Wall clock time and date at job start Tue Mar 31 2020 00:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00364 * 2 1 4 4 H 1.48503 * 109.46836 * 239.99890 * 3 2 1 5 5 H 1.48496 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47359 * 119.99909 * 3 2 1 7 7 C 1.38818 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99995 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49785 * 325.07143 * 10 9 7 12 12 C 1.53037 * 109.50047 * 204.99963 * 10 9 7 13 13 C 1.53036 * 109.53626 * 178.68745 * 12 10 9 14 14 C 1.53183 * 109.31530 * 61.36923 * 13 12 10 15 15 N 1.46934 * 108.77358 * 305.36258 * 14 13 12 16 16 C 1.34777 * 120.63116 * 233.58273 * 15 14 13 17 17 O 1.21274 * 120.00135 * 180.27770 * 16 15 14 18 18 C 1.50706 * 119.99766 * 0.02562 * 16 15 14 19 19 C 1.50699 * 109.46817 * 179.97438 * 18 16 15 20 20 C 1.41387 * 126.58172 * 269.71246 * 19 18 16 21 21 C 1.34510 * 106.84249 * 179.83264 * 20 19 18 22 22 O 1.34301 * 108.41913 * 0.43447 * 21 20 19 23 23 C 1.34304 * 109.47756 * 359.71696 * 22 21 20 24 24 C 1.46921 * 118.73734 * 53.86247 * 15 14 13 25 25 H 0.97005 * 119.99456 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00518 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.45637 * 58.66545 * 12 10 9 28 28 H 1.08999 * 109.44758 * 298.70312 * 12 10 9 29 29 H 1.09000 * 109.49971 * 301.41241 * 13 12 10 30 30 H 1.09003 * 109.52484 * 181.33752 * 13 12 10 31 31 H 1.09003 * 109.59056 * 185.57452 * 14 13 12 32 32 H 1.08997 * 109.59089 * 65.15045 * 14 13 12 33 33 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 34 34 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 35 35 H 1.08008 * 126.57367 * 359.97438 * 20 19 18 36 36 H 1.07999 * 125.78685 * 180.10908 * 21 20 19 37 37 H 1.08006 * 125.78838 * 179.97438 * 23 22 21 38 38 H 1.09003 * 109.58904 * 65.92633 * 24 15 14 39 39 H 1.08995 * 109.58652 * 186.35027 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9693 -3.5508 -0.5877 12 6 1.1810 -4.7530 -0.6091 13 6 1.9571 -6.0716 -0.6395 14 6 2.3169 -6.4808 0.7921 15 7 3.0360 -5.3720 1.4343 16 6 4.2386 -5.5744 2.0082 17 8 4.8199 -4.6521 2.5395 18 6 4.8585 -6.9480 1.9946 19 6 6.1918 -6.9043 2.6954 20 6 7.4482 -6.6455 2.1008 21 6 8.3636 -6.6989 3.0850 22 8 7.7330 -6.9842 4.2359 23 6 6.4158 -7.1098 4.0057 24 6 2.4164 -4.0400 1.4445 25 1 -0.4849 0.8401 -0.0004 26 1 0.3554 -2.3881 -0.0002 27 1 0.9023 -4.4721 -1.6247 28 1 0.2811 -4.8750 -0.0063 29 1 2.8698 -5.9432 -1.2215 30 1 1.3410 -6.8466 -1.0955 31 1 2.9536 -7.3653 0.7703 32 1 1.4061 -6.6975 1.3501 33 1 4.2003 -7.6487 2.5084 34 1 5.0006 -7.2722 0.9636 35 1 7.6365 -6.4415 1.0570 36 1 9.4261 -6.5443 2.9684 37 1 5.6640 -7.3377 4.7469 38 1 1.5133 -4.0616 2.0546 39 1 3.1186 -3.3134 1.8532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998993926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:03 Heat of formation + Delta-G solvation = -8.894555 kcal Electronic energy + Delta-G solvation = -21523.801539 eV Core-core repulsion = 18240.371590 eV Total energy + Delta-G solvation = -3283.429949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57792 -39.83567 -37.29025 -34.47291 -33.99000 -32.28402 -31.19020 -30.45213 -28.66456 -27.52473 -24.82356 -23.93130 -21.87555 -21.65190 -21.03948 -19.96557 -18.72726 -17.43656 -17.08001 -17.01141 -15.87934 -15.43724 -15.33296 -14.82102 -14.54456 -14.18097 -13.93456 -13.53637 -13.25272 -13.23073 -12.83675 -12.61704 -12.53611 -12.36436 -12.16861 -11.57288 -11.34398 -11.02332 -10.82116 -10.66035 -10.56552 -10.22301 -9.91158 -9.82141 -9.70306 -9.39699 -9.04655 -8.56107 -8.29995 -6.98610 -5.77755 -3.07416 1.74013 2.50510 2.88190 3.09917 3.36421 3.47054 3.50431 3.52775 4.58901 4.66319 4.70631 4.76490 4.92532 4.96441 5.09122 5.25828 5.30468 5.38052 5.49433 5.54949 5.59020 5.68995 5.79904 5.93280 5.94623 6.04969 6.10256 6.17403 6.22258 6.35542 6.42606 6.51546 6.76768 6.84504 7.03203 7.06360 7.71677 7.72430 8.40211 8.47807 9.52335 10.06415 10.41752 11.44518 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.004218 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.170791 B = 6636.591323 C = 7727.669634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.107 3.893 15 N -0.609 5.609 16 C 0.508 3.492 17 O -0.533 6.533 18 C -0.070 4.070 19 C -0.160 4.160 20 C -0.198 4.198 21 C -0.047 4.047 22 O -0.178 6.178 23 C -0.030 4.030 24 C 0.093 3.907 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.200 0.800 37 H 0.199 0.801 38 H 0.060 0.940 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 -20.225 2.808 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.344 5.344 16 C 0.295 3.705 17 O -0.410 6.410 18 C -0.110 4.110 19 C -0.162 4.162 20 C -0.217 4.217 21 C -0.114 4.114 22 O -0.074 6.074 23 C -0.098 4.098 24 C -0.032 4.032 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.163 0.837 36 H 0.217 0.783 37 H 0.216 0.784 38 H 0.078 0.922 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.563 -19.571 3.356 22.039 hybrid contribution -0.066 1.021 -0.253 1.054 sum 9.498 -18.550 3.103 21.070 Atomic orbital electron populations 1.69654 1.05121 1.25865 1.57467 1.24735 0.95503 0.97719 1.02645 0.86268 0.78569 0.83394 0.78005 1.21208 1.21648 1.21111 1.19231 0.91067 0.84017 1.43096 0.91136 1.42373 1.05788 0.99615 1.88148 1.20578 0.94842 0.86391 0.92440 0.93187 1.21821 0.98702 0.94150 1.01780 1.21883 1.00913 0.98207 0.95904 1.21737 0.96973 0.89069 0.93874 1.48314 1.18896 1.11121 1.56037 1.20521 0.80891 0.90463 0.78575 1.90719 1.61421 1.44366 1.44452 1.20045 0.92999 0.95825 1.02124 1.19837 0.94945 1.07288 0.94080 1.21680 0.92159 1.07076 1.00788 1.23923 0.98741 1.05968 0.82745 1.84044 1.19698 1.69064 1.34601 1.23750 0.82921 1.06041 0.97072 1.22839 0.97649 0.81786 1.00901 0.93421 0.78091 0.91451 0.92051 0.91619 0.91029 0.90298 0.91441 0.88396 0.88163 0.83661 0.78296 0.78440 0.92202 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.86 9.93 -15.06 -0.15 -7.01 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -18.02 5.12 -53.09 -0.27 -18.29 16 10 C 0.17 3.37 2.94 -67.58 -0.20 3.17 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.96 5.35 -26.69 -0.14 -2.10 16 13 C -0.13 -1.49 6.08 -26.62 -0.16 -1.65 16 14 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 15 N -0.61 -9.21 2.97 -172.50 -0.51 -9.72 16 16 C 0.51 8.01 7.69 -10.98 -0.08 7.93 16 17 O -0.53 -11.01 15.45 5.56 0.09 -10.92 16 18 C -0.07 -0.76 4.56 -29.03 -0.13 -0.89 16 19 C -0.16 -1.97 4.66 -104.74 -0.49 -2.46 16 20 C -0.20 -2.35 10.87 -39.70 -0.43 -2.78 16 21 C -0.05 -0.50 12.09 29.41 0.36 -0.14 16 22 O -0.18 -2.16 10.65 5.71 0.06 -2.10 16 23 C -0.03 -0.35 12.01 29.41 0.35 0.01 16 24 C 0.09 1.78 6.05 -3.49 -0.02 1.76 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 26 H 0.39 10.11 7.80 -40.82 -0.32 9.80 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.79 7.94 -51.93 -0.41 0.38 16 34 H 0.10 0.90 7.69 -51.93 -0.40 0.50 16 35 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 2.04 7.00 -51.93 -0.36 1.67 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -34.67 325.80 -6.82 -41.49 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.57 Total: 7.70 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.22 Total: -3.44 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.06 Total: -55.50 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.15 Total: -13.02 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.67 -6.82 -41.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998993926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.596 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds