Wall clock time and date at job start Tue Mar 31 2020 00:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64490 * 34.29657 * 10 9 7 12 12 C 1.55165 * 110.72000 * 271.15446 * 10 9 7 13 13 C 1.54912 * 101.58248 * 206.13624 * 12 10 9 14 14 N 1.47425 * 104.83031 * 37.00710 * 13 12 10 15 15 C 1.34782 * 125.64662 * 155.91189 * 14 13 12 16 16 O 1.21281 * 120.00062 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99936 * 359.96741 * 15 14 13 18 18 C 1.52996 * 109.47066 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47066 * 179.97438 * 18 17 15 20 20 C 1.34516 * 125.78886 * 90.00272 * 19 18 17 21 21 C 1.41385 * 106.84140 * 180.02562 * 20 19 18 22 22 C 1.34509 * 106.84175 * 359.97438 * 21 20 19 23 23 O 1.34303 * 108.42343 * 359.73882 * 22 21 20 24 24 C 1.47316 * 108.74055 * 335.71317 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.08997 * 110.99809 * 324.20743 * 12 10 9 28 28 H 1.08998 * 111.00542 * 88.05892 * 12 10 9 29 29 H 1.08990 * 110.36712 * 155.84555 * 13 12 10 30 30 H 1.09000 * 110.36204 * 278.06271 * 13 12 10 31 31 H 1.09004 * 109.47484 * 300.00904 * 17 15 14 32 32 H 1.08997 * 109.47282 * 60.00349 * 17 15 14 33 33 H 1.08997 * 109.47438 * 299.99922 * 18 17 15 34 34 H 1.08998 * 109.46865 * 60.00434 * 18 17 15 35 35 H 1.07995 * 126.57845 * 0.03192 * 20 19 18 36 36 H 1.08005 * 126.57826 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.79237 * 179.97438 * 22 21 20 38 38 H 1.08997 * 110.06928 * 241.87297 * 24 14 13 39 39 H 1.09000 * 109.84708 * 120.60976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9794 -3.5686 0.5739 12 6 2.3589 -4.1169 -1.4526 13 6 2.4687 -5.6520 -1.2756 14 7 1.4457 -5.9900 -0.2693 15 6 0.8570 -7.1934 -0.1212 16 8 0.0245 -7.3587 0.7451 17 6 1.2330 -8.3334 -1.0322 18 6 0.4245 -9.5761 -0.6545 19 6 0.8002 -10.7159 -1.5659 20 6 1.7809 -11.6096 -1.3447 21 6 1.7845 -12.4950 -2.4470 22 6 0.8054 -12.0898 -3.2755 23 8 0.2085 -11.0155 -2.7339 24 6 1.1762 -4.7964 0.5510 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.5387 -3.8586 -2.1223 28 1 3.2993 -3.6964 -1.8087 29 1 2.2567 -6.1585 -2.2170 30 1 3.4614 -5.9222 -0.9153 31 1 1.0170 -8.0597 -2.0650 32 1 2.2969 -8.5461 -0.9279 33 1 0.6403 -9.8499 0.3782 34 1 -0.6393 -9.3631 -0.7593 35 1 2.4391 -11.6442 -0.4893 36 1 2.4459 -13.3360 -2.5949 37 1 0.5412 -12.5524 -4.2150 38 1 1.4330 -4.9923 1.5921 39 1 0.1241 -4.5227 0.4718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966910765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:35 Heat of formation + Delta-G solvation = -31.690016 kcal Electronic energy + Delta-G solvation = -20793.895397 eV Core-core repulsion = 17509.476962 eV Total energy + Delta-G solvation = -3284.418435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.47194 -41.15537 -38.89885 -36.26283 -35.11800 -33.73060 -33.30293 -30.99718 -30.23901 -28.89106 -26.03543 -25.11155 -23.87444 -22.64495 -21.79384 -21.26401 -20.24782 -19.55379 -18.61248 -17.79406 -17.44391 -17.04993 -16.73229 -16.39510 -16.09665 -15.61823 -15.22625 -14.76220 -14.68297 -14.27998 -13.78219 -13.70685 -13.54082 -13.45256 -13.33936 -13.23913 -12.95749 -12.79313 -12.45373 -12.41490 -12.12069 -11.86200 -11.80883 -11.31461 -11.04763 -10.95026 -10.82172 -9.77007 -9.37313 -9.17196 -8.40451 -5.36525 0.79103 1.52325 1.59939 1.69362 1.70709 1.84109 1.86295 2.17743 2.72051 3.32753 3.41785 3.61403 3.71791 3.85981 3.88056 3.99708 4.11997 4.17305 4.17902 4.30201 4.33233 4.40623 4.47478 4.62141 4.70892 4.77724 4.91683 4.93067 4.97925 5.08338 5.10330 5.17356 5.26001 5.34992 5.60100 5.64349 6.23945 6.45127 6.47283 7.02289 7.05062 7.93025 8.06058 9.11007 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046905 B = 0.002749 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.805730 B =10183.918457 C =10363.403651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.107 4.107 3 Si 1.131 2.869 4 H -0.286 1.286 5 H -0.267 1.267 6 H -0.296 1.296 7 C -0.327 4.327 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.169 3.831 11 H 0.070 0.930 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.614 5.614 15 C 0.522 3.478 16 O -0.589 6.589 17 C -0.117 4.117 18 C -0.020 4.020 19 C -0.027 4.027 20 C -0.214 4.214 21 C -0.226 4.226 22 C -0.046 4.046 23 O -0.196 6.196 24 C 0.109 3.891 25 H 0.243 0.757 26 H 0.358 0.642 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.234 0.766 38 H 0.063 0.937 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 -24.647 -7.324 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.298 4.298 3 Si 0.956 3.044 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.223 1.223 7 C -0.459 4.459 8 H 0.093 0.907 9 N -0.386 5.386 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.186 4.186 13 C -0.016 4.016 14 N -0.348 5.348 15 C 0.313 3.687 16 O -0.470 6.470 17 C -0.157 4.157 18 C -0.058 4.058 19 C -0.077 4.077 20 C -0.233 4.233 21 C -0.245 4.245 22 C -0.112 4.112 23 O -0.093 6.093 24 C -0.016 4.016 25 H 0.053 0.947 26 H 0.190 0.810 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.186 0.814 37 H 0.250 0.750 38 H 0.081 0.919 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.725 -22.991 -6.977 25.238 hybrid contribution -0.541 -1.527 0.270 1.642 sum 7.184 -24.518 -6.707 26.414 Atomic orbital electron populations 1.70971 1.07420 1.27879 1.56328 1.27263 0.97046 1.04911 1.00539 0.82578 0.73683 0.71352 0.76775 1.21341 1.19219 1.22312 1.20406 0.92564 0.86437 1.46454 0.90663 1.42588 1.04555 1.01674 1.89752 1.21342 0.93895 0.83592 0.95243 0.91250 1.23351 1.02474 0.94557 0.98268 1.22559 0.91817 0.95044 0.92149 1.48662 1.41628 1.09665 1.34841 1.20988 0.79989 0.83035 0.84717 1.90693 1.35222 1.83402 1.37703 1.21611 1.03668 0.90693 0.99681 1.19736 1.00805 0.88609 0.96610 1.22433 0.97075 1.00568 0.87613 1.21932 1.01629 0.97377 1.02321 1.22188 1.02829 1.03762 0.95697 1.24788 0.96159 0.88843 1.01438 1.84030 1.52175 1.41773 1.31328 1.22038 0.99066 0.85531 0.94941 0.94679 0.81009 0.92783 0.89274 0.87958 0.88407 0.87158 0.85699 0.88045 0.90831 0.82178 0.81412 0.74973 0.91872 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.52 13.70 21.65 0.30 -61.22 16 2 C -0.11 -6.12 5.50 84.86 0.47 -5.66 16 3 Si 1.13 51.08 29.92 68.60 2.05 53.13 16 4 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.33 -17.82 9.97 84.03 0.84 -16.98 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -36.82 5.23 -317.33 -1.66 -38.48 16 10 C 0.17 6.36 3.59 46.19 0.17 6.53 16 11 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 12 C -0.15 -4.40 6.77 31.99 0.22 -4.18 16 13 C 0.11 2.29 6.69 86.86 0.58 2.87 16 14 N -0.61 -17.50 3.33 -811.04 -2.70 -20.20 16 15 C 0.52 14.73 7.85 87.66 0.69 15.42 16 16 O -0.59 -21.71 16.31 -3.03 -0.05 -21.76 16 17 C -0.12 -2.15 4.69 29.85 0.14 -2.01 16 18 C -0.02 -0.39 5.04 29.85 0.15 -0.24 16 19 C -0.03 -0.52 6.58 24.83 0.16 -0.36 16 20 C -0.21 -3.54 10.81 22.19 0.24 -3.30 16 21 C -0.23 -3.18 10.91 22.19 0.24 -2.94 16 22 C -0.05 -0.63 12.09 66.97 0.81 0.18 16 23 O -0.20 -3.91 10.65 -2.58 -0.03 -3.94 16 24 C 0.11 3.86 6.64 86.67 0.58 4.44 16 25 H 0.24 15.33 6.77 -92.71 -0.63 14.71 16 26 H 0.36 19.05 6.37 -92.71 -0.59 18.46 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.10 1.65 7.48 -2.39 -0.02 1.63 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 1.78 7.85 -2.39 -0.02 1.76 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.04 1.71 7.70 -2.39 -0.02 1.69 16 Total: -1.00 -74.34 330.76 3.78 -70.55 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.60 Total: 28.16 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.28 Total: -6.25 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -4.07 Total: -119.90 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.08 Total: -25.70 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Total: -74.34 3.78 -70.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966910765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.864 kcal (2) G-P(sol) polarization free energy of solvation -74.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds