Wall clock time and date at job start Tue Mar 31 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47277 * 60.00025 * 15 14 13 18 18 C 1.34774 * 120.00023 * 84.99860 * 17 15 14 19 19 O 1.21697 * 120.00049 * 0.02562 * 18 17 15 20 20 C 1.46656 * 120.00167 * 180.02562 * 18 17 15 21 21 C 1.36538 * 125.98773 * 179.71585 * 20 18 17 22 22 C 1.40368 * 106.70750 * 179.90915 * 21 20 18 23 23 C 1.35130 * 107.11443 * 0.35219 * 22 21 20 24 24 O 1.33931 * 108.76562 * 359.77717 * 23 22 21 25 25 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 26 26 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 29 29 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 30 30 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 32 32 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 33 33 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 34 34 H 0.97001 * 119.99986 * 265.00712 * 17 15 14 35 35 H 1.08002 * 126.64623 * 0.03894 * 21 20 18 36 36 H 1.08006 * 126.44171 * 180.11535 * 22 21 20 37 37 H 1.08001 * 125.61896 * 179.78434 * 23 22 21 38 38 H 1.09002 * 109.47075 * 299.99543 * 25 10 9 39 39 H 1.08996 * 109.47407 * 60.00500 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 1.3220 -6.8575 -1.0448 17 7 3.1710 -5.9337 -1.4025 18 6 3.7381 -7.0174 -1.9687 19 8 3.2330 -8.1149 -1.8225 20 6 4.9637 -6.8739 -2.7612 21 6 5.6409 -7.8843 -3.3815 22 6 6.7442 -7.2977 -4.0208 23 6 6.6972 -5.9727 -3.7594 24 8 5.6228 -5.7213 -3.0002 25 6 1.1808 -4.7521 -0.6103 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 3.0467 -3.2553 1.8709 29 1 1.5111 -4.1418 2.0259 30 1 3.4462 -5.6305 2.4602 31 1 4.0981 -5.2536 0.8472 32 1 1.4000 -6.5626 1.4159 33 1 2.8559 -7.3998 0.8270 34 1 3.5734 -5.0589 -1.5193 35 1 5.3774 -8.9317 -3.3821 36 1 7.4925 -7.8096 -4.6078 37 1 7.4086 -5.2376 -4.1057 38 1 0.2701 -4.8584 -0.0208 39 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980871740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:53 Heat of formation + Delta-G solvation = -41.717698 kcal Electronic energy + Delta-G solvation = -21755.300242 eV Core-core repulsion = 18470.446974 eV Total energy + Delta-G solvation = -3284.853268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.62725 -41.15160 -39.20982 -36.19585 -34.61505 -33.95923 -32.94972 -31.58248 -30.26553 -29.44024 -25.71932 -24.77127 -23.29626 -22.71764 -22.47685 -21.58367 -20.15796 -19.68058 -19.05412 -17.45323 -17.32894 -16.83497 -16.74111 -16.24607 -15.77717 -15.54070 -15.07867 -15.00501 -14.77946 -14.18097 -13.92557 -13.90809 -13.58590 -13.52499 -13.11683 -13.04887 -12.88522 -12.76751 -12.26516 -12.08716 -11.96084 -11.62280 -11.50688 -11.37655 -11.03400 -11.02352 -10.84013 -10.20953 -9.62843 -8.98569 -7.92132 -5.20249 0.04754 1.44605 1.48334 1.50588 1.56604 1.71917 2.11305 2.24008 2.57480 3.41076 3.60122 3.77607 3.85992 3.90467 3.98050 4.12343 4.28105 4.29257 4.33864 4.54246 4.63587 4.64695 4.70096 4.79192 4.90014 4.92683 4.97423 5.07576 5.15999 5.21586 5.34137 5.39734 5.43239 5.50356 5.54168 5.63778 5.87544 6.29954 6.41914 6.98241 7.36352 8.12503 8.35403 9.31173 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.004584 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.530671 B = 6106.090781 C = 7129.700117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.176 3.824 11 H 0.041 0.959 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.122 4.122 15 C 0.156 3.844 16 H 0.090 0.910 17 N -0.703 5.703 18 C 0.601 3.399 19 O -0.558 6.558 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.231 4.231 23 C 0.005 3.995 24 O -0.177 6.177 25 C -0.122 4.122 26 H 0.250 0.750 27 H 0.373 0.627 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.409 0.591 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.250 0.750 38 H 0.083 0.917 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.159 -15.191 -5.394 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.068 3.932 11 H 0.059 0.941 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.160 4.160 15 C 0.052 3.948 16 H 0.108 0.892 17 N -0.353 5.353 18 C 0.389 3.611 19 O -0.439 6.439 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.250 4.250 23 C -0.065 4.065 24 O -0.072 6.072 25 C -0.160 4.160 26 H 0.059 0.941 27 H 0.205 0.795 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.180 0.820 36 H 0.203 0.797 37 H 0.266 0.734 38 H 0.102 0.898 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.800 -15.526 -5.160 20.773 hybrid contribution 0.036 1.432 -0.048 1.433 sum 12.836 -14.094 -5.208 19.762 Atomic orbital electron populations 1.69801 1.06563 1.25983 1.59706 1.25493 0.96279 1.00884 1.03986 0.85289 0.77245 0.79570 0.78146 1.20372 1.22402 1.20565 1.19557 0.91350 0.85241 1.40770 0.90744 1.42612 1.05450 1.00889 1.88681 1.20367 0.93914 0.84793 0.94155 0.94112 1.22102 0.99586 0.96324 0.98705 1.21419 0.98073 0.93917 1.00988 1.21869 1.01164 0.98275 0.94698 1.20980 0.84796 0.97416 0.91611 0.89234 1.46119 1.27699 1.10257 1.51242 1.16760 0.81715 0.84475 0.78147 1.90825 1.63535 1.26502 1.63076 1.21973 0.99030 0.85475 1.09927 1.22256 0.95010 1.00379 0.96773 1.22224 1.01630 0.94419 1.06731 1.25378 0.88792 0.99088 0.93213 1.84100 1.33919 1.33384 1.55837 1.21992 0.99155 0.93283 1.01598 0.94139 0.79550 0.94085 0.92955 0.91091 0.92578 0.89656 0.91692 0.75425 0.81983 0.79680 0.73382 0.89805 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.24 -12.86 9.93 84.03 0.83 -12.03 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -35.99 5.12 -322.94 -1.65 -37.65 16 10 C 0.18 6.55 2.60 44.99 0.12 6.66 16 11 H 0.04 1.53 6.44 -2.39 -0.02 1.51 16 12 C -0.13 -4.30 5.50 30.59 0.17 -4.13 16 13 C -0.11 -2.83 5.77 30.60 0.18 -2.65 16 14 C -0.12 -3.06 5.60 30.59 0.17 -2.89 16 15 C 0.16 4.26 2.78 45.01 0.13 4.39 16 16 H 0.09 2.47 7.58 -2.39 -0.02 2.45 16 17 N -0.70 -19.28 4.23 -446.43 -1.89 -21.16 16 18 C 0.60 17.46 7.75 86.44 0.67 18.13 16 19 O -0.56 -18.77 16.53 -4.34 -0.07 -18.84 16 20 C -0.11 -2.85 7.13 24.07 0.17 -2.68 16 21 C -0.12 -2.62 10.62 22.39 0.24 -2.38 16 22 C -0.23 -3.45 10.87 22.07 0.24 -3.21 16 23 C 0.00 0.07 12.08 67.10 0.81 0.88 16 24 O -0.18 -4.00 10.40 -5.03 -0.05 -4.05 16 25 C -0.12 -3.79 5.08 30.61 0.16 -3.64 16 26 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 27 H 0.37 19.66 7.80 -92.71 -0.72 18.94 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.51 7.60 -2.39 -0.02 1.49 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.41 11.17 6.62 -92.71 -0.61 10.56 16 35 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.25 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -68.07 324.77 2.72 -65.35 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.27 Total: 34.55 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 4.34 Total: -7.28 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.26 Total: -117.29 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.12 Total: -22.89 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.07 2.72 -65.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980871740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.631 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds