Wall clock time and date at job start Tue Mar 31 2020 00:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99833 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99463 * 3 2 1 6 6 H 1.48500 * 109.47205 * 150.00105 * 3 2 1 7 7 C 1.38809 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99779 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47594 * 324.99912 * 10 9 7 12 12 C 1.53000 * 109.47220 * 84.99968 * 10 9 7 13 13 C 1.52999 * 109.47088 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47262 * 300.00125 * 13 12 10 15 15 C 1.53000 * 109.47172 * 59.99926 * 14 13 12 16 16 H 1.08994 * 109.47183 * 60.00609 * 15 14 13 17 17 N 1.46499 * 109.47250 * 180.02562 * 15 14 13 18 18 C 1.34782 * 120.00106 * 275.00543 * 17 15 14 19 19 O 1.21688 * 120.00052 * 359.97438 * 18 17 15 20 20 C 1.46663 * 119.99825 * 180.02562 * 18 17 15 21 21 C 1.36539 * 125.98443 * 180.26861 * 20 18 17 22 22 C 1.40362 * 106.70961 * 180.11057 * 21 20 18 23 23 C 1.35136 * 107.11382 * 359.63554 * 22 21 20 24 24 O 1.33929 * 108.76488 * 0.22517 * 23 22 21 25 25 C 1.52997 * 109.47127 * 205.00092 * 10 9 7 26 26 H 0.97003 * 119.99874 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00190 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.47206 * 60.00187 * 12 10 9 29 29 H 1.08995 * 109.46970 * 299.99980 * 12 10 9 30 30 H 1.09004 * 109.47261 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47592 * 60.00027 * 13 12 10 32 32 H 1.09006 * 109.47129 * 299.99788 * 14 13 12 33 33 H 1.09005 * 109.47638 * 180.02562 * 14 13 12 34 34 H 0.97001 * 120.00033 * 94.99358 * 17 15 14 35 35 H 1.08008 * 126.64738 * 359.97438 * 21 20 18 36 36 H 1.08002 * 126.44813 * 179.90427 * 22 21 20 37 37 H 1.07993 * 125.62081 * 180.22707 * 23 22 21 38 38 H 1.09000 * 109.47691 * 59.99659 * 25 10 9 39 39 H 1.09006 * 109.47129 * 299.99709 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 2.4207 -4.0350 1.4391 13 6 3.1851 -5.3604 1.4403 14 6 2.3078 -6.4556 0.8307 15 6 1.9450 -6.0774 -0.6067 16 1 2.8561 -5.9720 -1.1956 17 7 1.1046 -7.1259 -1.1903 18 6 1.6736 -8.2090 -1.7558 19 8 2.8855 -8.3157 -1.7820 20 6 0.8321 -9.2583 -2.3404 21 6 1.2762 -10.4035 -2.9367 22 6 0.1368 -11.1107 -3.3512 23 6 -0.9396 -10.3792 -2.9871 24 8 -0.5165 -9.2638 -2.3783 25 6 1.1812 -4.7524 -0.6082 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 1.5095 -4.1410 2.0280 29 1 3.0453 -3.2545 1.8735 30 1 3.4431 -5.6301 2.4645 31 1 4.0962 -5.2549 0.8514 32 1 1.3966 -6.5612 1.4197 33 1 2.8522 -7.4000 0.8320 34 1 0.1385 -7.0407 -1.1695 35 1 2.3050 -10.7057 -3.0664 36 1 0.1227 -12.0627 -3.8611 37 1 -1.9710 -10.6495 -3.1587 38 1 0.9226 -4.4830 -1.6322 39 1 0.2700 -4.8584 -0.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980871741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:56 Heat of formation + Delta-G solvation = -24.070589 kcal Electronic energy + Delta-G solvation = -21226.739034 eV Core-core repulsion = 17942.651002 eV Total energy + Delta-G solvation = -3284.088032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.91370 -39.85400 -37.92605 -34.79315 -33.52154 -33.17532 -31.14807 -30.55783 -29.00721 -27.74856 -24.05122 -23.54108 -22.10282 -21.86492 -21.05350 -20.34115 -19.57454 -18.56299 -17.06810 -16.55625 -16.45470 -16.21559 -14.97556 -14.68532 -14.40912 -14.09942 -13.78928 -13.53956 -13.45297 -13.25877 -13.13495 -12.94073 -12.67111 -12.15684 -12.08471 -10.99765 -10.97373 -10.88457 -10.72920 -10.51500 -10.35936 -10.33946 -10.22597 -10.14781 -9.76691 -9.62730 -9.17303 -8.89670 -8.84344 -6.96239 -5.76761 -3.05415 0.84925 2.09283 2.45857 3.06330 3.12235 3.44017 3.49460 3.50789 4.44476 4.58027 4.62581 4.75616 4.97048 5.07109 5.31101 5.35946 5.48518 5.50036 5.58118 5.62782 5.67800 5.73047 5.86631 5.96263 6.01215 6.03581 6.13384 6.25874 6.31468 6.43908 6.51784 6.59346 6.62265 6.72570 6.96470 7.12356 7.40956 7.71062 8.00350 8.41975 9.53168 10.10316 10.45132 11.45992 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.003332 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.641958 B = 8401.497437 C = 8908.802902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.091 0.909 17 N -0.711 5.711 18 C 0.601 3.399 19 O -0.522 6.522 20 C -0.075 4.075 21 C -0.125 4.125 22 C -0.226 4.226 23 C -0.009 4.009 24 O -0.163 6.163 25 C -0.130 4.130 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.404 0.596 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.210 0.790 38 H 0.069 0.931 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 -21.896 -3.565 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.109 0.891 17 N -0.360 5.360 18 C 0.386 3.614 19 O -0.400 6.400 20 C -0.127 4.127 21 C -0.146 4.146 22 C -0.246 4.246 23 C -0.079 4.079 24 O -0.058 6.058 25 C -0.169 4.169 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.649 -21.526 -3.454 21.811 hybrid contribution -0.434 0.687 -0.090 0.818 sum -1.083 -20.839 -3.545 21.166 Atomic orbital electron populations 1.69662 1.05105 1.25624 1.57848 1.24737 0.95515 0.97679 1.03078 0.86201 0.78675 0.83880 0.77518 1.21741 1.21818 1.20744 1.19247 0.91031 0.84054 1.42487 0.91123 1.42402 1.05757 0.99699 1.88612 1.20095 0.94096 0.85492 0.92993 0.93282 1.22296 0.99755 0.95241 1.00460 1.21486 0.98507 0.95302 1.00003 1.21896 1.00266 0.98953 0.95216 1.21124 0.94445 0.85907 0.94149 0.89104 1.46106 1.11010 1.20600 1.58284 1.16573 0.86404 0.80497 0.77907 1.90882 1.12366 1.77708 1.59000 1.22242 0.80525 1.00156 1.09768 1.21988 1.00940 0.93078 0.98550 1.21870 0.91830 1.03188 1.07665 1.24421 1.00472 0.85328 0.97672 1.84080 1.21544 1.39124 1.61079 1.22096 0.99419 0.93183 1.02191 0.93549 0.78321 0.92633 0.91822 0.92412 0.92089 0.91931 0.92077 0.76092 0.82247 0.82640 0.77363 0.91183 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.83 5.12 -53.42 -0.27 -18.10 16 10 C 0.18 3.56 2.77 -67.93 -0.19 3.37 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 13 C -0.11 -1.64 5.92 -26.73 -0.16 -1.79 16 14 C -0.12 -1.70 5.49 -26.73 -0.15 -1.84 16 15 C 0.15 2.10 2.45 -67.96 -0.17 1.93 16 16 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 17 N -0.71 -9.05 5.07 -55.15 -0.28 -9.33 16 18 C 0.60 8.35 7.75 -12.86 -0.10 8.25 16 19 O -0.52 -8.75 16.53 5.20 0.09 -8.67 16 20 C -0.07 -0.89 7.13 -36.80 -0.26 -1.15 16 21 C -0.12 -1.31 10.62 -39.40 -0.42 -1.73 16 22 C -0.23 -1.78 10.87 -39.89 -0.43 -2.21 16 23 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 24 O -0.16 -1.67 10.40 5.00 0.05 -1.62 16 25 C -0.13 -2.07 4.85 -26.76 -0.13 -2.20 16 26 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 4.41 8.36 -40.82 -0.34 4.07 16 35 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 36 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -32.12 329.20 -7.46 -39.58 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.67 Total: 9.93 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.04 Total: -6.81 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.17 Total: -54.73 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.14 Total: -10.29 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.12 -7.46 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980871741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.513 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds