1.0222 31 1 2.9135 -3.7778 0.0879 32 1 -0.2235 -6.2724 -2.7966 33 1 -2.3309 -9.5478 -0.6998 34 1 -1.7755 -11.5714 -2.3551 35 1 -3.4749 -11.0458 -2.3389 36 1 -0.2985 -10.4307 -3.9562 37 1 -1.0571 -9.7424 -5.4164 38 1 -1.7589 -7.7630 -4.2263 39 1 -0.0531 -8.0309 -3.7960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958650406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:16 Heat of formation + Delta-G solvation = -24.208627 kcal Electronic energy + Delta-G solvation = -21122.325272 eV Core-core repulsion = 17838.231254 eV Total energy + Delta-G solvation = -3284.094017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45970 -40.27606 -39.38322 -36.06881 -34.95806 -34.16629 -32.22432 -31.77800 -28.94283 -27.90169 -26.94182 -24.88409 -23.73363 -22.31472 -22.00915 -20.84245 -19.49262 -18.86465 -18.58565 -17.81947 -17.02685 -16.68996 -16.48071 -16.29318 -15.76750 -15.57617 -15.05918 -14.85114 -14.64056 -14.53617 -13.83361 -13.68934 -13.44335 -13.31358 -13.24664 -12.91762 -12.68565 -12.50681 -12.20145 -12.07813 -11.88133 -11.84092 -11.66139 -11.26311 -10.88773 -10.75426 -10.57915 -10.20767 -9.73445 -8.95062 -7.91724 -5.27767 0.22895 1.46683 1.49924 1.56716 1.90182 2.04191 2.48512 2.84103 2.94157 3.28583 3.46282 3.55428 3.69461 3.78810 3.86047 3.88888 4.09345 4.26020 4.32320 4.34597 4.46034 4.47433 4.54130 4.69779 4.77726 4.83239 4.86766 4.96159 4.98277 5.22054 5.24771 5.35350 5.41507 5.44705 5.51484 5.62275 6.11019 6.12238 6.44882 6.94254 7.10692 7.64074 8.43774 9.22628 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049291 B = 0.003026 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.913022 B = 9252.077908 C = 9362.198928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.187 3.813 11 C -0.175 4.175 12 H 0.128 0.872 13 C -0.163 4.163 14 H 0.138 0.862 15 C 0.151 3.849 16 C 0.111 3.889 17 H 0.103 0.897 18 N -0.676 5.676 19 C 0.548 3.452 20 O -0.588 6.588 21 C -0.179 4.179 22 C -0.106 4.106 23 C 0.086 3.914 24 O -0.395 6.395 25 C 0.058 3.942 26 C -0.118 4.118 27 H 0.250 0.750 28 H 0.062 0.938 29 H 0.003 0.997 30 H 0.016 0.984 31 H 0.065 0.935 32 H 0.417 0.583 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 -21.864 -11.358 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.347 5.347 10 C 0.062 3.938 11 C -0.196 4.196 12 H 0.145 0.855 13 C -0.184 4.184 14 H 0.156 0.844 15 C 0.025 3.975 16 C 0.004 3.996 17 H 0.121 0.879 18 N -0.326 5.326 19 C 0.339 3.661 20 O -0.470 6.470 21 C -0.182 4.182 22 C -0.126 4.126 23 C 0.011 3.989 24 O -0.314 6.314 25 C -0.019 4.019 26 C -0.155 4.155 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.021 0.979 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.841 -21.658 -10.654 24.207 hybrid contribution 0.434 1.480 0.431 1.601 sum -1.407 -20.178 -10.224 22.664 Atomic orbital electron populations 1.70081 1.06574 1.25834 1.57261 1.25745 0.96507 1.01315 1.02175 0.85102 0.77152 0.78397 0.78352 1.20034 1.22046 1.20229 1.19396 0.91385 0.83616 1.42623 0.89910 1.46345 1.12514 1.00857 1.75001 1.21419 0.85510 0.93597 0.93233 1.24264 1.03728 0.90976 1.00660 0.85471 1.24277 0.90836 1.01488 1.01769 0.84433 1.21202 0.97918 0.84486 0.93904 1.21425 0.97958 0.85206 0.95008 0.87870 1.45098 1.58010 1.16522 1.12947 1.19023 0.76603 0.82989 0.87511 1.90771 1.55793 1.81338 1.19101 1.20888 1.05539 0.94854 0.96959 1.23954 0.92073 0.94853 1.01758 1.21781 1.04522 0.93067 0.79573 1.88124 1.37956 1.80975 1.24351 1.22883 0.86033 0.91170 1.01779 1.21204 1.03790 1.00655 0.89881 0.94104 0.91924 0.97865 0.96669 0.91663 0.74416 0.85913 0.88605 0.85334 0.91276 0.86016 0.88917 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 10.82 21.65 0.23 -57.31 16 2 C -0.06 -3.65 5.42 84.86 0.46 -3.19 16 3 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.64 10.36 84.03 0.87 -12.77 16 8 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 9 N -0.62 -32.59 3.45 -678.54 -2.34 -34.93 16 10 C 0.19 9.32 5.92 85.83 0.51 9.83 16 11 C -0.18 -6.48 6.96 -9.93 -0.07 -6.55 16 12 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 13 C -0.16 -5.53 7.05 -9.94 -0.07 -5.60 16 14 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 15 C 0.15 6.38 7.05 86.53 0.61 6.99 16 16 C 0.11 3.74 5.97 44.99 0.27 4.01 16 17 H 0.10 4.16 7.40 -2.39 -0.02 4.15 16 18 N -0.68 -17.45 5.51 -446.15 -2.46 -19.91 16 19 C 0.55 15.61 7.73 86.57 0.67 16.28 16 20 O -0.59 -22.20 15.62 -4.05 -0.06 -22.26 16 21 C -0.18 -3.64 5.86 -18.58 -0.11 -3.75 16 22 C -0.11 -1.96 9.58 24.60 0.24 -1.72 16 23 C 0.09 1.06 7.04 71.10 0.50 1.56 16 24 O -0.40 -5.98 10.83 -148.98 -1.61 -7.59 16 25 C 0.06 0.61 6.89 72.08 0.50 1.11 16 26 C -0.12 -1.52 5.31 29.86 0.16 -1.36 16 27 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.06 3.47 6.56 -2.39 -0.02 3.46 16 29 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.42 7.70 7.13 -92.70 -0.66 7.04 16 33 H 0.12 2.59 7.29 -2.91 -0.02 2.57 16 34 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 37 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 0.95 7.30 -2.39 -0.02 0.94 16 Total: -1.00 -74.35 321.45 0.72 -73.63 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.40 Total: 15.94 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.53 Total: 4.85 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.56 Total: -112.15 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.68 Total: -29.86 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.35 0.72 -73.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958650406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.426 kcal (2) G-P(sol) polarization free energy of solvation -74.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds