Wall clock time and date at job start Tue Mar 31 2020 00:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46789 * 299.99316 * 3 2 1 6 6 H 1.48497 * 109.47414 * 59.99075 * 3 2 1 7 7 C 1.38802 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99770 * 10 9 7 12 12 C 1.53005 * 109.47094 * 84.99505 * 10 9 7 13 13 C 1.52999 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 274.99457 * 17 15 14 19 19 O 1.21603 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.47373 * 119.99952 * 180.02562 * 18 17 15 21 21 C 1.47026 * 127.19584 * 180.02562 * 20 18 17 22 22 C 1.34171 * 105.95892 * 179.97438 * 21 20 18 23 23 O 1.34210 * 109.12627 * 0.02562 * 22 21 20 24 24 C 1.33662 * 110.90801 * 359.72214 * 23 22 21 25 25 C 1.52997 * 109.47007 * 204.99821 * 10 9 7 26 26 H 0.97006 * 119.99987 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99642 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47360 * 300.00194 * 12 10 9 29 29 H 1.09002 * 109.46935 * 60.00169 * 12 10 9 30 30 H 1.08996 * 109.46929 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.46716 * 60.00455 * 13 12 10 32 32 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 33 33 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 34 34 H 0.97002 * 120.00410 * 95.00239 * 17 15 14 35 35 H 1.07999 * 127.01571 * 0.02562 * 21 20 18 36 36 H 1.08000 * 125.44013 * 179.97438 * 22 21 20 37 37 H 1.07994 * 125.80547 * 180.29375 * 24 23 22 38 38 H 1.08993 * 109.47194 * 59.99623 * 25 10 9 39 39 H 1.09002 * 109.46695 * 299.99637 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 -0.5889 12 6 2.4221 -4.0355 1.4376 13 6 3.1865 -5.3608 1.4377 14 6 2.3089 -6.4559 0.8283 15 6 1.9450 -6.0771 -0.6088 16 1 2.8556 -5.9712 -1.1983 17 7 1.1042 -7.1254 -1.1920 18 6 1.6729 -8.2081 -1.7585 19 8 2.8839 -8.3150 -1.7851 20 6 0.8270 -9.2624 -2.3458 21 6 1.2755 -10.5012 -2.9985 22 6 0.1599 -11.1459 -3.3724 23 8 -0.9096 -10.4201 -3.0111 24 6 -0.5360 -9.2957 -2.3924 25 6 1.1809 -4.7521 -0.6090 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 3.0470 -3.2551 1.8719 29 1 1.5114 -4.1418 2.0271 30 1 3.4462 -5.6304 2.4613 31 1 4.0972 -5.2549 0.8481 32 1 1.3982 -6.5618 1.4178 33 1 2.8538 -7.4000 0.8279 34 1 0.1381 -7.0403 -1.1706 35 1 2.2949 -10.8261 -3.1459 36 1 0.1276 -12.0968 -3.8835 37 1 -1.2002 -8.5407 -1.9984 38 1 0.9216 -4.4822 -1.6327 39 1 0.2702 -4.8583 -0.0195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980918134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:19 Heat of formation + Delta-G solvation = -25.160311 kcal Electronic energy + Delta-G solvation = -21168.943467 eV Core-core repulsion = 17884.808181 eV Total energy + Delta-G solvation = -3284.135286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.78658 -39.79333 -37.86054 -34.68936 -33.50028 -32.93091 -31.13972 -30.42754 -28.99056 -27.74528 -24.18944 -23.61309 -22.00378 -21.69303 -21.07760 -20.19252 -19.44992 -18.52472 -17.07115 -16.40365 -16.29109 -16.09821 -15.15062 -14.82237 -14.50671 -14.35065 -13.79636 -13.59198 -13.53018 -13.17175 -13.13844 -12.73949 -12.60013 -12.13025 -12.07738 -11.00266 -10.95251 -10.89540 -10.72752 -10.35163 -10.32037 -10.19134 -10.09184 -10.05875 -9.73232 -9.60800 -9.14275 -8.96305 -8.86808 -6.96834 -5.77756 -3.06287 1.11852 1.83066 2.63962 3.11150 3.29182 3.43031 3.49263 3.51055 4.31947 4.43876 4.57558 4.80646 4.98177 5.08547 5.24917 5.33001 5.39893 5.49818 5.58621 5.64405 5.68584 5.74903 5.87479 5.97000 6.00679 6.02640 6.14356 6.30077 6.32516 6.51968 6.53573 6.62238 6.66136 6.72694 6.96379 7.12046 7.49211 7.70991 8.19838 8.41067 9.52384 10.09462 10.44232 11.45062 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.003290 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.787697 B = 8508.701138 C = 9016.638646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.150 3.850 16 H 0.089 0.911 17 N -0.720 5.720 18 C 0.584 3.416 19 O -0.537 6.537 20 C -0.232 4.232 21 C -0.166 4.166 22 C -0.043 4.043 23 O -0.175 6.175 24 C 0.019 3.981 25 C -0.129 4.129 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.396 0.604 35 H 0.159 0.841 36 H 0.208 0.792 37 H 0.212 0.788 38 H 0.069 0.931 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 -21.557 -3.405 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.107 0.893 17 N -0.370 5.370 18 C 0.372 3.628 19 O -0.415 6.415 20 C -0.237 4.237 21 C -0.185 4.185 22 C -0.109 4.109 23 O -0.070 6.070 24 C -0.051 4.051 25 C -0.168 4.168 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.230 0.770 35 H 0.177 0.823 36 H 0.225 0.775 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.888 -21.552 -3.500 21.852 hybrid contribution -0.199 1.030 0.108 1.054 sum -1.086 -20.522 -3.392 20.829 Atomic orbital electron populations 1.69669 1.05100 1.25504 1.57972 1.24733 0.95519 0.97680 1.03105 0.86134 0.78852 0.84178 0.77157 1.20523 1.21903 1.21909 1.19296 0.91065 0.84047 1.42308 0.91079 1.42412 1.05743 0.99725 1.88612 1.20098 0.94117 0.85499 0.92999 0.93319 1.22291 0.99724 0.95247 1.00441 1.21486 0.98538 0.95344 0.99975 1.21884 1.00135 0.98891 0.95344 1.21045 0.94468 0.85896 0.94024 0.89308 1.46023 1.10283 1.21138 1.59530 1.17275 0.87238 0.80884 0.77435 1.90783 1.14028 1.78183 1.58488 1.21642 0.93343 0.99143 1.09567 1.22808 1.00221 0.93747 1.01757 1.23946 0.83518 0.98662 1.04774 1.83795 1.36302 1.28385 1.58565 1.24497 0.94933 0.88786 0.96890 1.22090 0.99364 0.93335 1.02050 0.93607 0.78348 0.91870 0.92664 0.92479 0.92146 0.92047 0.92147 0.77016 0.82330 0.77519 0.77165 0.91263 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.72 -17.71 5.12 -53.42 -0.27 -17.98 16 10 C 0.18 3.53 2.77 -67.93 -0.19 3.34 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.39 5.50 -26.73 -0.15 -2.53 16 13 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 14 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 15 C 0.15 2.10 2.45 -67.95 -0.17 1.94 16 16 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 17 N -0.72 -8.56 5.07 -54.92 -0.28 -8.84 16 18 C 0.58 8.00 7.78 -12.54 -0.10 7.90 16 19 O -0.54 -9.41 16.65 5.27 0.09 -9.33 16 20 C -0.23 -2.57 6.31 -103.27 -0.65 -3.22 16 21 C -0.17 -1.63 11.01 -37.45 -0.41 -2.05 16 22 C -0.04 -0.32 12.03 29.30 0.35 0.03 16 23 O -0.18 -1.48 10.52 7.64 0.08 -1.40 16 24 C 0.02 0.16 11.61 30.08 0.35 0.51 16 25 C -0.13 -2.01 4.86 -26.75 -0.13 -2.14 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.52 7.57 -40.82 -0.31 3.21 16 35 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.21 0.94 7.47 -52.49 -0.39 0.55 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -33.55 328.35 -6.98 -40.54 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.61 Total: 8.94 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.64 Total: -7.00 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.17 Total: -53.99 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.17 Total: -10.73 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.55 -6.98 -40.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980918134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.377 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds