Wall clock time and date at job start Tue Mar 31 2020 00:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46789 * 299.99316 * 3 2 1 6 6 H 1.48497 * 109.47414 * 59.99075 * 3 2 1 7 7 C 1.38802 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99770 * 10 9 7 12 12 C 1.53005 * 109.47094 * 84.99505 * 10 9 7 13 13 C 1.52999 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 274.99457 * 17 15 14 19 19 O 1.21603 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.47373 * 119.99952 * 180.02562 * 18 17 15 21 21 C 1.47026 * 127.19584 * 180.02562 * 20 18 17 22 22 C 1.34171 * 105.95892 * 179.97438 * 21 20 18 23 23 O 1.34210 * 109.12627 * 0.02562 * 22 21 20 24 24 C 1.33662 * 110.90801 * 359.72214 * 23 22 21 25 25 C 1.52997 * 109.47007 * 204.99821 * 10 9 7 26 26 H 0.97006 * 119.99987 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99642 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47360 * 300.00194 * 12 10 9 29 29 H 1.09002 * 109.46935 * 60.00169 * 12 10 9 30 30 H 1.08996 * 109.46929 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.46716 * 60.00455 * 13 12 10 32 32 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 33 33 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 34 34 H 0.97002 * 120.00410 * 95.00239 * 17 15 14 35 35 H 1.07999 * 127.01571 * 0.02562 * 21 20 18 36 36 H 1.08000 * 125.44013 * 179.97438 * 22 21 20 37 37 H 1.07994 * 125.80547 * 180.29375 * 24 23 22 38 38 H 1.08993 * 109.47194 * 59.99623 * 25 10 9 39 39 H 1.09002 * 109.46695 * 299.99637 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 -0.5889 12 6 2.4221 -4.0355 1.4376 13 6 3.1865 -5.3608 1.4377 14 6 2.3089 -6.4559 0.8283 15 6 1.9450 -6.0771 -0.6088 16 1 2.8556 -5.9712 -1.1983 17 7 1.1042 -7.1254 -1.1920 18 6 1.6729 -8.2081 -1.7585 19 8 2.8839 -8.3150 -1.7851 20 6 0.8270 -9.2624 -2.3458 21 6 1.2755 -10.5012 -2.9985 22 6 0.1599 -11.1459 -3.3724 23 8 -0.9096 -10.4201 -3.0111 24 6 -0.5360 -9.2957 -2.3924 25 6 1.1809 -4.7521 -0.6090 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 3.0470 -3.2551 1.8719 29 1 1.5114 -4.1418 2.0271 30 1 3.4462 -5.6304 2.4613 31 1 4.0972 -5.2549 0.8481 32 1 1.3982 -6.5618 1.4178 33 1 2.8538 -7.4000 0.8279 34 1 0.1381 -7.0403 -1.1706 35 1 2.2949 -10.8261 -3.1459 36 1 0.1276 -12.0968 -3.8835 37 1 -1.2002 -8.5407 -1.9984 38 1 0.9216 -4.4822 -1.6327 39 1 0.2702 -4.8583 -0.0195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980918134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:18 Heat of formation + Delta-G solvation = -48.429424 kcal Electronic energy + Delta-G solvation = -21169.952491 eV Core-core repulsion = 17884.808181 eV Total energy + Delta-G solvation = -3285.144310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45009 -40.93100 -39.18746 -36.24518 -34.91524 -33.77883 -32.92248 -31.31117 -30.17377 -29.27454 -25.74346 -24.97877 -23.24072 -22.45901 -22.28645 -21.27771 -20.68418 -19.49988 -18.93051 -17.42042 -17.16548 -17.07570 -16.41493 -16.04441 -15.82916 -15.56365 -15.31631 -15.02132 -14.96134 -14.48546 -14.16948 -13.83196 -13.61608 -13.44301 -13.25355 -12.91162 -12.84166 -12.26449 -12.14259 -12.02519 -11.97624 -11.66096 -11.54717 -11.39528 -10.99373 -10.87588 -10.83537 -10.11380 -9.71257 -8.99301 -7.93805 -5.21354 0.37826 1.15040 1.47585 1.48038 1.57797 1.99742 2.17652 2.33671 2.57009 3.39775 3.60410 3.66836 3.80146 3.86251 4.02203 4.11563 4.28159 4.30985 4.43071 4.52315 4.57603 4.59362 4.67509 4.76348 4.78606 5.02041 5.03517 5.11631 5.17494 5.21867 5.34180 5.35521 5.45577 5.50809 5.53998 5.65945 6.01019 6.29399 6.54688 7.20349 7.35790 8.11209 8.35249 9.29697 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.003290 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.787697 B = 8508.701138 C = 9016.638646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.034 0.966 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.066 0.934 17 N -0.707 5.707 18 C 0.584 3.416 19 O -0.586 6.586 20 C -0.271 4.271 21 C -0.200 4.200 22 C -0.023 4.023 23 O -0.177 6.177 24 C 0.045 3.955 25 C -0.114 4.114 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.413 0.587 35 H 0.153 0.847 36 H 0.247 0.753 37 H 0.248 0.752 38 H 0.062 0.938 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 -23.080 -3.360 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.053 0.947 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.154 4.154 15 C 0.054 3.946 16 H 0.084 0.916 17 N -0.358 5.358 18 C 0.373 3.627 19 O -0.467 6.467 20 C -0.275 4.275 21 C -0.220 4.220 22 C -0.088 4.088 23 O -0.071 6.071 24 C -0.026 4.026 25 C -0.153 4.153 26 H 0.059 0.941 27 H 0.207 0.793 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.263 0.737 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.816 -23.114 -3.454 23.441 hybrid contribution 0.089 1.414 0.064 1.418 sum -1.727 -21.700 -3.391 22.031 Atomic orbital electron populations 1.69803 1.06391 1.25856 1.59808 1.25473 0.96370 1.00779 1.04033 0.85157 0.78231 0.80268 0.76642 1.19343 1.22122 1.22062 1.19610 0.91295 0.85319 1.40551 0.91062 1.42572 1.05481 1.00752 1.88695 1.20305 0.93837 0.84785 0.94297 0.94743 1.22094 0.99712 0.96285 0.98529 1.21415 0.98057 0.93796 1.01279 1.21810 1.00580 0.98221 0.94834 1.20758 0.93696 0.85771 0.94363 0.91559 1.45798 1.10988 1.20125 1.58855 1.17659 0.86922 0.81326 0.76744 1.90751 1.16176 1.79283 1.60513 1.21558 0.94512 0.99425 1.12012 1.22964 1.01043 0.94376 1.03574 1.24601 0.82227 0.99064 1.02915 1.83848 1.36583 1.28436 1.58272 1.25087 0.94181 0.88705 0.94608 1.21867 0.99216 0.92724 1.01493 0.94073 0.79341 0.94008 0.92575 0.90525 0.92522 0.90439 0.92309 0.74977 0.82943 0.73664 0.73648 0.91939 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.43 13.06 21.65 0.28 -58.14 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.02 9.93 84.03 0.83 -12.19 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -36.23 5.12 -322.93 -1.65 -37.88 16 10 C 0.18 6.80 2.77 44.99 0.12 6.92 16 11 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 12 C -0.13 -4.33 5.50 30.60 0.17 -4.16 16 13 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 14 C -0.12 -2.95 5.49 30.59 0.17 -2.79 16 15 C 0.16 4.33 2.45 44.98 0.11 4.44 16 16 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 17 N -0.71 -15.82 5.07 -445.93 -2.26 -18.08 16 18 C 0.58 15.72 7.78 86.65 0.67 16.39 16 19 O -0.59 -21.00 16.65 -4.04 -0.07 -21.07 16 20 C -0.27 -5.65 6.31 -18.99 -0.12 -5.77 16 21 C -0.20 -3.77 11.01 23.65 0.26 -3.51 16 22 C -0.02 -0.28 12.03 66.89 0.80 0.53 16 23 O -0.18 -2.41 10.52 4.43 0.05 -2.37 16 24 C 0.04 0.60 11.61 67.40 0.78 1.38 16 25 C -0.11 -3.45 4.86 30.58 0.15 -3.30 16 26 H 0.25 14.67 8.31 -92.70 -0.77 13.89 16 27 H 0.37 19.51 7.80 -92.71 -0.72 18.79 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 6.28 7.57 -92.71 -0.70 5.58 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.25 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.25 1.17 7.47 -2.91 -0.02 1.15 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -73.90 328.35 2.62 -71.28 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.36 Total: 26.62 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.60 Total: -8.57 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.63 Total: -114.10 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.02 Total: -23.44 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -73.90 2.62 -71.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980918134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.851 kcal (2) G-P(sol) polarization free energy of solvation -73.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds