Wall clock time and date at job start Tue Mar 31 2020 00:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00598 * 2 1 4 4 H 1.48496 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46604 * 300.00453 * 3 2 1 6 6 H 1.48499 * 109.47049 * 59.99836 * 3 2 1 7 7 C 1.38819 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00089 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99809 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99918 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45955 * 205.00487 * 10 9 7 12 12 C 1.53195 * 109.31046 * 178.63093 * 11 10 9 13 13 N 1.46925 * 108.77662 * 54.63235 * 12 11 10 14 14 C 1.34777 * 120.62933 * 126.37171 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27723 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.41381 * 126.57596 * 269.71046 * 17 16 14 19 19 C 1.34516 * 106.83826 * 179.83827 * 18 17 16 20 20 O 1.34299 * 108.42030 * 0.42615 * 19 18 17 21 21 C 1.34309 * 109.47638 * 359.72632 * 20 19 18 22 22 C 1.46931 * 118.73924 * 306.64212 * 13 12 11 23 23 C 1.52760 * 109.00543 * 53.31068 * 22 13 12 24 24 H 0.97000 * 119.99847 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00093 * 0.02562 * 9 7 2 26 26 H 1.09005 * 109.45786 * 324.97746 * 10 9 7 27 27 H 1.08994 * 109.49700 * 58.68053 * 11 10 9 28 28 H 1.08997 * 109.52427 * 298.59546 * 11 10 9 29 29 H 1.09005 * 109.58240 * 294.84926 * 12 11 10 30 30 H 1.08995 * 109.70318 * 174.49170 * 12 11 10 31 31 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 32 32 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 33 33 H 1.08001 * 126.58066 * 359.97438 * 18 17 16 34 34 H 1.08001 * 125.78908 * 180.11653 * 19 18 17 35 35 H 1.08002 * 125.78437 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.58191 * 173.14261 * 22 13 12 37 37 H 1.09000 * 109.58404 * 293.56973 * 22 13 12 38 38 H 1.09004 * 109.56227 * 185.55021 * 23 22 13 39 39 H 1.08994 * 109.36282 * 65.49817 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.1797 -4.7520 -0.6114 12 6 1.9610 -6.0694 -0.6423 13 7 2.4412 -6.3663 0.7141 14 6 2.1727 -7.5534 1.2931 15 8 1.5286 -8.3883 0.6940 16 6 2.6669 -7.8406 2.6875 17 6 2.2299 -9.2224 3.1006 18 6 1.0294 -9.5629 3.7653 19 6 1.0432 -10.8972 3.9356 20 8 2.1862 -11.3789 3.4207 21 6 2.9098 -10.3677 2.9129 22 6 3.2146 -5.3423 1.4298 23 6 2.4239 -4.0352 1.4353 24 1 -0.4850 0.8401 0.0004 25 1 0.3554 -2.3881 -0.0005 26 1 2.9679 -3.5503 -0.5922 27 1 0.9002 -4.4709 -1.6267 28 1 0.2807 -4.8763 -0.0078 29 1 2.8110 -5.9743 -1.3181 30 1 1.3107 -6.8744 -0.9841 31 1 3.7552 -7.7829 2.7063 32 1 2.2521 -7.1066 3.3783 33 1 0.2498 -8.8826 4.0747 34 1 0.2689 -11.4813 4.4107 35 1 3.8739 -10.4589 2.4347 36 1 3.3889 -5.6667 2.4557 37 1 4.1688 -5.1868 0.9263 38 1 3.0299 -3.2440 1.8768 39 1 1.5135 -4.1661 2.0202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991604523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:56 Heat of formation + Delta-G solvation = -9.822976 kcal Electronic energy + Delta-G solvation = -21306.897164 eV Core-core repulsion = 18023.426955 eV Total energy + Delta-G solvation = -3283.470209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.64218 -39.97889 -37.39748 -34.48243 -34.12533 -32.12082 -31.11282 -30.28498 -29.30162 -27.79275 -24.80478 -22.99971 -22.67293 -21.70615 -20.98946 -20.05388 -18.81498 -17.50059 -17.21306 -17.00852 -15.96639 -15.54884 -15.37910 -14.85885 -14.76828 -13.84095 -13.80381 -13.67834 -13.47954 -13.21739 -12.92048 -12.86102 -12.60421 -12.22681 -11.90870 -11.63816 -11.57053 -10.98343 -10.89708 -10.84249 -10.49834 -10.22598 -10.00461 -9.84431 -9.70640 -9.52731 -8.94396 -8.62781 -8.48042 -7.00909 -5.80666 -3.09988 1.67531 2.43688 2.72098 3.03240 3.23141 3.39980 3.45462 3.47962 4.54607 4.60806 4.64485 4.69990 4.88797 5.07706 5.24756 5.32989 5.33612 5.37344 5.41047 5.51392 5.55621 5.65931 5.71077 5.89222 5.93358 6.00232 6.04504 6.21106 6.34971 6.35783 6.39816 6.49398 6.61953 6.87565 7.00010 7.01539 7.53672 7.65795 8.28465 8.37561 9.48844 10.06457 10.41037 11.41960 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040593 B = 0.003155 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.611593 B = 8871.859866 C = 8978.990402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.608 5.608 14 C 0.514 3.486 15 O -0.542 6.542 16 C -0.071 4.071 17 C -0.160 4.160 18 C -0.198 4.198 19 C -0.046 4.046 20 O -0.179 6.179 21 C -0.031 4.031 22 C 0.107 3.893 23 C -0.152 4.152 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.201 0.799 35 H 0.199 0.801 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 -18.749 6.914 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.341 5.341 14 C 0.302 3.698 15 O -0.419 6.419 16 C -0.111 4.111 17 C -0.161 4.161 18 C -0.217 4.217 19 C -0.114 4.114 20 O -0.074 6.074 21 C -0.098 4.098 22 C -0.017 4.017 23 C -0.193 4.193 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.164 0.836 34 H 0.217 0.783 35 H 0.216 0.784 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.436 -19.326 6.568 21.402 hybrid contribution -0.004 1.419 0.093 1.422 sum 6.431 -17.907 6.661 20.159 Atomic orbital electron populations 1.69672 1.05140 1.25587 1.57606 1.24760 0.95504 0.97736 1.02972 0.86135 0.78769 0.84177 0.77204 1.20540 1.21876 1.21884 1.19277 0.90988 0.84078 1.42738 0.91104 1.42452 1.05827 0.99727 1.88486 1.20162 0.94447 0.86081 0.92435 1.22201 0.99204 0.94163 1.02205 1.21596 0.98668 0.97983 0.82398 1.48195 1.54338 1.14727 1.16887 1.20518 0.79899 0.81444 0.87916 1.90683 1.39956 1.46175 1.65103 1.20038 1.02345 0.94073 0.94630 1.19840 0.96555 0.95058 1.04677 1.21702 0.99383 0.95833 1.04791 1.23932 0.89498 0.94478 1.03450 1.84045 1.27712 1.36585 1.59080 1.23747 0.98647 0.84823 1.02613 1.21792 0.94664 0.88826 0.96377 1.22602 1.00126 0.94795 1.01812 0.93527 0.78267 0.93417 0.90605 0.91895 0.91681 0.89467 0.88184 0.87826 0.83602 0.78263 0.78426 0.90458 0.91440 0.90569 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.58 5.12 -53.38 -0.27 -17.85 16 10 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 11 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 12 C 0.12 1.67 6.44 -3.71 -0.02 1.65 16 13 N -0.61 -8.28 2.98 -173.03 -0.52 -8.79 16 14 C 0.51 7.26 7.69 -10.98 -0.08 7.17 16 15 O -0.54 -9.63 15.45 5.55 0.09 -9.54 16 16 C -0.07 -0.75 4.56 -29.03 -0.13 -0.88 16 17 C -0.16 -1.85 4.66 -104.75 -0.49 -2.34 16 18 C -0.20 -2.23 10.87 -39.70 -0.43 -2.66 16 19 C -0.05 -0.46 12.09 29.42 0.36 -0.10 16 20 O -0.18 -2.00 10.65 5.71 0.06 -1.94 16 21 C -0.03 -0.32 12.01 29.41 0.35 0.03 16 22 C 0.11 1.30 6.32 -3.93 -0.02 1.27 16 23 C -0.15 -2.44 5.64 -26.83 -0.15 -2.60 16 24 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 26 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 31 H 0.10 0.79 7.96 -51.93 -0.41 0.38 16 32 H 0.10 0.98 7.68 -51.93 -0.40 0.59 16 33 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -33.28 325.72 -6.81 -40.09 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.57 Total: 8.09 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.21 Total: -4.79 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.06 Total: -53.71 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.15 Total: -11.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.28 -6.81 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991604523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.267 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds