Wall clock time and date at job start Tue Mar 31 2020 00:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64490 * 34.29657 * 10 9 7 12 12 C 1.55165 * 110.72000 * 271.15446 * 10 9 7 13 13 C 1.54912 * 101.58248 * 206.13624 * 12 10 9 14 14 N 1.47425 * 104.83031 * 37.00710 * 13 12 10 15 15 C 1.34782 * 125.64662 * 155.91189 * 14 13 12 16 16 O 1.21281 * 120.00062 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99936 * 359.96741 * 15 14 13 18 18 C 1.52996 * 109.47066 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47066 * 179.97438 * 18 17 15 20 20 C 1.34516 * 125.78886 * 90.00272 * 19 18 17 21 21 C 1.41385 * 106.84140 * 180.02562 * 20 19 18 22 22 C 1.34509 * 106.84175 * 359.97438 * 21 20 19 23 23 O 1.34303 * 108.42343 * 359.73882 * 22 21 20 24 24 C 1.47316 * 108.74055 * 335.71317 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.08997 * 110.99809 * 324.20743 * 12 10 9 28 28 H 1.08998 * 111.00542 * 88.05892 * 12 10 9 29 29 H 1.08990 * 110.36712 * 155.84555 * 13 12 10 30 30 H 1.09000 * 110.36204 * 278.06271 * 13 12 10 31 31 H 1.09004 * 109.47484 * 300.00904 * 17 15 14 32 32 H 1.08997 * 109.47282 * 60.00349 * 17 15 14 33 33 H 1.08997 * 109.47438 * 299.99922 * 18 17 15 34 34 H 1.08998 * 109.46865 * 60.00434 * 18 17 15 35 35 H 1.07995 * 126.57845 * 0.03192 * 20 19 18 36 36 H 1.08005 * 126.57826 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.79237 * 179.97438 * 22 21 20 38 38 H 1.08997 * 110.06928 * 241.87297 * 24 14 13 39 39 H 1.09000 * 109.84708 * 120.60976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9794 -3.5686 0.5739 12 6 2.3589 -4.1169 -1.4526 13 6 2.4687 -5.6520 -1.2756 14 7 1.4457 -5.9900 -0.2693 15 6 0.8570 -7.1934 -0.1212 16 8 0.0245 -7.3587 0.7451 17 6 1.2330 -8.3334 -1.0322 18 6 0.4245 -9.5761 -0.6545 19 6 0.8002 -10.7159 -1.5659 20 6 1.7809 -11.6096 -1.3447 21 6 1.7845 -12.4950 -2.4470 22 6 0.8054 -12.0898 -3.2755 23 8 0.2085 -11.0155 -2.7339 24 6 1.1762 -4.7964 0.5510 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.5387 -3.8586 -2.1223 28 1 3.2993 -3.6964 -1.8087 29 1 2.2567 -6.1585 -2.2170 30 1 3.4614 -5.9222 -0.9153 31 1 1.0170 -8.0597 -2.0650 32 1 2.2969 -8.5461 -0.9279 33 1 0.6403 -9.8499 0.3782 34 1 -0.6393 -9.3631 -0.7593 35 1 2.4391 -11.6442 -0.4893 36 1 2.4459 -13.3360 -2.5949 37 1 0.5412 -12.5524 -4.2150 38 1 1.4330 -4.9923 1.5921 39 1 0.1241 -4.5227 0.4718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966910765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:38 Heat of formation + Delta-G solvation = -10.083851 kcal Electronic energy + Delta-G solvation = -20792.958483 eV Core-core repulsion = 17509.476962 eV Total energy + Delta-G solvation = -3283.481521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.79621 -39.92139 -37.52169 -34.44947 -34.25023 -33.02223 -31.62107 -29.53063 -29.27833 -27.53310 -24.82087 -23.31079 -22.71718 -21.99078 -20.62097 -20.23048 -19.09510 -17.76400 -17.59145 -16.84065 -16.28749 -16.13864 -15.38561 -15.00334 -14.83216 -14.22284 -13.75148 -13.62483 -13.34189 -13.07330 -12.94382 -12.87030 -12.62927 -12.36898 -12.27186 -11.89286 -11.77152 -11.32027 -11.11384 -10.77298 -10.64715 -10.35078 -10.17743 -10.05748 -9.82335 -9.26499 -9.00384 -8.70047 -8.51115 -7.14838 -6.17759 -3.19895 1.47019 2.35551 2.67363 2.71777 3.11205 3.48235 3.52796 3.66798 4.30423 4.60604 4.64472 4.72043 4.76529 4.80399 4.93543 4.94616 5.20667 5.22269 5.31931 5.45876 5.47440 5.54788 5.56674 5.67709 5.70790 5.74840 5.84915 5.91709 5.94919 6.12919 6.25171 6.26302 6.44472 6.49483 6.78182 6.90237 7.62414 7.73119 8.20642 8.67442 9.11762 9.98319 10.11704 11.30193 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046905 B = 0.002749 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.805730 B =10183.918457 C =10363.403651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.084 2.916 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.066 0.934 12 C -0.154 4.154 13 C 0.098 3.902 14 N -0.613 5.613 15 C 0.525 3.475 16 O -0.547 6.547 17 C -0.132 4.132 18 C -0.025 4.025 19 C -0.006 4.006 20 C -0.212 4.212 21 C -0.214 4.214 22 C -0.046 4.046 23 O -0.175 6.175 24 C 0.100 3.900 25 H 0.256 0.744 26 H 0.369 0.631 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.067 0.933 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -22.819 -5.954 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.468 4.468 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.195 4.195 13 C -0.025 4.025 14 N -0.347 5.347 15 C 0.314 3.686 16 O -0.425 6.425 17 C -0.172 4.172 18 C -0.063 4.063 19 C -0.056 4.056 20 C -0.231 4.231 21 C -0.233 4.233 22 C -0.113 4.113 23 O -0.071 6.071 24 C -0.023 4.023 25 H 0.068 0.932 26 H 0.203 0.797 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.218 0.782 38 H 0.085 0.915 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.127 -21.096 -5.587 22.418 hybrid contribution 0.233 -1.952 -0.158 1.973 sum 5.359 -23.049 -5.744 24.351 Atomic orbital electron populations 1.70853 1.06103 1.28611 1.52953 1.25831 0.97024 1.01123 1.00043 0.83183 0.73857 0.75200 0.76313 1.22210 1.22073 1.21339 1.20044 0.92072 0.85457 1.49183 0.91480 1.42380 1.04843 1.00397 1.89297 1.21125 0.94285 0.85196 0.92912 0.91564 1.23545 1.02788 0.91701 1.01502 1.22414 0.91124 0.97784 0.91226 1.48571 1.40967 1.10370 1.34776 1.20169 0.81040 0.82537 0.84853 1.90709 1.33382 1.82715 1.35682 1.21623 1.02190 0.92878 1.00466 1.19863 1.01787 0.88249 0.96370 1.22501 0.96095 0.99858 0.87173 1.21632 1.02023 0.97728 1.01720 1.21842 1.02257 1.03185 0.96039 1.24034 0.96818 0.89888 1.00577 1.84044 1.51420 1.40686 1.30999 1.22372 1.00951 0.84484 0.94534 0.93234 0.79698 0.90787 0.90410 0.91183 0.91452 0.88580 0.88497 0.87937 0.89143 0.83434 0.83523 0.78196 0.91502 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.75 13.70 55.49 0.76 -27.99 16 2 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 3 Si 1.08 25.40 29.92 -169.99 -5.09 20.31 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.34 -9.15 9.97 -15.06 -0.15 -9.30 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -17.65 5.23 -51.65 -0.27 -17.92 16 10 C 0.18 3.36 3.59 -66.09 -0.24 3.12 16 11 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 12 C -0.15 -2.47 6.77 -24.58 -0.17 -2.63 16 13 C 0.10 1.22 6.69 -2.53 -0.02 1.21 16 14 N -0.61 -9.18 3.33 -170.28 -0.57 -9.75 16 15 C 0.53 7.72 7.85 -10.98 -0.09 7.63 16 16 O -0.55 -9.96 16.31 5.56 0.09 -9.87 16 17 C -0.13 -1.37 4.69 -27.89 -0.13 -1.50 16 18 C -0.03 -0.26 5.04 -27.89 -0.14 -0.40 16 19 C -0.01 -0.06 6.58 -35.63 -0.23 -0.30 16 20 C -0.21 -2.00 10.81 -39.70 -0.43 -2.43 16 21 C -0.21 -1.80 10.91 -39.70 -0.43 -2.23 16 22 C -0.05 -0.38 12.09 29.41 0.36 -0.02 16 23 O -0.18 -1.89 10.65 5.68 0.06 -1.83 16 24 C 0.10 1.76 6.64 -2.90 -0.02 1.74 16 25 H 0.26 7.73 6.77 -40.82 -0.28 7.46 16 26 H 0.37 9.38 6.37 -40.82 -0.26 9.12 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.93 7.85 -51.93 -0.41 0.52 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.32 7.70 -51.93 -0.40 0.92 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -33.30 330.76 -7.40 -40.70 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.58 Total: 7.78 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.78 Total: -6.42 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.08 Total: -55.66 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.15 Total: -11.70 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.31 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.30 -7.40 -40.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966910765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.612 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds