Wall clock time and date at job start Tue Mar 31 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 119.99974 * 2 1 4 4 H 1.48493 * 109.47449 * 265.00623 * 3 2 1 5 5 H 1.48497 * 109.46969 * 145.00106 * 3 2 1 6 6 H 1.48500 * 109.47095 * 25.00487 * 3 2 1 7 7 C 1.38818 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 189.17194 * 7 2 1 9 9 N 1.36941 * 119.99817 * 9.17236 * 7 2 1 10 10 C 1.48142 * 127.83913 * 15.57284 * 9 7 2 11 11 C 1.54790 * 104.41509 * 140.37064 * 10 9 7 12 12 H 1.08998 * 118.33444 * 244.39144 * 11 10 9 13 13 C 1.54285 * 104.92400 * 24.16506 * 11 10 9 14 14 H 1.08999 * 123.13657 * 221.44790 * 13 11 10 15 15 C 1.48144 * 127.83428 * 195.89790 * 9 7 2 16 16 C 1.52997 * 59.72323 * 113.94913 * 13 11 10 17 17 H 1.09006 * 117.44008 * 252.39969 * 16 13 11 18 18 N 1.46498 * 117.44347 * 107.65451 * 16 13 11 19 19 C 1.34779 * 120.00213 * 155.00090 * 18 16 13 20 20 O 1.21281 * 119.99593 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99831 * 180.02562 * 19 18 16 22 22 H 1.09000 * 115.51597 * 34.62804 * 21 19 18 23 23 C 1.53003 * 117.43229 * 180.02562 * 21 19 18 24 24 H 1.08998 * 119.80503 * 355.36358 * 23 21 19 25 25 C 1.54472 * 118.06786 * 198.08311 * 23 21 19 26 26 O 1.44424 * 104.80690 * 273.17202 * 25 23 21 27 27 C 1.44424 * 105.27280 * 40.51173 * 26 25 23 28 28 C 1.53006 * 117.42989 * 249.34672 * 21 19 18 29 29 H 1.08998 * 119.80691 * 4.63324 * 28 21 19 30 30 H 0.96996 * 119.99851 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.41177 * 259.19810 * 10 9 7 32 32 H 1.08997 * 110.40919 * 21.63508 * 10 9 7 33 33 H 1.09003 * 110.40812 * 338.37060 * 15 9 7 34 34 H 1.09006 * 110.41037 * 100.79826 * 15 9 7 35 35 H 0.96998 * 119.99425 * 334.99546 * 18 16 13 36 36 H 1.09006 * 110.37396 * 32.00097 * 25 23 21 37 37 H 1.08997 * 110.37526 * 154.34031 * 25 23 21 38 38 H 1.08998 * 110.37484 * 200.65849 * 27 26 25 39 39 H 1.09002 * 110.46839 * 78.36730 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6033 1.9855 -1.3947 5 1 3.4909 1.4729 0.8030 6 1 1.3988 2.6808 0.5918 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2082 0.1485 9 7 1.3387 -2.3804 -0.1901 10 6 -0.0334 -2.5700 -0.7155 11 6 0.0714 -3.8179 -1.6254 12 1 -0.1091 -3.6961 -2.6934 13 6 1.2899 -4.5985 -1.0904 14 1 2.0252 -5.0736 -1.7399 15 6 1.8171 -3.7543 0.0899 16 6 -0.1156 -5.1929 -0.9808 17 1 -0.5716 -5.2252 0.0087 18 7 -0.4455 -6.3137 -1.8646 19 6 -1.4079 -7.1891 -1.5124 20 8 -2.0011 -7.0485 -0.4640 21 6 -1.7467 -8.3423 -2.4213 22 1 -0.9081 -8.7681 -2.9722 23 6 -2.8490 -9.2998 -1.9641 24 1 -3.3008 -9.1755 -0.9800 25 6 -2.9274 -10.6902 -2.6327 26 8 -3.7381 -10.4880 -3.8107 27 6 -3.3092 -9.2208 -4.3548 28 6 -3.1062 -8.3111 -3.1226 29 1 -3.7523 -7.4401 -3.0136 30 1 -0.4850 0.8400 0.0004 31 1 -0.7318 -2.7501 0.1016 32 1 -0.3418 -1.7003 -1.2956 33 1 2.9065 -3.7790 0.1183 34 1 1.4032 -4.1165 1.0311 35 1 0.0287 -6.4257 -2.7033 36 1 -1.9313 -11.0337 -2.9119 37 1 -3.4031 -11.4069 -1.9632 38 1 -4.0781 -8.8087 -5.0083 39 1 -2.3721 -9.3373 -4.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961554780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:20 Heat of formation + Delta-G solvation = 17.645880 kcal Electronic energy + Delta-G solvation = -20994.960080 eV Core-core repulsion = 17712.681010 eV Total energy + Delta-G solvation = -3282.279070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98074 -39.47367 -38.21940 -34.87863 -34.49690 -32.65913 -30.32032 -29.09570 -27.17751 -26.75772 -25.46898 -23.02344 -21.43848 -20.99288 -20.56684 -19.99593 -19.32939 -17.74910 -16.91243 -16.49795 -16.15462 -15.74465 -15.49242 -14.80014 -14.58279 -14.39972 -13.67114 -13.40418 -13.19337 -13.00372 -12.78986 -12.27782 -12.14301 -11.93168 -11.60523 -11.50236 -11.02781 -10.85212 -10.74199 -10.63584 -10.44914 -10.23910 -10.19510 -10.04964 -9.88739 -9.75779 -9.22935 -8.77194 -8.38504 -6.89956 -5.82020 -3.16896 2.23726 2.87902 3.27588 3.37019 3.41940 3.44013 3.63701 4.12804 4.18234 4.29057 4.45067 4.48386 4.52418 4.74166 4.80714 4.95905 5.11090 5.27236 5.29262 5.32752 5.34161 5.36204 5.53522 5.65281 5.78049 5.79455 5.85485 6.08776 6.19126 6.30387 6.47711 6.64847 6.74855 6.84506 7.32483 7.49035 7.51229 7.69013 8.17803 8.18360 9.08192 9.70906 10.47689 11.32222 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050190 B = 0.002908 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.741730 B = 9624.814218 C = 9786.775284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.178 4.178 12 H 0.102 0.898 13 C -0.182 4.182 14 H 0.104 0.896 15 C 0.155 3.845 16 C 0.093 3.907 17 H 0.131 0.869 18 N -0.691 5.691 19 C 0.545 3.455 20 O -0.534 6.534 21 C -0.148 4.148 22 H 0.124 0.876 23 C -0.160 4.160 24 H 0.136 0.864 25 C 0.073 3.927 26 O -0.372 6.372 27 C 0.074 3.926 28 C -0.169 4.169 29 H 0.130 0.870 30 H 0.255 0.745 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -18.983 -8.860 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.199 4.199 12 H 0.120 0.880 13 C -0.204 4.204 14 H 0.122 0.878 15 C 0.028 3.972 16 C -0.012 4.012 17 H 0.149 0.851 18 N -0.339 5.339 19 C 0.330 3.670 20 O -0.410 6.410 21 C -0.169 4.169 22 H 0.142 0.858 23 C -0.179 4.179 24 H 0.154 0.846 25 C -0.003 4.003 26 O -0.291 6.291 27 C -0.002 4.002 28 C -0.188 4.188 29 H 0.148 0.852 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.039 -18.737 -8.138 20.824 hybrid contribution 0.965 1.014 -0.443 1.468 sum -3.074 -17.723 -8.581 19.930 Atomic orbital electron populations 1.69896 1.05072 1.25542 1.55536 1.24921 0.95657 0.98042 1.01627 0.86109 0.78651 0.83099 0.77716 1.21446 1.20573 1.21602 1.18991 0.90835 0.82287 1.43603 0.90489 1.45185 1.13503 0.99997 1.72924 1.21139 0.86910 0.92431 0.93591 1.24823 1.01799 0.92843 1.00465 0.87978 1.24292 0.90174 1.02376 1.03527 0.87815 1.21131 0.97269 0.85928 0.92860 1.21884 0.98861 0.84943 0.95538 0.85099 1.45282 1.38160 1.27020 1.23421 1.19401 0.79451 0.82089 0.86038 1.90725 1.51375 1.74354 1.24543 1.22391 0.94336 0.98356 1.01798 0.85840 1.24207 1.01657 0.91393 1.00608 0.84587 1.22957 0.95844 0.94807 0.86706 1.89200 1.60704 1.37907 1.41240 1.22949 1.00811 0.82629 0.93848 1.24217 0.97777 1.02264 0.94515 0.85238 0.93466 0.95528 0.89051 0.92903 0.95529 0.76629 0.91687 0.87974 0.87996 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.77 10.87 55.49 0.60 -26.16 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.35 10.35 -15.06 -0.16 -6.50 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 N -0.59 -15.14 3.37 -168.61 -0.57 -15.71 16 10 C 0.19 4.47 5.72 -2.20 -0.01 4.46 16 11 C -0.18 -3.34 7.08 -89.00 -0.63 -3.97 16 12 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 13 C -0.18 -3.16 7.06 -89.22 -0.63 -3.79 16 14 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.15 3.23 7.03 -2.41 -0.02 3.21 16 16 C 0.09 1.55 5.97 -67.93 -0.41 1.15 16 17 H 0.13 2.50 7.40 -51.93 -0.38 2.12 16 18 N -0.69 -8.95 5.56 -53.81 -0.30 -9.25 16 19 C 0.54 7.39 7.61 -10.99 -0.08 7.31 16 20 O -0.53 -9.52 15.91 5.56 0.09 -9.44 16 21 C -0.15 -1.40 5.74 -91.77 -0.53 -1.93 16 22 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 23 C -0.16 -1.52 6.65 -89.08 -0.59 -2.11 16 24 H 0.14 1.47 7.81 -51.93 -0.41 1.07 16 25 C 0.07 0.57 7.44 37.93 0.28 0.86 16 26 O -0.37 -3.58 11.65 -35.23 -0.41 -3.99 16 27 C 0.07 0.56 7.44 37.95 0.28 0.85 16 28 C -0.17 -1.53 6.91 -89.06 -0.62 -2.14 16 29 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 2.45 6.52 -51.93 -0.34 2.11 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.40 3.93 8.83 -40.82 -0.36 3.57 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -32.60 324.91 -9.60 -42.20 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.69 Total: 3.52 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.20 Total: -2.85 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.27 Total: -51.12 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.32 Total: -13.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.60 -9.60 -42.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961554780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.846 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds