Wall clock time and date at job start Tue Mar 31 2020 00:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47277 * 60.00025 * 15 14 13 18 18 C 1.34774 * 120.00023 * 84.99860 * 17 15 14 19 19 O 1.21697 * 120.00049 * 0.02562 * 18 17 15 20 20 C 1.46656 * 120.00167 * 180.02562 * 18 17 15 21 21 C 1.36538 * 125.98773 * 179.71585 * 20 18 17 22 22 C 1.40368 * 106.70750 * 179.90915 * 21 20 18 23 23 C 1.35130 * 107.11443 * 0.35219 * 22 21 20 24 24 O 1.33931 * 108.76562 * 359.77717 * 23 22 21 25 25 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 26 26 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 29 29 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 30 30 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 32 32 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 33 33 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 34 34 H 0.97001 * 119.99986 * 265.00712 * 17 15 14 35 35 H 1.08002 * 126.64623 * 0.03894 * 21 20 18 36 36 H 1.08006 * 126.44171 * 180.11535 * 22 21 20 37 37 H 1.08001 * 125.61896 * 179.78434 * 23 22 21 38 38 H 1.09002 * 109.47075 * 299.99543 * 25 10 9 39 39 H 1.08996 * 109.47407 * 60.00500 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 1.3220 -6.8575 -1.0448 17 7 3.1710 -5.9337 -1.4025 18 6 3.7381 -7.0174 -1.9687 19 8 3.2330 -8.1149 -1.8225 20 6 4.9637 -6.8739 -2.7612 21 6 5.6409 -7.8843 -3.3815 22 6 6.7442 -7.2977 -4.0208 23 6 6.6972 -5.9727 -3.7594 24 8 5.6228 -5.7213 -3.0002 25 6 1.1808 -4.7521 -0.6103 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 3.0467 -3.2553 1.8709 29 1 1.5111 -4.1418 2.0259 30 1 3.4462 -5.6305 2.4602 31 1 4.0981 -5.2536 0.8472 32 1 1.4000 -6.5626 1.4159 33 1 2.8559 -7.3998 0.8270 34 1 3.5734 -5.0589 -1.5193 35 1 5.3774 -8.9317 -3.3821 36 1 7.4925 -7.8096 -4.6078 37 1 7.4086 -5.2376 -4.1057 38 1 0.2701 -4.8584 -0.0208 39 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980871740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:54 Heat of formation + Delta-G solvation = -21.192441 kcal Electronic energy + Delta-G solvation = -21754.410200 eV Core-core repulsion = 18470.446974 eV Total energy + Delta-G solvation = -3283.963226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.80991 -39.96758 -37.91023 -34.55739 -33.38393 -32.94881 -31.18299 -30.51931 -29.13208 -27.86067 -24.00791 -23.53559 -22.09083 -21.87596 -21.06051 -20.57557 -18.87318 -18.65611 -17.15784 -16.49712 -16.43962 -15.56305 -15.39379 -14.71937 -14.40208 -14.28311 -13.66089 -13.49689 -13.33231 -13.15941 -13.04990 -12.85610 -12.47518 -12.08586 -11.89193 -11.74675 -11.01464 -10.88363 -10.78698 -10.41760 -10.26897 -10.24074 -10.21793 -10.17721 -9.76199 -9.53942 -9.10623 -8.89387 -8.76035 -6.98586 -5.78734 -3.07749 0.94989 2.18802 2.57767 3.14836 3.24364 3.42008 3.46669 3.47575 4.54004 4.57064 4.71931 4.84372 5.02895 5.07817 5.16260 5.45005 5.47737 5.56746 5.57786 5.67243 5.70788 5.75132 5.85801 5.95823 6.04696 6.08448 6.12796 6.21763 6.28085 6.48066 6.52565 6.58339 6.70065 6.70586 6.93194 7.07570 7.51515 7.67008 8.08889 8.39713 9.50915 10.08154 10.42806 11.43814 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.004584 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.530671 B = 6106.090781 C = 7129.700117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.180 3.820 11 H 0.042 0.958 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.128 4.128 15 C 0.150 3.850 16 H 0.087 0.913 17 N -0.704 5.704 18 C 0.601 3.399 19 O -0.528 6.528 20 C -0.075 4.075 21 C -0.126 4.126 22 C -0.228 4.228 23 C -0.007 4.007 24 O -0.160 6.160 25 C -0.134 4.134 26 H 0.256 0.744 27 H 0.384 0.616 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.210 0.790 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.986 -14.505 -4.875 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.069 3.931 11 H 0.059 0.941 12 C -0.177 4.177 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.046 3.954 16 H 0.105 0.895 17 N -0.356 5.356 18 C 0.387 3.613 19 O -0.407 6.407 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.247 4.247 23 C -0.077 4.077 24 O -0.055 6.055 25 C -0.173 4.173 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.226 0.774 38 H 0.097 0.903 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.583 -14.807 -4.644 18.783 hybrid contribution 0.606 1.285 -0.146 1.428 sum 11.188 -13.522 -4.790 18.192 Atomic orbital electron populations 1.69645 1.05108 1.25787 1.57543 1.24728 0.95481 0.97644 1.02949 0.86294 0.78554 0.83666 0.77828 1.21286 1.21695 1.21292 1.19178 0.90919 0.84122 1.42904 0.91289 1.42407 1.05779 0.99666 1.88611 1.20156 0.93929 0.85998 0.92974 0.94057 1.22285 0.99801 0.95173 1.00441 1.21518 0.98498 0.95637 0.99811 1.21909 1.00743 0.98657 0.95316 1.21066 0.84749 0.98714 0.90893 0.89456 1.46158 1.27857 1.10269 1.51266 1.16575 0.81351 0.84974 0.78449 1.90857 1.62394 1.25647 1.61806 1.22226 0.98351 0.84428 1.07693 1.21953 0.94697 1.00346 0.97659 1.21851 1.01819 0.94308 1.06769 1.24441 0.89877 0.97943 0.95406 1.84116 1.32890 1.33573 1.54941 1.22151 0.99303 0.93420 1.02394 0.93449 0.78227 0.92045 0.92475 0.92739 0.92647 0.90881 0.91989 0.75437 0.82343 0.82699 0.77380 0.90268 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.50 5.12 -53.42 -0.27 -17.77 16 10 C 0.18 3.36 2.60 -67.93 -0.18 3.18 16 11 H 0.04 0.78 6.44 -51.93 -0.33 0.45 16 12 C -0.14 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.12 -1.65 5.77 -26.73 -0.15 -1.80 16 14 C -0.13 -1.71 5.60 -26.73 -0.15 -1.86 16 15 C 0.15 2.11 2.78 -67.90 -0.19 1.92 16 16 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 17 N -0.70 -9.83 4.23 -55.09 -0.23 -10.06 16 18 C 0.60 8.81 7.75 -12.86 -0.10 8.71 16 19 O -0.53 -8.92 16.53 5.19 0.09 -8.83 16 20 C -0.07 -0.98 7.13 -36.80 -0.26 -1.24 16 21 C -0.13 -1.42 10.62 -39.39 -0.42 -1.84 16 22 C -0.23 -2.04 10.87 -39.89 -0.43 -2.47 16 23 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 24 O -0.16 -1.93 10.40 5.00 0.05 -1.88 16 25 C -0.13 -2.11 5.08 -26.70 -0.14 -2.25 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.79 7.60 -51.93 -0.39 0.39 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.41 5.65 6.62 -40.82 -0.27 5.38 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.21 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -31.44 324.77 -7.31 -38.75 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.49 Total: 11.83 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.05 Total: -6.93 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.22 Total: -54.87 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.14 Total: -10.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.44 -7.31 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980871740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.561 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds