Wall clock time and date at job start Tue Mar 31 2020 00:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64490 * 34.29657 * 10 9 7 12 12 C 1.55165 * 110.72000 * 271.15446 * 10 9 7 13 13 C 1.54912 * 101.58248 * 206.13624 * 12 10 9 14 14 N 1.47425 * 104.83031 * 37.00710 * 13 12 10 15 15 C 1.34774 * 125.64433 * 155.84149 * 14 13 12 16 16 O 1.21288 * 119.99691 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00324 * 0.02562 * 15 14 13 18 18 C 1.53006 * 109.47319 * 180.02562 * 17 15 14 19 19 C 1.50692 * 109.46998 * 180.02562 * 18 17 15 20 20 C 1.41382 * 126.58144 * 89.99942 * 19 18 17 21 21 C 1.34512 * 106.84447 * 179.97438 * 20 19 18 22 22 O 1.34305 * 108.41975 * 359.97438 * 21 20 19 23 23 C 1.34305 * 109.47379 * 359.77314 * 22 21 20 24 24 C 1.47316 * 108.74055 * 335.71317 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.08997 * 110.99809 * 324.20743 * 12 10 9 28 28 H 1.08998 * 111.00542 * 88.05892 * 12 10 9 29 29 H 1.08990 * 110.36712 * 155.84555 * 13 12 10 30 30 H 1.09000 * 110.36204 * 278.06271 * 13 12 10 31 31 H 1.08999 * 109.46885 * 300.00412 * 17 15 14 32 32 H 1.09003 * 109.47020 * 60.00428 * 17 15 14 33 33 H 1.08998 * 109.46620 * 299.99905 * 18 17 15 34 34 H 1.09003 * 109.47065 * 60.00039 * 18 17 15 35 35 H 1.08006 * 126.58090 * 359.92979 * 20 19 18 36 36 H 1.07997 * 125.79315 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.78786 * 180.23515 * 23 22 21 38 38 H 1.08997 * 110.06928 * 241.87297 * 24 14 13 39 39 H 1.09000 * 109.84708 * 120.60976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9794 -3.5686 0.5739 12 6 2.3589 -4.1169 -1.4526 13 6 2.4687 -5.6520 -1.2756 14 7 1.4457 -5.9900 -0.2693 15 6 0.8561 -7.1929 -0.1221 16 8 0.0230 -7.3580 0.7438 17 6 1.2319 -8.3329 -1.0334 18 6 0.4222 -9.5753 -0.6566 19 6 0.7985 -10.7153 -1.5674 20 6 1.8242 -11.6638 -1.3505 21 6 1.8137 -12.4975 -2.4061 22 8 0.8412 -12.1067 -3.2459 23 6 0.2187 -11.0296 -2.7398 24 6 1.1762 -4.7964 0.5510 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.5387 -3.8586 -2.1223 28 1 3.2993 -3.6964 -1.8087 29 1 2.2567 -6.1585 -2.2170 30 1 3.4614 -5.9222 -0.9153 31 1 1.0165 -8.0586 -2.0661 32 1 2.2956 -8.5464 -0.9284 33 1 0.6372 -9.8496 0.3761 34 1 -0.6415 -9.3614 -0.7619 35 1 2.4891 -11.7098 -0.5006 36 1 2.4747 -13.3389 -2.5530 37 1 -0.6057 -10.5033 -3.1979 38 1 1.4330 -4.9923 1.5921 39 1 0.1241 -4.5227 0.4718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968371595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:58 Heat of formation + Delta-G solvation = -11.106181 kcal Electronic energy + Delta-G solvation = -20765.775093 eV Core-core repulsion = 17482.249241 eV Total energy + Delta-G solvation = -3283.525853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.79952 -39.87822 -37.50091 -35.00968 -34.43205 -31.95198 -31.31915 -29.53477 -29.43702 -27.65661 -24.92941 -23.31085 -22.70198 -21.85485 -20.50628 -20.18328 -19.02725 -17.80244 -17.58309 -16.79065 -16.20982 -16.09538 -15.37990 -15.03059 -14.82410 -14.54108 -13.79703 -13.62383 -13.35632 -13.07167 -12.89538 -12.74119 -12.60356 -12.35778 -12.06567 -11.86966 -11.75883 -11.14765 -11.07006 -10.76119 -10.67774 -10.34501 -10.02350 -10.00134 -9.67844 -9.25508 -9.00069 -8.79850 -8.47702 -7.14586 -6.17360 -3.19403 1.50135 2.30622 2.73278 2.88501 3.13214 3.48344 3.51572 3.69343 4.41874 4.53814 4.61352 4.69584 4.88996 4.94181 4.96851 5.02252 5.23672 5.25796 5.40943 5.45691 5.49347 5.52070 5.56582 5.69349 5.81203 5.86557 5.94005 5.96081 6.00993 6.14611 6.25849 6.27471 6.47521 6.50461 6.79154 6.85213 7.66921 7.73075 8.26782 8.67728 9.12170 9.98740 10.12249 11.30512 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046818 B = 0.002732 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.916296 B =10247.878572 C =10430.931348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.727 5.727 10 C 0.176 3.824 11 H 0.066 0.934 12 C -0.154 4.154 13 C 0.099 3.901 14 N -0.614 5.614 15 C 0.523 3.477 16 O -0.548 6.548 17 C -0.128 4.128 18 C -0.035 4.035 19 C -0.177 4.177 20 C -0.208 4.208 21 C -0.045 4.045 22 O -0.179 6.179 23 C -0.040 4.040 24 C 0.100 3.900 25 H 0.256 0.744 26 H 0.369 0.631 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.201 0.799 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 -22.784 -5.944 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.195 4.195 13 C -0.025 4.025 14 N -0.348 5.348 15 C 0.312 3.688 16 O -0.426 6.426 17 C -0.168 4.168 18 C -0.073 4.073 19 C -0.178 4.178 20 C -0.228 4.228 21 C -0.112 4.112 22 O -0.075 6.075 23 C -0.108 4.108 24 C -0.024 4.024 25 H 0.067 0.933 26 H 0.203 0.797 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.084 0.916 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.094 -21.360 -5.718 22.692 hybrid contribution 0.142 -1.615 0.085 1.623 sum 5.236 -22.975 -5.634 24.228 Atomic orbital electron populations 1.70887 1.06090 1.28569 1.52932 1.25831 0.97021 1.01113 1.00050 0.83230 0.74226 0.75496 0.75893 1.20991 1.22169 1.22179 1.20014 0.92049 0.85482 1.49195 0.91531 1.42374 1.04835 1.00395 1.89304 1.21125 0.94284 0.85201 0.92912 0.91601 1.23542 1.02741 0.91763 1.01479 1.22392 0.91135 0.97688 0.91237 1.48598 1.41003 1.10452 1.34782 1.20345 0.80969 0.82556 0.84951 1.90700 1.33421 1.82715 1.35745 1.21608 1.02227 0.93105 0.99846 1.19702 1.00185 0.89382 0.98019 1.20521 0.99355 1.00326 0.97628 1.21797 1.02139 0.97599 1.01217 1.24017 0.94236 1.02154 0.90835 1.84071 1.39533 1.39284 1.44582 1.23936 1.00766 0.90210 0.95875 1.22357 1.00880 0.84576 0.94545 0.93281 0.79702 0.90815 0.90450 0.91224 0.91558 0.89032 0.88970 0.90142 0.90243 0.83475 0.78245 0.78158 0.91595 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.78 13.70 55.49 0.76 -28.02 16 2 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 3 Si 1.08 25.37 29.92 -169.99 -5.09 20.29 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.34 -9.18 9.97 -15.06 -0.15 -9.33 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.73 -17.73 5.23 -51.65 -0.27 -18.00 16 10 C 0.18 3.39 3.59 -66.09 -0.24 3.15 16 11 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 12 C -0.15 -2.48 6.77 -24.58 -0.17 -2.65 16 13 C 0.10 1.26 6.69 -2.53 -0.02 1.24 16 14 N -0.61 -9.38 3.33 -170.28 -0.57 -9.95 16 15 C 0.52 7.88 7.85 -10.99 -0.09 7.80 16 16 O -0.55 -10.26 16.31 5.55 0.09 -10.17 16 17 C -0.13 -1.36 4.69 -27.88 -0.13 -1.49 16 18 C -0.04 -0.37 5.02 -27.88 -0.14 -0.51 16 19 C -0.18 -1.70 5.42 -104.75 -0.57 -2.27 16 20 C -0.21 -1.81 10.87 -39.70 -0.43 -2.24 16 21 C -0.04 -0.34 12.09 29.42 0.36 0.01 16 22 O -0.18 -1.66 10.65 5.70 0.06 -1.60 16 23 C -0.04 -0.35 12.01 29.42 0.35 0.00 16 24 C 0.10 1.78 6.64 -2.90 -0.02 1.76 16 25 H 0.26 7.73 6.77 -40.82 -0.28 7.46 16 26 H 0.37 9.42 6.37 -40.82 -0.26 9.16 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.73 7.47 -51.93 -0.39 0.34 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -33.66 330.75 -6.94 -40.61 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.58 Total: 7.69 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.33 Total: -5.82 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.08 Total: -55.97 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.15 Total: -11.77 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.09 Total: 20.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.66 -6.94 -40.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968371595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.501 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds