Wall clock time and date at job start Tue Mar 31 2020 00:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99833 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99463 * 3 2 1 6 6 H 1.48500 * 109.47205 * 150.00105 * 3 2 1 7 7 C 1.38809 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99779 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47594 * 324.99912 * 10 9 7 12 12 C 1.53000 * 109.47220 * 84.99968 * 10 9 7 13 13 C 1.52999 * 109.47088 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47262 * 300.00125 * 13 12 10 15 15 C 1.53000 * 109.47172 * 59.99926 * 14 13 12 16 16 H 1.08994 * 109.47183 * 60.00609 * 15 14 13 17 17 N 1.46499 * 109.47250 * 180.02562 * 15 14 13 18 18 C 1.34782 * 120.00106 * 275.00543 * 17 15 14 19 19 O 1.21688 * 120.00052 * 359.97438 * 18 17 15 20 20 C 1.46663 * 119.99825 * 180.02562 * 18 17 15 21 21 C 1.36539 * 125.98443 * 180.26861 * 20 18 17 22 22 C 1.40362 * 106.70961 * 180.11057 * 21 20 18 23 23 C 1.35136 * 107.11382 * 359.63554 * 22 21 20 24 24 O 1.33929 * 108.76488 * 0.22517 * 23 22 21 25 25 C 1.52997 * 109.47127 * 205.00092 * 10 9 7 26 26 H 0.97003 * 119.99874 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00190 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.47206 * 60.00187 * 12 10 9 29 29 H 1.08995 * 109.46970 * 299.99980 * 12 10 9 30 30 H 1.09004 * 109.47261 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47592 * 60.00027 * 13 12 10 32 32 H 1.09006 * 109.47129 * 299.99788 * 14 13 12 33 33 H 1.09005 * 109.47638 * 180.02562 * 14 13 12 34 34 H 0.97001 * 120.00033 * 94.99358 * 17 15 14 35 35 H 1.08008 * 126.64738 * 359.97438 * 21 20 18 36 36 H 1.08002 * 126.44813 * 179.90427 * 22 21 20 37 37 H 1.07993 * 125.62081 * 180.22707 * 23 22 21 38 38 H 1.09000 * 109.47691 * 59.99659 * 25 10 9 39 39 H 1.09006 * 109.47129 * 299.99709 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 2.4207 -4.0350 1.4391 13 6 3.1851 -5.3604 1.4403 14 6 2.3078 -6.4556 0.8307 15 6 1.9450 -6.0774 -0.6067 16 1 2.8561 -5.9720 -1.1956 17 7 1.1046 -7.1259 -1.1903 18 6 1.6736 -8.2090 -1.7558 19 8 2.8855 -8.3157 -1.7820 20 6 0.8321 -9.2583 -2.3404 21 6 1.2762 -10.4035 -2.9367 22 6 0.1368 -11.1107 -3.3512 23 6 -0.9396 -10.3792 -2.9871 24 8 -0.5165 -9.2638 -2.3783 25 6 1.1812 -4.7524 -0.6082 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 1.5095 -4.1410 2.0280 29 1 3.0453 -3.2545 1.8735 30 1 3.4431 -5.6301 2.4645 31 1 4.0962 -5.2549 0.8514 32 1 1.3966 -6.5612 1.4197 33 1 2.8522 -7.4000 0.8320 34 1 0.1385 -7.0407 -1.1695 35 1 2.3050 -10.7057 -3.0664 36 1 0.1227 -12.0627 -3.8611 37 1 -1.9710 -10.6495 -3.1587 38 1 0.9226 -4.4830 -1.6322 39 1 0.2700 -4.8584 -0.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980871741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:55 Heat of formation + Delta-G solvation = -45.819505 kcal Electronic energy + Delta-G solvation = -21227.682137 eV Core-core repulsion = 17942.651002 eV Total energy + Delta-G solvation = -3285.031135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.63020 -40.99583 -39.25716 -36.31684 -34.94556 -34.00351 -32.95772 -31.53222 -30.22011 -29.28468 -25.74048 -24.80236 -23.22859 -22.73284 -22.27527 -21.40834 -20.84457 -19.64361 -18.95611 -17.51469 -17.33723 -17.24950 -16.46813 -16.04871 -15.73836 -15.46077 -15.18453 -15.02165 -14.85674 -14.36211 -14.05054 -13.92590 -13.63363 -13.53897 -13.39932 -12.90180 -12.83236 -12.28717 -12.18026 -12.05528 -11.97823 -11.71248 -11.67363 -11.41291 -11.13406 -11.04027 -10.87564 -10.25130 -9.63847 -8.99979 -7.93635 -5.21596 0.03210 1.43948 1.47757 1.48818 1.57166 1.66356 2.09051 2.18193 2.57071 3.39730 3.59026 3.72247 3.83774 3.96739 4.02023 4.11722 4.25262 4.29417 4.40860 4.50410 4.56166 4.63292 4.64957 4.75073 4.91140 4.96437 4.99373 5.08114 5.15053 5.21131 5.33649 5.35683 5.41933 5.50126 5.52948 5.64810 5.85311 6.29058 6.41925 6.97837 7.35323 8.10758 8.34588 9.29823 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.003332 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.641958 B = 8401.497437 C = 8908.802902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.237 4.237 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.038 0.962 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.157 3.843 16 H 0.075 0.925 17 N -0.703 5.703 18 C 0.600 3.400 19 O -0.560 6.560 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.234 4.234 23 C 0.010 3.990 24 O -0.172 6.172 25 C -0.116 4.116 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.159 0.841 36 H 0.184 0.816 37 H 0.255 0.745 38 H 0.061 0.939 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -23.786 -3.722 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.069 3.931 11 H 0.056 0.944 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.156 4.156 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.353 5.353 18 C 0.388 3.612 19 O -0.441 6.441 20 C -0.162 4.162 21 C -0.147 4.147 22 C -0.253 4.253 23 C -0.060 4.060 24 O -0.068 6.068 25 C -0.154 4.154 26 H 0.059 0.941 27 H 0.205 0.795 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.251 0.749 35 H 0.177 0.823 36 H 0.202 0.798 37 H 0.270 0.730 38 H 0.079 0.921 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.125 -23.453 -3.607 23.756 hybrid contribution -0.321 1.131 -0.104 1.181 sum -1.447 -22.322 -3.711 22.674 Atomic orbital electron populations 1.69808 1.06475 1.25945 1.59757 1.25504 0.96367 1.00883 1.03994 0.85200 0.77759 0.79828 0.77362 1.21564 1.22209 1.19560 1.19593 0.91352 0.85267 1.40684 0.90888 1.42580 1.05459 1.00814 1.88723 1.20304 0.93829 0.84627 0.94371 0.94352 1.22100 0.99697 0.96462 0.98437 1.21414 0.98067 0.93535 1.01409 1.21828 1.00619 0.98584 0.94529 1.20869 0.93709 0.85480 0.94681 0.90674 1.45940 1.11338 1.20007 1.57986 1.16803 0.86248 0.80790 0.77343 1.90848 1.13969 1.78657 1.60600 1.21838 0.81368 1.00521 1.12453 1.22270 1.01958 0.92873 0.97580 1.22229 0.90792 1.04299 1.07966 1.25406 1.02299 0.83522 0.94739 1.84070 1.20562 1.40470 1.61677 1.21878 0.99212 0.92930 1.01430 0.94079 0.79456 0.92809 0.93820 0.90375 0.92088 0.90784 0.91790 0.74922 0.82348 0.79830 0.72952 0.92066 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.24 -13.17 9.93 84.03 0.83 -12.34 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -36.80 5.12 -322.94 -1.65 -38.45 16 10 C 0.18 6.92 2.77 44.99 0.12 7.04 16 11 H 0.04 1.57 8.08 -2.39 -0.02 1.56 16 12 C -0.13 -4.39 5.50 30.59 0.17 -4.22 16 13 C -0.11 -2.88 5.92 30.59 0.18 -2.70 16 14 C -0.12 -3.02 5.49 30.59 0.17 -2.85 16 15 C 0.16 4.40 2.45 44.97 0.11 4.51 16 16 H 0.08 2.38 7.58 -2.39 -0.02 2.36 16 17 N -0.70 -17.51 5.07 -446.60 -2.27 -19.78 16 18 C 0.60 16.64 7.75 86.44 0.67 17.31 16 19 O -0.56 -19.06 16.53 -4.31 -0.07 -19.13 16 20 C -0.11 -2.53 7.13 24.07 0.17 -2.36 16 21 C -0.13 -2.49 10.62 22.39 0.24 -2.25 16 22 C -0.23 -2.99 10.87 22.07 0.24 -2.75 16 23 C 0.01 0.11 12.08 67.10 0.81 0.92 16 24 O -0.17 -3.18 10.40 -5.02 -0.05 -3.23 16 25 C -0.12 -3.66 4.85 30.58 0.15 -3.51 16 26 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.37 19.87 7.80 -92.71 -0.72 19.15 16 28 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.41 8.64 8.36 -92.71 -0.77 7.86 16 35 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.25 0.25 8.06 -2.91 -0.02 0.22 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -70.29 329.20 2.17 -68.12 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.43 Total: 29.97 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.33 Total: -7.07 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -3.64 Total: -117.07 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.12 Total: -22.36 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -70.29 2.17 -68.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980871741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.302 kcal (2) G-P(sol) polarization free energy of solvation -70.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds