Wall clock time and date at job start Tue Mar 31 2020 00:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64490 * 34.29657 * 10 9 7 12 12 C 1.55165 * 110.72000 * 271.15446 * 10 9 7 13 13 C 1.54912 * 101.58248 * 206.13624 * 12 10 9 14 14 N 1.47425 * 104.83031 * 37.00710 * 13 12 10 15 15 C 1.34774 * 125.64433 * 155.84149 * 14 13 12 16 16 O 1.21288 * 119.99691 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00324 * 0.02562 * 15 14 13 18 18 C 1.53006 * 109.47319 * 180.02562 * 17 15 14 19 19 C 1.50692 * 109.46998 * 180.02562 * 18 17 15 20 20 C 1.41382 * 126.58144 * 89.99942 * 19 18 17 21 21 C 1.34512 * 106.84447 * 179.97438 * 20 19 18 22 22 O 1.34305 * 108.41975 * 359.97438 * 21 20 19 23 23 C 1.34305 * 109.47379 * 359.77314 * 22 21 20 24 24 C 1.47316 * 108.74055 * 335.71317 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.08997 * 110.99809 * 324.20743 * 12 10 9 28 28 H 1.08998 * 111.00542 * 88.05892 * 12 10 9 29 29 H 1.08990 * 110.36712 * 155.84555 * 13 12 10 30 30 H 1.09000 * 110.36204 * 278.06271 * 13 12 10 31 31 H 1.08999 * 109.46885 * 300.00412 * 17 15 14 32 32 H 1.09003 * 109.47020 * 60.00428 * 17 15 14 33 33 H 1.08998 * 109.46620 * 299.99905 * 18 17 15 34 34 H 1.09003 * 109.47065 * 60.00039 * 18 17 15 35 35 H 1.08006 * 126.58090 * 359.92979 * 20 19 18 36 36 H 1.07997 * 125.79315 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.78786 * 180.23515 * 23 22 21 38 38 H 1.08997 * 110.06928 * 241.87297 * 24 14 13 39 39 H 1.09000 * 109.84708 * 120.60976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9794 -3.5686 0.5739 12 6 2.3589 -4.1169 -1.4526 13 6 2.4687 -5.6520 -1.2756 14 7 1.4457 -5.9900 -0.2693 15 6 0.8561 -7.1929 -0.1221 16 8 0.0230 -7.3580 0.7438 17 6 1.2319 -8.3329 -1.0334 18 6 0.4222 -9.5753 -0.6566 19 6 0.7985 -10.7153 -1.5674 20 6 1.8242 -11.6638 -1.3505 21 6 1.8137 -12.4975 -2.4061 22 8 0.8412 -12.1067 -3.2459 23 6 0.2187 -11.0296 -2.7398 24 6 1.1762 -4.7964 0.5510 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.5387 -3.8586 -2.1223 28 1 3.2993 -3.6964 -1.8087 29 1 2.2567 -6.1585 -2.2170 30 1 3.4614 -5.9222 -0.9153 31 1 1.0165 -8.0586 -2.0661 32 1 2.2956 -8.5464 -0.9284 33 1 0.6372 -9.8496 0.3761 34 1 -0.6415 -9.3614 -0.7619 35 1 2.4891 -11.7098 -0.5006 36 1 2.4747 -13.3389 -2.5530 37 1 -0.6057 -10.5033 -3.1979 38 1 1.4330 -4.9923 1.5921 39 1 0.1241 -4.5227 0.4718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968371595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:57 Heat of formation + Delta-G solvation = -33.205526 kcal Electronic energy + Delta-G solvation = -20766.733393 eV Core-core repulsion = 17482.249241 eV Total energy + Delta-G solvation = -3284.484152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.42417 -41.13764 -38.89394 -36.26224 -35.81844 -33.43599 -32.34872 -30.96431 -30.24848 -29.10191 -26.15024 -25.15386 -23.88485 -22.44607 -21.79496 -21.09866 -20.19947 -19.55527 -18.59150 -17.83433 -17.40827 -16.91232 -16.73014 -16.38586 -16.06968 -15.59907 -15.40045 -14.91372 -14.69972 -14.28170 -13.87498 -13.64608 -13.57717 -13.34508 -13.30265 -13.11782 -12.89208 -12.77081 -12.47037 -12.40674 -11.93647 -11.88210 -11.80327 -11.31145 -11.03607 -10.93992 -10.54630 -9.76161 -9.41882 -9.17491 -8.40555 -5.36649 0.89450 1.55309 1.59733 1.62908 1.70001 1.85810 1.95233 2.34848 2.72156 3.34190 3.44238 3.61496 3.75271 3.87799 3.93356 3.99690 4.16238 4.18546 4.24267 4.31353 4.37820 4.41203 4.53615 4.65741 4.78062 4.79117 4.85916 4.92018 5.06452 5.12937 5.18218 5.23341 5.34697 5.35717 5.59501 5.61368 6.23788 6.45691 6.48849 7.03351 7.07172 7.92846 8.05900 9.10795 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046818 B = 0.002732 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.916296 B =10247.878572 C =10430.931348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.106 4.106 3 Si 1.129 2.871 4 H -0.297 1.297 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.169 3.831 11 H 0.068 0.932 12 C -0.145 4.145 13 C 0.107 3.893 14 N -0.615 5.615 15 C 0.519 3.481 16 O -0.592 6.592 17 C -0.114 4.114 18 C -0.029 4.029 19 C -0.193 4.193 20 C -0.227 4.227 21 C -0.040 4.040 22 O -0.191 6.191 23 C -0.044 4.044 24 C 0.108 3.892 25 H 0.242 0.758 26 H 0.358 0.642 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.157 0.843 36 H 0.234 0.766 37 H 0.221 0.779 38 H 0.060 0.940 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 -24.414 -7.420 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.297 4.297 3 Si 0.954 3.046 4 H -0.223 1.223 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.093 0.907 9 N -0.385 5.385 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.186 4.186 13 C -0.015 4.015 14 N -0.349 5.349 15 C 0.310 3.690 16 O -0.473 6.473 17 C -0.153 4.153 18 C -0.067 4.067 19 C -0.194 4.194 20 C -0.246 4.246 21 C -0.107 4.107 22 O -0.086 6.086 23 C -0.111 4.111 24 C -0.016 4.016 25 H 0.053 0.947 26 H 0.190 0.810 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.175 0.825 36 H 0.250 0.750 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.555 -23.058 -7.219 25.315 hybrid contribution -0.589 -1.225 0.575 1.476 sum 6.967 -24.283 -6.644 26.122 Atomic orbital electron populations 1.71001 1.07405 1.27844 1.56261 1.27270 0.97040 1.04901 1.00494 0.82612 0.73330 0.71368 0.77309 1.22339 1.20318 1.19920 1.20381 0.92562 0.86463 1.46583 0.90698 1.42577 1.04546 1.01645 1.89771 1.21335 0.93840 0.83600 0.95288 0.91391 1.23346 1.02488 0.94540 0.98205 1.22542 0.91720 0.95031 0.92189 1.48699 1.41641 1.09719 1.34848 1.21218 0.79909 0.83090 0.84818 1.90683 1.35390 1.83425 1.37831 1.21616 1.03396 0.90844 0.99471 1.19559 0.99582 0.89918 0.97605 1.20499 1.00392 1.00567 0.97957 1.22029 1.02496 0.97908 1.02155 1.24684 0.93656 1.02410 0.89954 1.84088 1.40004 1.39425 1.45123 1.24339 1.00992 0.90070 0.95740 1.22026 0.99053 0.85665 0.94872 0.94713 0.80997 0.92673 0.89297 0.87803 0.88694 0.86858 0.86685 0.91539 0.91351 0.82518 0.74973 0.76244 0.92153 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.47 13.70 21.65 0.30 -61.18 16 2 C -0.11 -6.09 5.50 84.86 0.47 -5.63 16 3 Si 1.13 50.98 29.92 68.60 2.05 53.03 16 4 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.33 -17.94 9.97 84.03 0.84 -17.10 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -36.95 5.23 -317.33 -1.66 -38.61 16 10 C 0.17 6.43 3.59 46.19 0.17 6.59 16 11 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 12 C -0.15 -4.40 6.77 31.99 0.22 -4.18 16 13 C 0.11 2.34 6.69 86.86 0.58 2.92 16 14 N -0.62 -17.85 3.33 -811.05 -2.70 -20.55 16 15 C 0.52 15.00 7.85 87.66 0.69 15.69 16 16 O -0.59 -22.46 16.31 -3.05 -0.05 -22.51 16 17 C -0.11 -2.12 4.69 29.85 0.14 -1.98 16 18 C -0.03 -0.57 5.02 29.85 0.15 -0.42 16 19 C -0.19 -3.34 5.42 -19.95 -0.11 -3.45 16 20 C -0.23 -3.44 10.87 22.19 0.24 -3.19 16 21 C -0.04 -0.51 12.09 66.97 0.81 0.30 16 22 O -0.19 -3.09 10.65 -2.53 -0.03 -3.12 16 23 C -0.04 -0.68 12.01 66.97 0.80 0.12 16 24 C 0.11 3.91 6.64 86.67 0.58 4.49 16 25 H 0.24 15.31 6.77 -92.71 -0.63 14.69 16 26 H 0.36 19.10 6.37 -92.71 -0.59 18.51 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.10 1.66 7.47 -2.39 -0.02 1.64 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 1.68 7.85 -2.39 -0.02 1.66 16 32 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 34 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 36 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.73 7.70 -2.39 -0.02 1.71 16 Total: -1.00 -75.03 330.75 4.08 -70.95 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.60 Total: 27.83 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.57 Total: -5.85 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -4.07 Total: -120.34 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.08 Total: -25.63 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -75.03 4.08 -70.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968371595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.749 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds