Wall clock time and date at job start Tue Mar 31 2020 00:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 119.99974 * 2 1 4 4 H 1.48493 * 109.47449 * 265.00623 * 3 2 1 5 5 H 1.48497 * 109.46969 * 145.00106 * 3 2 1 6 6 H 1.48500 * 109.47095 * 25.00487 * 3 2 1 7 7 C 1.38818 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 189.17194 * 7 2 1 9 9 N 1.36941 * 119.99817 * 9.17236 * 7 2 1 10 10 C 1.48142 * 127.83913 * 15.57284 * 9 7 2 11 11 C 1.54790 * 104.41509 * 140.37064 * 10 9 7 12 12 H 1.08998 * 118.33444 * 244.39144 * 11 10 9 13 13 C 1.54285 * 104.92400 * 24.16506 * 11 10 9 14 14 H 1.08999 * 123.13657 * 221.44790 * 13 11 10 15 15 C 1.48144 * 127.83428 * 195.89790 * 9 7 2 16 16 C 1.52997 * 59.72323 * 113.94913 * 13 11 10 17 17 H 1.09006 * 117.44008 * 252.39969 * 16 13 11 18 18 N 1.46498 * 117.44347 * 107.65451 * 16 13 11 19 19 C 1.34779 * 120.00213 * 155.00090 * 18 16 13 20 20 O 1.21281 * 119.99593 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99831 * 180.02562 * 19 18 16 22 22 H 1.09000 * 115.51597 * 34.62804 * 21 19 18 23 23 C 1.53003 * 117.43229 * 180.02562 * 21 19 18 24 24 H 1.08998 * 119.80503 * 355.36358 * 23 21 19 25 25 C 1.54472 * 118.06786 * 198.08311 * 23 21 19 26 26 O 1.44424 * 104.80690 * 273.17202 * 25 23 21 27 27 C 1.44424 * 105.27280 * 40.51173 * 26 25 23 28 28 C 1.53006 * 117.42989 * 249.34672 * 21 19 18 29 29 H 1.08998 * 119.80691 * 4.63324 * 28 21 19 30 30 H 0.96996 * 119.99851 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.41177 * 259.19810 * 10 9 7 32 32 H 1.08997 * 110.40919 * 21.63508 * 10 9 7 33 33 H 1.09003 * 110.40812 * 338.37060 * 15 9 7 34 34 H 1.09006 * 110.41037 * 100.79826 * 15 9 7 35 35 H 0.96998 * 119.99425 * 334.99546 * 18 16 13 36 36 H 1.09006 * 110.37396 * 32.00097 * 25 23 21 37 37 H 1.08997 * 110.37526 * 154.34031 * 25 23 21 38 38 H 1.08998 * 110.37484 * 200.65849 * 27 26 25 39 39 H 1.09002 * 110.46839 * 78.36730 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6033 1.9855 -1.3947 5 1 3.4909 1.4729 0.8030 6 1 1.3988 2.6808 0.5918 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2082 0.1485 9 7 1.3387 -2.3804 -0.1901 10 6 -0.0334 -2.5700 -0.7155 11 6 0.0714 -3.8179 -1.6254 12 1 -0.1091 -3.6961 -2.6934 13 6 1.2899 -4.5985 -1.0904 14 1 2.0252 -5.0736 -1.7399 15 6 1.8171 -3.7543 0.0899 16 6 -0.1156 -5.1929 -0.9808 17 1 -0.5716 -5.2252 0.0087 18 7 -0.4455 -6.3137 -1.8646 19 6 -1.4079 -7.1891 -1.5124 20 8 -2.0011 -7.0485 -0.4640 21 6 -1.7467 -8.3423 -2.4213 22 1 -0.9081 -8.7681 -2.9722 23 6 -2.8490 -9.2998 -1.9641 24 1 -3.3008 -9.1755 -0.9800 25 6 -2.9274 -10.6902 -2.6327 26 8 -3.7381 -10.4880 -3.8107 27 6 -3.3092 -9.2208 -4.3548 28 6 -3.1062 -8.3111 -3.1226 29 1 -3.7523 -7.4401 -3.0136 30 1 -0.4850 0.8400 0.0004 31 1 -0.7318 -2.7501 0.1016 32 1 -0.3418 -1.7003 -1.2956 33 1 2.9065 -3.7790 0.1183 34 1 1.4032 -4.1165 1.0311 35 1 0.0287 -6.4257 -2.7033 36 1 -1.9313 -11.0337 -2.9119 37 1 -3.4031 -11.4069 -1.9632 38 1 -4.0781 -8.8087 -5.0083 39 1 -2.3721 -9.3373 -4.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961554780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:19 Heat of formation + Delta-G solvation = -5.087796 kcal Electronic energy + Delta-G solvation = -20995.945886 eV Core-core repulsion = 17712.681010 eV Total energy + Delta-G solvation = -3283.264876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.82075 -40.72388 -39.54793 -36.15412 -35.58133 -34.34711 -32.14254 -29.67494 -28.94250 -28.03782 -26.95064 -24.14219 -22.84427 -21.98656 -21.69669 -21.17335 -20.88363 -18.90698 -18.66693 -17.75119 -16.99535 -16.77958 -16.53641 -16.10284 -15.75743 -15.60863 -15.34359 -14.92765 -14.66563 -14.04425 -13.81565 -13.59437 -13.37673 -13.23725 -12.92488 -12.86512 -12.71612 -12.55502 -12.16960 -12.05438 -11.91111 -11.68848 -11.45549 -11.36565 -11.06273 -10.83330 -10.73267 -10.64050 -9.76460 -8.95023 -7.93430 -5.31066 1.22216 1.46299 1.48663 1.57228 1.79632 2.43594 2.48030 2.83467 3.04577 3.24784 3.35678 3.49415 3.58833 3.71174 3.81420 3.87821 3.90229 4.05776 4.10179 4.11985 4.36307 4.41964 4.47623 4.66254 4.77748 4.80996 4.82682 4.87565 4.96990 4.97759 5.05891 5.25394 5.38372 5.42525 5.50586 5.61679 5.73551 6.14376 6.45357 6.97755 7.13889 7.65172 8.43400 9.20415 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050190 B = 0.002908 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.741730 B = 9624.814218 C = 9786.775284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.984 3.016 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.296 1.296 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.189 3.811 11 C -0.183 4.183 12 H 0.124 0.876 13 C -0.156 4.156 14 H 0.145 0.855 15 C 0.146 3.854 16 C 0.113 3.887 17 H 0.102 0.898 18 N -0.674 5.674 19 C 0.541 3.459 20 O -0.583 6.583 21 C -0.136 4.136 22 H 0.162 0.838 23 C -0.171 4.171 24 H 0.114 0.886 25 C 0.078 3.922 26 O -0.392 6.392 27 C 0.077 3.923 28 C -0.167 4.167 29 H 0.116 0.884 30 H 0.250 0.750 31 H -0.007 1.007 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.018 0.982 35 H 0.421 0.579 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -20.910 -11.031 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.811 3.189 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.063 3.937 11 C -0.205 4.205 12 H 0.142 0.858 13 C -0.177 4.177 14 H 0.162 0.838 15 C 0.020 3.980 16 C 0.006 3.994 17 H 0.120 0.880 18 N -0.324 5.324 19 C 0.329 3.671 20 O -0.463 6.463 21 C -0.157 4.157 22 H 0.180 0.820 23 C -0.190 4.190 24 H 0.132 0.868 25 C 0.002 3.998 26 O -0.312 6.312 27 C 0.001 3.999 28 C -0.186 4.186 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.010 0.990 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.259 0.741 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.271 -20.712 -10.347 23.264 hybrid contribution 0.375 1.577 0.324 1.653 sum -1.896 -19.135 -10.023 21.684 Atomic orbital electron populations 1.70110 1.06691 1.25843 1.57078 1.25811 0.96492 1.01529 1.01955 0.85023 0.77545 0.78454 0.77854 1.20803 1.19160 1.22263 1.19423 0.91489 0.83439 1.42721 0.89697 1.45495 1.13820 1.01270 1.73505 1.20845 0.86081 0.93798 0.93005 1.24484 1.04067 0.91492 1.00429 0.85809 1.24208 0.90579 1.01130 1.01794 0.83777 1.21301 0.98246 0.84377 0.94031 1.21387 0.98219 0.85039 0.94772 0.88028 1.45062 1.38211 1.25502 1.23604 1.20151 0.78424 0.82665 0.85855 1.90717 1.52974 1.75615 1.26997 1.22349 0.95721 0.96499 1.01123 0.82026 1.24227 1.01757 0.92920 1.00054 0.86828 1.23052 0.96912 0.93628 0.86256 1.89185 1.61573 1.38638 1.41775 1.23092 1.02372 0.81434 0.93026 1.24267 0.96985 1.01964 0.95367 0.86581 0.94104 0.98957 0.92406 0.91355 0.96456 0.74093 0.89486 0.87181 0.86990 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.79 10.87 21.65 0.24 -57.56 16 2 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 3 Si 0.98 45.38 29.56 68.60 2.03 47.41 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.24 -13.56 10.35 84.03 0.87 -12.69 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 9 N -0.62 -32.04 3.37 -687.35 -2.32 -34.36 16 10 C 0.19 9.49 5.72 86.67 0.50 9.98 16 11 C -0.18 -6.75 7.08 -9.75 -0.07 -6.82 16 12 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 13 C -0.16 -5.05 7.06 -9.89 -0.07 -5.11 16 14 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 15 C 0.15 6.00 7.03 86.54 0.61 6.61 16 16 C 0.11 3.64 5.97 44.99 0.27 3.91 16 17 H 0.10 3.99 7.40 -2.38 -0.02 3.97 16 18 N -0.67 -15.74 5.56 -442.53 -2.46 -18.20 16 19 C 0.54 13.90 7.61 87.65 0.67 14.57 16 20 O -0.58 -21.11 15.91 -3.03 -0.05 -21.16 16 21 C -0.14 -2.21 5.74 -11.54 -0.07 -2.28 16 22 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 23 C -0.17 -2.99 6.65 -9.79 -0.07 -3.05 16 24 H 0.11 2.51 7.81 -2.39 -0.02 2.49 16 25 C 0.08 1.01 7.44 72.48 0.54 1.55 16 26 O -0.39 -6.54 11.65 -148.98 -1.74 -8.28 16 27 C 0.08 0.93 7.44 72.49 0.54 1.47 16 28 C -0.17 -2.68 6.91 -9.78 -0.07 -2.75 16 29 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.06 3.26 6.52 -2.39 -0.02 3.25 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.42 6.45 8.83 -92.71 -0.82 5.63 16 36 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -74.47 324.91 0.05 -74.42 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.24 Total: 15.55 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.11 Total: 2.17 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.55 Total: -110.12 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.78 Total: -29.43 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.47 0.05 -74.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961554780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.337 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds