Wall clock time and date at job start Mon Mar 30 2020 23:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28724 * 125.31548 * 2 1 4 4 N 1.28978 * 108.98521 * 180.02562 * 3 2 1 5 5 C 1.34184 * 107.25311 * 359.97438 * 4 3 2 6 6 C 1.48011 * 126.69733 * 179.97438 * 5 4 3 7 7 O 1.21543 * 119.99538 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00250 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00197 * 180.02562 * 8 6 5 10 10 H 1.09003 * 115.51384 * 350.41219 * 9 8 6 11 11 C 1.53001 * 117.44106 * 205.00079 * 9 8 6 12 12 H 1.09002 * 119.53987 * 4.15796 * 11 9 8 13 13 C 1.54391 * 118.12276 * 159.25371 * 11 9 8 14 14 N 1.51826 * 102.86597 * 88.01620 * 13 11 9 15 15 C 1.36943 * 127.61033 * 140.54207 * 14 13 11 16 16 H 1.07994 * 119.99697 * 179.66525 * 15 14 13 17 17 C 1.38808 * 119.99940 * 359.67089 * 15 14 13 18 18 N 1.31624 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00176 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47302 * 59.99434 * 19 17 15 21 21 H 1.48499 * 109.47436 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47063 * 299.99735 * 19 17 15 23 23 C 1.48144 * 104.55308 * 320.27435 * 14 13 11 24 24 C 1.52992 * 117.40891 * 135.77194 * 9 8 6 25 25 H 1.09007 * 119.54057 * 355.89599 * 24 9 8 26 26 N 1.28865 * 125.32081 * 180.30438 * 2 1 3 27 27 H 1.08997 * 109.46825 * 89.98109 * 1 2 3 28 28 H 1.09007 * 109.47100 * 209.97802 * 1 2 3 29 29 H 1.08994 * 109.47652 * 329.97860 * 1 2 3 30 30 H 0.97005 * 119.99799 * 0.02562 * 8 6 5 31 31 H 1.08992 * 110.40800 * 207.99366 * 13 11 9 32 32 H 1.08999 * 110.40393 * 330.42441 * 13 11 9 33 33 H 0.96995 * 119.99945 * 180.02562 * 18 17 15 34 34 H 1.09002 * 110.40706 * 281.07236 * 23 14 13 35 35 H 1.09001 * 110.41178 * 158.64223 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0504 0.0000 4 7 3.4469 0.6877 -0.0005 5 6 3.4685 -0.6540 -0.0003 6 6 4.6694 -1.5192 -0.0013 7 8 4.5470 -2.7285 -0.0014 8 7 5.8984 -0.9663 -0.0020 9 6 7.0870 -1.8227 -0.0036 10 1 6.9010 -2.8842 0.1598 11 6 8.3790 -1.2368 0.5696 12 1 8.3659 -0.2435 1.0183 13 6 9.4804 -2.2157 1.0301 14 7 10.2821 -2.4440 -0.2389 15 6 11.6418 -2.5526 -0.3603 16 1 12.0855 -2.7211 -1.3304 17 6 12.4496 -2.4460 0.7634 18 7 11.9088 -2.2402 1.9456 19 14 14.3043 -2.5949 0.5979 20 1 14.8075 -1.5310 -0.3078 21 1 14.9341 -2.4465 1.9346 22 1 14.6459 -3.9262 0.0355 23 6 9.2642 -2.5292 -1.3119 24 6 8.2265 -1.4443 -0.9517 25 1 8.1000 -0.6054 -1.6362 26 7 2.2101 -1.0514 -0.0056 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8897 0.5141 30 1 5.9961 -0.0011 -0.0015 31 1 10.0800 -1.7677 1.8224 32 1 9.0385 -3.1523 1.3701 33 1 12.4734 -2.1654 2.7308 34 1 8.7980 -3.5144 -1.3162 35 1 9.7151 -2.3168 -2.2813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961530311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:05 Heat of formation + Delta-G solvation = 146.590271 kcal Electronic energy + Delta-G solvation = -20608.542521 eV Core-core repulsion = 17260.607308 eV Total energy + Delta-G solvation = -3347.935214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.59703 -41.19057 -39.73701 -36.41416 -36.03210 -34.45417 -34.31338 -32.09966 -29.81065 -28.80597 -27.77238 -26.44234 -24.24722 -23.49454 -22.17328 -22.00114 -20.79919 -19.53958 -18.87516 -18.75892 -18.00103 -17.65431 -16.71294 -16.15432 -16.10467 -15.42458 -15.28035 -14.92063 -14.56806 -14.34504 -14.14576 -13.79714 -13.25823 -13.21166 -13.09442 -13.01266 -12.68081 -12.39401 -12.29051 -12.15004 -11.98913 -11.77749 -11.72783 -11.61409 -11.52459 -10.94526 -10.68189 -9.86354 -8.93910 -7.73265 -5.20367 -0.23186 0.19034 0.73871 1.50336 1.52977 1.58178 1.59898 1.75026 2.51245 2.67028 2.83522 2.99371 3.35899 3.55210 3.82878 3.88817 3.89496 4.03533 4.15111 4.24110 4.38163 4.49210 4.55320 4.61773 4.70661 4.90964 4.94491 5.01532 5.26861 5.32038 5.47949 5.49488 5.80408 6.13647 6.29342 6.75599 6.96983 7.05004 7.72186 8.46687 9.28107 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.060176 B = 0.002952 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.187006 B = 9481.391852 C = 9570.637067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.058 5.058 4 N -0.265 5.265 5 C 0.119 3.881 6 C 0.622 3.378 7 O -0.541 6.541 8 N -0.658 5.658 9 C 0.114 3.886 10 H 0.121 0.879 11 C -0.170 4.170 12 H 0.121 0.879 13 C 0.153 3.847 14 N -0.625 5.625 15 C -0.231 4.231 16 H 0.085 0.915 17 C -0.070 4.070 18 N -0.949 5.949 19 Si 0.984 3.016 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.280 1.280 23 C 0.154 3.846 24 C -0.167 4.167 25 H 0.133 0.867 26 N -0.260 5.260 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.144 0.856 30 H 0.422 0.578 31 H 0.109 0.891 32 H 0.002 0.998 33 H 0.249 0.751 34 H 0.028 0.972 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.049 7.696 -4.279 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.029 5.029 3 N -0.052 5.052 4 N -0.139 5.139 5 C -0.165 4.165 6 C 0.403 3.597 7 O -0.415 6.415 8 N -0.308 5.308 9 C 0.007 3.993 10 H 0.138 0.862 11 C -0.191 4.191 12 H 0.139 0.861 13 C 0.029 3.971 14 N -0.349 5.349 15 C -0.359 4.359 16 H 0.103 0.897 17 C -0.262 4.262 18 N -0.599 5.599 19 Si 0.812 3.188 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.207 1.207 23 C 0.028 3.972 24 C -0.188 4.188 25 H 0.151 0.849 26 N -0.116 5.116 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.260 0.740 31 H 0.127 0.873 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.279 7.350 -4.185 25.711 hybrid contribution 1.209 -0.169 0.147 1.230 sum -23.070 7.181 -4.038 24.497 Atomic orbital electron populations 1.23302 0.64781 1.09570 1.08830 1.50844 1.12788 0.99379 1.39855 1.78860 0.96020 1.14404 1.15883 1.76109 1.11233 1.09613 1.16947 1.24894 0.93032 0.90420 1.08132 1.16155 0.81121 0.85446 0.76930 1.90847 1.85996 1.14303 1.50354 1.44864 1.02907 1.11153 1.71868 1.21625 0.79412 0.94897 1.03319 0.86170 1.24364 0.95276 1.02022 0.97449 0.86072 1.22327 0.89649 0.93897 0.91225 1.46413 1.01336 1.84026 1.03170 1.19452 0.81230 1.40857 0.94372 0.89738 1.25597 1.02564 1.02998 0.95031 1.69728 1.34130 1.57604 0.98424 0.85067 0.79418 0.78030 0.76279 1.20257 1.22026 1.20664 1.21225 0.88684 0.94971 0.92327 1.24355 0.97941 1.02720 0.93791 0.84925 1.75066 1.02312 1.15557 1.18651 0.85060 0.85016 0.83754 0.73968 0.87330 0.97975 0.94141 0.95446 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 11.62 127.77 1.49 1.62 16 2 N -0.11 -1.84 4.39 -206.58 -0.91 -2.75 16 3 N -0.06 -1.19 13.23 37.02 0.49 -0.70 16 4 N -0.26 -6.54 12.26 -52.36 -0.64 -7.19 16 5 C 0.12 3.20 8.14 137.15 1.12 4.32 16 6 C 0.62 19.17 7.84 86.84 0.68 19.85 16 7 O -0.54 -20.28 16.66 -3.85 -0.06 -20.34 16 8 N -0.66 -18.48 5.56 -445.26 -2.48 -20.96 16 9 C 0.11 3.79 5.97 44.99 0.27 4.05 16 10 H 0.12 4.48 7.40 -2.39 -0.02 4.47 16 11 C -0.17 -6.43 6.96 -9.89 -0.07 -6.50 16 12 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 13 C 0.15 7.54 6.43 85.80 0.55 8.09 16 14 N -0.62 -32.26 3.46 -678.18 -2.35 -34.60 16 15 C -0.23 -12.86 10.42 84.03 0.88 -11.98 16 16 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 17 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 18 N -0.95 -56.00 10.12 21.65 0.22 -55.78 16 19 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 C 0.15 6.37 7.05 86.53 0.61 6.98 16 24 C -0.17 -5.77 7.06 -9.89 -0.07 -5.84 16 25 H 0.13 3.92 8.14 -2.38 -0.02 3.90 16 26 N -0.26 -6.22 12.17 -52.31 -0.64 -6.85 16 27 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.14 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.42 9.95 8.58 -92.70 -0.80 9.16 16 31 H 0.11 6.04 5.34 -2.39 -0.01 6.03 16 32 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -74.47 308.30 1.92 -72.54 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.35 Total: 12.01 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.92 Total: 17.13 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -6.30 Total: -128.83 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.47 1.92 -72.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961530311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.134 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds