Wall clock time and date at job start Tue Mar 31 2020 00:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99540 * 2 1 4 4 H 1.48498 * 109.47158 * 240.00015 * 3 2 1 5 5 H 1.48493 * 109.47600 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46916 * 120.00512 * 3 2 1 7 7 C 1.38810 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99782 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99636 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47298 * 35.00053 * 10 9 7 12 12 C 1.53004 * 109.47189 * 274.99913 * 10 9 7 13 13 C 1.52997 * 109.47280 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46989 * 59.99923 * 13 12 10 15 15 C 1.52995 * 109.47415 * 299.99804 * 14 13 12 16 16 H 1.08999 * 109.47270 * 300.00198 * 15 14 13 17 17 N 1.46499 * 109.47374 * 179.97438 * 15 14 13 18 18 C 1.34783 * 119.99715 * 85.00211 * 17 15 14 19 19 O 1.21613 * 119.99855 * 0.02562 * 18 17 15 20 20 C 1.47372 * 119.99856 * 179.97438 * 18 17 15 21 21 C 1.47019 * 127.19282 * 180.13474 * 20 18 17 22 22 C 1.34179 * 105.95831 * 180.29904 * 21 20 18 23 23 O 1.34222 * 109.12049 * 359.76062 * 22 21 20 24 24 C 1.33657 * 110.90703 * 359.97438 * 23 22 21 25 25 C 1.53001 * 109.47051 * 155.00311 * 10 9 7 26 26 H 0.96996 * 119.99833 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00256 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47115 * 300.00252 * 12 10 9 29 29 H 1.09001 * 109.47251 * 59.99697 * 12 10 9 30 30 H 1.09000 * 109.46980 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47113 * 300.00082 * 13 12 10 32 32 H 1.09006 * 109.46876 * 179.97438 * 14 13 12 33 33 H 1.08999 * 109.47063 * 60.00129 * 14 13 12 34 34 H 0.96998 * 120.00520 * 265.00519 * 17 15 14 35 35 H 1.08003 * 127.02526 * 0.04451 * 21 20 18 36 36 H 1.07995 * 125.43980 * 179.72451 * 22 21 20 37 37 H 1.08002 * 125.79655 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.47280 * 59.99731 * 25 10 9 39 39 H 1.09000 * 109.47025 * 299.99611 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5889 12 6 2.4222 -4.0355 -1.4376 13 6 3.1867 -5.3608 -1.4377 14 6 2.3091 -6.4559 -0.8282 15 6 1.9452 -6.0772 0.6088 16 1 2.8559 -5.9713 1.1983 17 7 1.1044 -7.1254 1.1921 18 6 1.6731 -8.2082 1.7586 19 8 2.8843 -8.3146 1.7858 20 6 0.8273 -9.2624 2.3459 21 6 1.2760 -10.4996 3.0014 22 6 0.1602 -11.1479 3.3689 23 8 -0.9094 -10.4232 3.0052 24 6 -0.5356 -9.2931 2.3972 25 6 1.1811 -4.7521 0.6090 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0005 28 1 1.5115 -4.1418 -2.0270 29 1 3.0470 -3.2551 -1.8720 30 1 3.4463 -5.6304 -2.4614 31 1 4.0974 -5.2549 -0.8481 32 1 2.8536 -7.4001 -0.8287 33 1 1.3984 -6.5617 -1.4178 34 1 0.1384 -7.0404 1.1707 35 1 2.2954 -10.8227 3.1523 36 1 0.1279 -12.1010 3.8758 37 1 -1.1998 -8.5358 2.0077 38 1 0.2704 -4.8584 0.0196 39 1 0.9219 -4.4823 1.6328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980918133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:16 Heat of formation + Delta-G solvation = -48.278078 kcal Electronic energy + Delta-G solvation = -21169.719206 eV Core-core repulsion = 17884.581459 eV Total energy + Delta-G solvation = -3285.137747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.44947 -40.92999 -39.18632 -36.24281 -34.91424 -33.77897 -32.92167 -31.31110 -30.17303 -29.27383 -25.73842 -24.97806 -23.24063 -22.45845 -22.28596 -21.27820 -20.68433 -19.49898 -18.92834 -17.41894 -17.16468 -17.07546 -16.41624 -16.04282 -15.82954 -15.56173 -15.31214 -15.02139 -14.96287 -14.48366 -14.16906 -13.83192 -13.61275 -13.44263 -13.25367 -12.90336 -12.79122 -12.29094 -12.18167 -12.05099 -11.97002 -11.65148 -11.54907 -11.39346 -10.99446 -10.86067 -10.83373 -10.11419 -9.71253 -8.99262 -7.93356 -5.21018 0.37807 1.14980 1.47854 1.49970 1.55967 1.99736 2.17617 2.33628 2.57413 3.39823 3.60418 3.66847 3.80146 3.86242 4.02174 4.11582 4.28180 4.30971 4.43099 4.52318 4.57584 4.59344 4.67490 4.76314 4.78578 5.02015 5.03492 5.11591 5.17457 5.21847 5.34159 5.35454 5.45545 5.50622 5.53726 5.65949 6.00972 6.29525 6.54659 7.20308 7.35953 8.11528 8.35642 9.29770 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.003290 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.590894 B = 8509.096868 C = 9016.580424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.034 0.966 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.066 0.934 17 N -0.707 5.707 18 C 0.584 3.416 19 O -0.586 6.586 20 C -0.270 4.270 21 C -0.200 4.200 22 C -0.023 4.023 23 O -0.177 6.177 24 C 0.045 3.955 25 C -0.114 4.114 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.413 0.587 35 H 0.153 0.847 36 H 0.247 0.753 37 H 0.248 0.752 38 H 0.079 0.921 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 -23.000 3.367 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.053 0.947 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.154 4.154 15 C 0.054 3.946 16 H 0.084 0.916 17 N -0.358 5.358 18 C 0.373 3.627 19 O -0.467 6.467 20 C -0.275 4.275 21 C -0.220 4.220 22 C -0.088 4.088 23 O -0.071 6.071 24 C -0.026 4.026 25 C -0.153 4.153 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.263 0.737 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.891 -23.025 3.460 23.360 hybrid contribution 0.120 1.398 -0.065 1.404 sum -1.772 -21.627 3.395 21.964 Atomic orbital electron populations 1.69790 1.06397 1.26029 1.59644 1.25479 0.96362 1.00792 1.03947 0.85292 0.77279 0.79617 0.78080 1.20554 1.22105 1.20656 1.19545 0.91300 0.85358 1.40885 0.91080 1.42551 1.05462 1.00728 1.88737 1.20303 0.93838 0.84793 0.94286 0.94749 1.22094 0.99705 0.96278 0.98540 1.21415 0.98059 0.93794 1.01276 1.21809 1.00581 0.98219 0.94837 1.20757 0.93698 0.85773 0.94358 0.91557 1.45797 1.10988 1.20113 1.58863 1.17663 0.86924 0.81314 0.76755 1.90754 1.16170 1.79280 1.60529 1.21554 0.94517 0.99457 1.11978 1.22966 1.01042 0.94444 1.03501 1.24605 0.82215 0.99123 1.02867 1.83849 1.36568 1.28074 1.58646 1.25087 0.94182 0.88615 0.94693 1.21868 0.99216 0.92723 1.01490 0.94046 0.79343 0.92585 0.94032 0.90530 0.92513 0.92307 0.90448 0.74976 0.82942 0.73663 0.73646 0.90205 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.24 -13.22 9.93 84.03 0.83 -12.39 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -36.29 5.12 -322.93 -1.65 -37.94 16 10 C 0.18 6.81 2.77 44.99 0.12 6.94 16 11 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 12 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 13 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 14 C -0.12 -2.96 5.49 30.59 0.17 -2.79 16 15 C 0.16 4.34 2.45 44.98 0.11 4.45 16 16 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 17 N -0.71 -15.84 5.07 -445.92 -2.26 -18.10 16 18 C 0.58 15.73 7.78 86.65 0.67 16.41 16 19 O -0.59 -21.03 16.65 -4.07 -0.07 -21.10 16 20 C -0.27 -5.65 6.31 -18.99 -0.12 -5.77 16 21 C -0.20 -3.77 11.01 23.65 0.26 -3.51 16 22 C -0.02 -0.28 12.03 66.89 0.80 0.53 16 23 O -0.18 -2.42 10.52 4.36 0.05 -2.37 16 24 C 0.04 0.60 11.61 67.39 0.78 1.38 16 25 C -0.11 -3.46 4.85 30.58 0.15 -3.31 16 26 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.37 19.54 7.80 -92.71 -0.72 18.82 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.56 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.41 6.29 7.57 -92.71 -0.70 5.59 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.25 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.25 1.17 7.47 -2.91 -0.02 1.15 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -73.88 328.35 2.62 -71.26 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.36 Total: 26.98 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 4.60 Total: -8.72 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.63 Total: -114.24 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.02 Total: -23.46 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.88 2.62 -71.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980918133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.983 kcal (2) G-P(sol) polarization free energy of solvation -73.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds