Wall clock time and date at job start Tue Mar 31 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00364 * 2 1 4 4 H 1.48503 * 109.46836 * 239.99890 * 3 2 1 5 5 H 1.48496 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47359 * 119.99909 * 3 2 1 7 7 C 1.38818 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99995 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49785 * 325.07143 * 10 9 7 12 12 C 1.53037 * 109.50047 * 204.99963 * 10 9 7 13 13 C 1.53036 * 109.53626 * 178.68745 * 12 10 9 14 14 C 1.53183 * 109.31530 * 61.36923 * 13 12 10 15 15 N 1.46934 * 108.77358 * 305.36258 * 14 13 12 16 16 C 1.34777 * 120.63116 * 233.58273 * 15 14 13 17 17 O 1.21274 * 120.00135 * 180.27770 * 16 15 14 18 18 C 1.50706 * 119.99766 * 0.02562 * 16 15 14 19 19 C 1.50699 * 109.46817 * 179.97438 * 18 16 15 20 20 C 1.41387 * 126.58172 * 269.71246 * 19 18 16 21 21 C 1.34510 * 106.84249 * 179.83264 * 20 19 18 22 22 O 1.34301 * 108.41913 * 0.43447 * 21 20 19 23 23 C 1.34304 * 109.47756 * 359.71696 * 22 21 20 24 24 C 1.46921 * 118.73734 * 53.86247 * 15 14 13 25 25 H 0.97005 * 119.99456 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00518 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.45637 * 58.66545 * 12 10 9 28 28 H 1.08999 * 109.44758 * 298.70312 * 12 10 9 29 29 H 1.09000 * 109.49971 * 301.41241 * 13 12 10 30 30 H 1.09003 * 109.52484 * 181.33752 * 13 12 10 31 31 H 1.09003 * 109.59056 * 185.57452 * 14 13 12 32 32 H 1.08997 * 109.59089 * 65.15045 * 14 13 12 33 33 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 34 34 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 35 35 H 1.08008 * 126.57367 * 359.97438 * 20 19 18 36 36 H 1.07999 * 125.78685 * 180.10908 * 21 20 19 37 37 H 1.08006 * 125.78838 * 179.97438 * 23 22 21 38 38 H 1.09003 * 109.58904 * 65.92633 * 24 15 14 39 39 H 1.08995 * 109.58652 * 186.35027 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9693 -3.5508 -0.5877 12 6 1.1810 -4.7530 -0.6091 13 6 1.9571 -6.0716 -0.6395 14 6 2.3169 -6.4808 0.7921 15 7 3.0360 -5.3720 1.4343 16 6 4.2386 -5.5744 2.0082 17 8 4.8199 -4.6521 2.5395 18 6 4.8585 -6.9480 1.9946 19 6 6.1918 -6.9043 2.6954 20 6 7.4482 -6.6455 2.1008 21 6 8.3636 -6.6989 3.0850 22 8 7.7330 -6.9842 4.2359 23 6 6.4158 -7.1098 4.0057 24 6 2.4164 -4.0400 1.4445 25 1 -0.4849 0.8401 -0.0004 26 1 0.3554 -2.3881 -0.0002 27 1 0.9023 -4.4721 -1.6247 28 1 0.2811 -4.8750 -0.0063 29 1 2.8698 -5.9432 -1.2215 30 1 1.3410 -6.8466 -1.0955 31 1 2.9536 -7.3653 0.7703 32 1 1.4061 -6.6975 1.3501 33 1 4.2003 -7.6487 2.5084 34 1 5.0006 -7.2722 0.9636 35 1 7.6365 -6.4415 1.0570 36 1 9.4261 -6.5443 2.9684 37 1 5.6640 -7.3377 4.7469 38 1 1.5133 -4.0616 2.0546 39 1 3.1186 -3.3134 1.8532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998993926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:02 Heat of formation + Delta-G solvation = -32.878622 kcal Electronic energy + Delta-G solvation = -21524.841566 eV Core-core repulsion = 18240.371590 eV Total energy + Delta-G solvation = -3284.469977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.41731 -41.08637 -38.67227 -36.19900 -34.94690 -33.88292 -32.70488 -31.42980 -30.12338 -28.66748 -26.04159 -25.86579 -23.23156 -22.49202 -22.17175 -21.19242 -19.90564 -19.13126 -18.33375 -18.17057 -16.93444 -16.72330 -16.53847 -16.35979 -15.60955 -15.54106 -15.39161 -15.18102 -14.67542 -14.32037 -13.97183 -13.68673 -13.65216 -13.61503 -13.37404 -13.01521 -12.89311 -12.51038 -12.40368 -12.26831 -11.99203 -11.87770 -11.64757 -11.34084 -11.12143 -10.97522 -10.46757 -9.70239 -9.40182 -9.01385 -8.00597 -5.29687 0.90238 1.42285 1.45151 1.51450 1.59465 1.69665 2.20697 2.35360 2.52374 3.32468 3.69802 3.76205 3.91015 3.96845 4.05529 4.10536 4.17046 4.28991 4.36336 4.40169 4.56023 4.60210 4.66239 4.77899 4.82519 4.90182 4.94917 5.08028 5.13007 5.17013 5.32432 5.39299 5.42497 5.49115 5.59623 5.63043 6.22250 6.22498 6.54920 7.26974 7.28819 8.01671 8.26773 9.21937 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.004218 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.170791 B = 6636.591323 C = 7727.669634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.731 5.731 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.101 3.899 15 N -0.607 5.607 16 C 0.502 3.498 17 O -0.594 6.594 18 C -0.057 4.057 19 C -0.183 4.183 20 C -0.224 4.224 21 C -0.048 4.048 22 O -0.192 6.192 23 C -0.040 4.040 24 C 0.108 3.892 25 H 0.254 0.746 26 H 0.377 0.623 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.232 0.768 37 H 0.222 0.778 38 H 0.056 0.944 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 -22.952 2.438 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.371 5.371 10 C 0.057 3.943 11 H 0.047 0.953 12 C -0.157 4.157 13 C -0.161 4.161 14 C -0.020 4.020 15 N -0.341 5.341 16 C 0.292 3.708 17 O -0.474 6.474 18 C -0.096 4.096 19 C -0.184 4.184 20 C -0.243 4.243 21 C -0.115 4.115 22 O -0.088 6.088 23 C -0.108 4.108 24 C -0.018 4.018 25 H 0.062 0.938 26 H 0.210 0.790 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.248 0.752 37 H 0.239 0.761 38 H 0.074 0.926 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.981 -22.375 2.965 24.679 hybrid contribution -0.147 1.819 -0.132 1.829 sum 9.834 -20.556 2.833 22.963 Atomic orbital electron populations 1.69782 1.06299 1.26286 1.58973 1.25467 0.96382 1.00738 1.03270 0.85315 0.77420 0.79646 0.78026 1.20318 1.21348 1.21123 1.19471 0.90960 0.85606 1.41945 0.91923 1.42520 1.05521 1.00682 1.88362 1.20754 0.94554 0.86045 0.92909 0.95282 1.21745 0.98510 0.94741 1.00723 1.21885 1.00842 0.96530 0.96798 1.22158 0.98278 0.88626 0.92981 1.48368 1.19101 1.10421 1.56168 1.21499 0.80336 0.91900 0.77110 1.90694 1.62943 1.46746 1.47049 1.20098 0.92545 0.92758 1.04188 1.20164 0.95702 1.07876 0.94684 1.21994 0.92711 1.07998 1.01608 1.24600 1.00132 1.04671 0.82060 1.84046 1.20186 1.69220 1.35304 1.24312 0.83178 1.05634 0.97655 1.22222 0.96375 0.83665 0.99564 0.93757 0.79022 0.92267 0.91547 0.91798 0.87026 0.85827 0.89707 0.84582 0.85461 0.82959 0.75161 0.76128 0.92587 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.53 13.06 21.65 0.28 -59.24 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.97 47.99 29.55 68.60 2.03 50.01 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.25 -14.47 9.93 84.04 0.83 -13.64 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -37.88 5.12 -321.86 -1.65 -39.53 16 10 C 0.17 6.80 2.94 45.21 0.13 6.93 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.12 -3.53 5.35 30.62 0.16 -3.36 16 13 C -0.12 -2.33 6.08 30.67 0.19 -2.14 16 14 C 0.10 1.73 6.34 86.36 0.55 2.28 16 15 N -0.61 -17.46 2.97 -818.07 -2.43 -19.88 16 16 C 0.50 15.23 7.69 87.66 0.67 15.90 16 17 O -0.59 -25.14 15.45 -3.01 -0.05 -25.19 16 18 C -0.06 -1.04 4.56 29.10 0.13 -0.91 16 19 C -0.18 -4.16 4.66 -19.94 -0.09 -4.26 16 20 C -0.22 -5.05 10.87 22.19 0.24 -4.81 16 21 C -0.05 -0.96 12.09 66.97 0.81 -0.15 16 22 O -0.19 -4.42 10.65 -2.48 -0.03 -4.45 16 23 C -0.04 -0.87 12.01 66.97 0.80 -0.07 16 24 C 0.11 4.24 6.05 86.51 0.52 4.76 16 25 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 26 H 0.38 20.44 7.80 -92.71 -0.72 19.72 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.12 1.12 5.93 -2.39 -0.01 1.10 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.14 1.48 7.94 -2.39 -0.02 1.46 16 34 H 0.13 1.69 7.69 -2.39 -0.02 1.67 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.23 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.22 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 2.05 7.00 -2.39 -0.02 2.03 16 Total: -1.00 -80.21 325.80 3.92 -76.30 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.33 Total: 24.86 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.42 Total: -2.88 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -3.79 Total: -118.65 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.07 Total: -29.63 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.01 kcal Total: -80.21 3.92 -76.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998993926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.417 kcal (2) G-P(sol) polarization free energy of solvation -80.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds