Wall clock time and date at job start Mon Mar 30 2020 23:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28724 * 125.31548 * 2 1 4 4 N 1.28978 * 108.98521 * 180.02562 * 3 2 1 5 5 C 1.34184 * 107.25311 * 359.97438 * 4 3 2 6 6 C 1.48011 * 126.69733 * 179.97438 * 5 4 3 7 7 O 1.21543 * 119.99538 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00250 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00197 * 180.02562 * 8 6 5 10 10 H 1.09003 * 115.51384 * 350.41219 * 9 8 6 11 11 C 1.53001 * 117.44106 * 205.00079 * 9 8 6 12 12 H 1.09002 * 119.53987 * 4.15796 * 11 9 8 13 13 C 1.54391 * 118.12276 * 159.25371 * 11 9 8 14 14 N 1.51826 * 102.86597 * 88.01620 * 13 11 9 15 15 C 1.36943 * 127.61033 * 140.54207 * 14 13 11 16 16 H 1.07994 * 119.99697 * 179.66525 * 15 14 13 17 17 C 1.38808 * 119.99940 * 359.67089 * 15 14 13 18 18 N 1.31624 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00176 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47302 * 59.99434 * 19 17 15 21 21 H 1.48499 * 109.47436 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47063 * 299.99735 * 19 17 15 23 23 C 1.48144 * 104.55308 * 320.27435 * 14 13 11 24 24 C 1.52992 * 117.40891 * 135.77194 * 9 8 6 25 25 H 1.09007 * 119.54057 * 355.89599 * 24 9 8 26 26 N 1.28865 * 125.32081 * 180.30438 * 2 1 3 27 27 H 1.08997 * 109.46825 * 89.98109 * 1 2 3 28 28 H 1.09007 * 109.47100 * 209.97802 * 1 2 3 29 29 H 1.08994 * 109.47652 * 329.97860 * 1 2 3 30 30 H 0.97005 * 119.99799 * 0.02562 * 8 6 5 31 31 H 1.08992 * 110.40800 * 207.99366 * 13 11 9 32 32 H 1.08999 * 110.40393 * 330.42441 * 13 11 9 33 33 H 0.96995 * 119.99945 * 180.02562 * 18 17 15 34 34 H 1.09002 * 110.40706 * 281.07236 * 23 14 13 35 35 H 1.09001 * 110.41178 * 158.64223 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0504 0.0000 4 7 3.4469 0.6877 -0.0005 5 6 3.4685 -0.6540 -0.0003 6 6 4.6694 -1.5192 -0.0013 7 8 4.5470 -2.7285 -0.0014 8 7 5.8984 -0.9663 -0.0020 9 6 7.0870 -1.8227 -0.0036 10 1 6.9010 -2.8842 0.1598 11 6 8.3790 -1.2368 0.5696 12 1 8.3659 -0.2435 1.0183 13 6 9.4804 -2.2157 1.0301 14 7 10.2821 -2.4440 -0.2389 15 6 11.6418 -2.5526 -0.3603 16 1 12.0855 -2.7211 -1.3304 17 6 12.4496 -2.4460 0.7634 18 7 11.9088 -2.2402 1.9456 19 14 14.3043 -2.5949 0.5979 20 1 14.8075 -1.5310 -0.3078 21 1 14.9341 -2.4465 1.9346 22 1 14.6459 -3.9262 0.0355 23 6 9.2642 -2.5292 -1.3119 24 6 8.2265 -1.4443 -0.9517 25 1 8.1000 -0.6054 -1.6362 26 7 2.2101 -1.0514 -0.0056 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8897 0.5141 30 1 5.9961 -0.0011 -0.0015 31 1 10.0800 -1.7677 1.8224 32 1 9.0385 -3.1523 1.3701 33 1 12.4734 -2.1654 2.7308 34 1 8.7980 -3.5144 -1.3162 35 1 9.7151 -2.3168 -2.2813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961530311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:06 Heat of formation + Delta-G solvation = 172.209500 kcal Electronic energy + Delta-G solvation = -20607.431588 eV Core-core repulsion = 17260.607308 eV Total energy + Delta-G solvation = -3346.824281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.71358 -39.82241 -38.20666 -35.59061 -34.46656 -33.47210 -32.66269 -30.31684 -29.15326 -27.05198 -26.14545 -25.11077 -23.39572 -22.04291 -20.86868 -20.37299 -19.19827 -18.48750 -17.93712 -17.12140 -16.85673 -16.32106 -15.00355 -14.89800 -14.58695 -14.38015 -13.90111 -13.75605 -13.59605 -13.25915 -12.72190 -12.48450 -12.20517 -11.55708 -11.46750 -11.42842 -11.34891 -11.10849 -10.82602 -10.69651 -10.44803 -10.30592 -10.20513 -10.06179 -9.66396 -9.21146 -8.80336 -8.42696 -6.91785 -5.65408 -3.09457 0.68637 1.19075 1.40626 2.65023 2.94321 3.41589 3.45498 3.46915 3.72324 3.82365 4.31857 4.34464 4.47804 4.52795 4.65450 4.94594 5.15057 5.27863 5.35880 5.41794 5.57747 5.61363 5.79508 5.91266 6.04699 6.25967 6.53675 6.67458 6.74187 6.89665 7.31686 7.35631 7.55007 7.80151 7.83084 8.01399 8.28339 9.13170 9.77376 10.48215 11.38006 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.060176 B = 0.002952 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.187006 B = 9481.391852 C = 9570.637067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.136 5.136 3 N -0.056 5.056 4 N -0.253 5.253 5 C 0.135 3.865 6 C 0.617 3.383 7 O -0.506 6.506 8 N -0.671 5.671 9 C 0.089 3.911 10 H 0.135 0.865 11 C -0.167 4.167 12 H 0.105 0.895 13 C 0.155 3.845 14 N -0.601 5.601 15 C -0.215 4.215 16 H 0.080 0.920 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.919 3.081 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.160 3.840 24 C -0.182 4.182 25 H 0.105 0.895 26 N -0.247 5.247 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.410 0.590 31 H 0.138 0.862 32 H 0.019 0.981 33 H 0.254 0.746 34 H 0.028 0.972 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.293 6.448 -3.226 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.049 5.049 3 N -0.050 5.050 4 N -0.128 5.128 5 C -0.149 4.149 6 C 0.397 3.603 7 O -0.377 6.377 8 N -0.320 5.320 9 C -0.016 4.016 10 H 0.153 0.847 11 C -0.188 4.188 12 H 0.123 0.877 13 C 0.031 3.969 14 N -0.325 5.325 15 C -0.343 4.343 16 H 0.097 0.903 17 C -0.209 4.209 18 N -0.572 5.572 19 Si 0.749 3.251 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.033 3.967 24 C -0.204 4.204 25 H 0.123 0.877 26 N -0.101 5.101 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.245 0.755 31 H 0.155 0.845 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.483 6.059 -3.106 23.491 hybrid contribution 0.880 0.238 -0.165 0.926 sum -21.603 6.297 -3.270 22.738 Atomic orbital electron populations 1.22562 0.68416 1.07296 1.06469 1.50273 1.11170 1.00683 1.42793 1.78930 0.96375 1.14031 1.15668 1.76145 1.10100 1.10173 1.16368 1.25375 0.93228 0.90227 1.06110 1.16026 0.80573 0.85734 0.78010 1.90865 1.85383 1.12710 1.48769 1.45095 1.03815 1.10829 1.72263 1.22063 0.79197 0.95371 1.04971 0.84704 1.24695 0.95118 1.02438 0.96565 0.87673 1.22587 0.88696 0.93790 0.91816 1.46123 1.01127 1.83677 1.01531 1.19067 0.79800 1.41388 0.94046 0.90261 1.24758 0.98347 1.02606 0.95196 1.69465 1.33111 1.56573 0.98036 0.86084 0.84504 0.77881 0.76621 1.21200 1.21555 1.21218 1.21093 0.88723 0.93982 0.92883 1.24432 0.98530 1.03158 0.94251 0.87657 1.75105 1.02447 1.14258 1.18322 0.87596 0.86689 0.86529 0.75465 0.84502 0.96253 0.93497 0.95403 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.62 59.85 0.70 0.94 16 2 N -0.14 -1.28 4.39 -16.65 -0.07 -1.35 16 3 N -0.06 -0.63 13.23 60.35 0.80 0.16 16 4 N -0.25 -3.34 12.26 32.10 0.39 -2.94 16 5 C 0.13 1.90 8.14 -156.24 -1.27 0.63 16 6 C 0.62 9.75 7.84 -12.26 -0.10 9.66 16 7 O -0.51 -9.52 16.66 5.33 0.09 -9.43 16 8 N -0.67 -9.88 5.56 -54.70 -0.30 -10.18 16 9 C 0.09 1.52 5.97 -67.94 -0.41 1.12 16 10 H 0.14 2.51 7.40 -51.93 -0.38 2.13 16 11 C -0.17 -3.20 6.96 -89.22 -0.62 -3.82 16 12 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 13 C 0.16 3.72 6.43 -0.29 0.00 3.72 16 14 N -0.60 -15.33 3.46 -165.71 -0.57 -15.91 16 15 C -0.21 -5.94 10.42 -15.06 -0.16 -6.10 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.92 -26.54 10.12 55.49 0.56 -25.98 16 19 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.16 3.36 7.05 -2.41 -0.02 3.35 16 24 C -0.18 -3.29 7.06 -89.22 -0.63 -3.92 16 25 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 26 N -0.25 -3.16 12.17 32.11 0.39 -2.77 16 27 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.11 0.15 8.14 -51.92 -0.42 -0.27 16 29 H 0.12 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.41 5.23 8.58 -40.82 -0.35 4.88 16 31 H 0.14 3.66 5.34 -51.93 -0.28 3.38 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -33.89 308.30 -5.63 -39.52 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -3.94 Total: 2.24 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.60 Total: 5.08 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 1.19 Total: -58.96 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.89 -5.63 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961530311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.731 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds