Wall clock time and date at job start Tue Mar 31 2020 00:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86807 * 120.00094 * 2 1 4 4 H 1.48494 * 109.46785 * 270.00081 * 3 2 1 5 5 H 1.48498 * 109.46793 * 30.00022 * 3 2 1 6 6 H 1.48500 * 109.47066 * 150.00170 * 3 2 1 7 7 C 1.38819 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99775 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99704 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.52419 * 34.92346 * 10 9 7 12 12 C 1.53046 * 109.49630 * 155.00148 * 10 9 7 13 13 C 1.53039 * 109.52798 * 181.31171 * 12 10 9 14 14 C 1.53200 * 109.31160 * 298.64112 * 13 12 10 15 15 N 1.46931 * 108.77279 * 54.63574 * 14 13 12 16 16 C 1.34771 * 120.63030 * 126.37310 * 15 14 13 17 17 O 1.21285 * 119.99986 * 180.02562 * 16 15 14 18 18 C 1.50704 * 120.00168 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47429 * 180.02562 * 18 16 15 20 20 C 1.41377 * 126.57817 * 269.71708 * 19 18 16 21 21 C 1.34515 * 106.83960 * 179.83325 * 20 19 18 22 22 O 1.34301 * 108.41927 * 0.42551 * 21 20 19 23 23 C 1.34302 * 109.47617 * 359.72454 * 22 21 20 24 24 C 1.46928 * 118.73792 * 306.39072 * 15 14 13 25 25 H 0.97001 * 120.00347 * 0.02562 * 1 2 3 26 26 H 0.97005 * 120.00354 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.46115 * 61.29624 * 12 10 9 28 28 H 1.09004 * 109.45806 * 301.32509 * 12 10 9 29 29 H 1.08997 * 109.49901 * 58.58690 * 13 12 10 30 30 H 1.08996 * 109.49878 * 178.65713 * 13 12 10 31 31 H 1.08998 * 109.58358 * 174.41666 * 14 13 12 32 32 H 1.08999 * 109.58464 * 294.84968 * 14 13 12 33 33 H 1.09002 * 109.46687 * 300.00143 * 18 16 15 34 34 H 1.08996 * 109.47231 * 59.99576 * 18 16 15 35 35 H 1.08003 * 126.57834 * 359.97438 * 20 19 18 36 36 H 1.08004 * 125.78763 * 180.18813 * 21 20 19 37 37 H 1.08001 * 125.78513 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.58766 * 173.40097 * 24 15 14 39 39 H 1.09002 * 109.58364 * 293.68193 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2021 0.0000 10 6 4.1120 -2.4709 0.0011 11 1 3.5645 -3.2081 -0.5859 12 6 5.4996 -2.2601 -0.6093 13 6 6.2533 -3.5917 -0.6385 14 6 6.4280 -4.1065 0.7939 15 7 5.1083 -4.1739 1.4364 16 6 4.6818 -5.3160 2.0108 17 8 3.5902 -5.3590 2.5375 18 6 5.5608 -6.5401 1.9976 19 6 4.8559 -7.6724 2.6990 20 6 4.9294 -7.9868 4.0754 21 6 4.1471 -9.0633 4.2716 22 8 3.6142 -9.4212 3.0920 23 6 4.0405 -8.5813 2.1347 24 6 4.2624 -2.9726 1.4404 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3620 -0.0004 27 1 6.0557 -1.5412 -0.0076 28 1 5.3953 -1.8796 -1.6254 29 1 5.6855 -4.3185 -1.2194 30 1 7.2322 -3.4458 -1.0950 31 1 6.8753 -5.1002 0.7730 32 1 7.0713 -3.4254 1.3510 33 1 5.7701 -6.8259 0.9667 34 1 6.4969 -6.3208 2.5109 35 1 5.5018 -7.4617 4.8259 36 1 3.9794 -9.5584 5.2167 37 1 3.7736 -8.6275 1.0892 38 1 3.2810 -3.2181 1.8462 39 1 4.7279 -2.1999 2.0523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998993927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:05 Heat of formation + Delta-G solvation = -4.267801 kcal Electronic energy + Delta-G solvation = -21559.546766 eV Core-core repulsion = 18276.317448 eV Total energy + Delta-G solvation = -3283.229318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.57464 -39.89570 -37.39885 -34.62263 -34.00346 -32.32520 -31.34459 -30.51660 -29.02460 -27.69810 -24.92035 -23.78761 -21.75287 -21.64974 -21.07126 -20.07181 -18.80378 -17.56088 -17.43551 -17.03022 -15.87683 -15.47101 -15.40000 -14.72847 -14.60149 -14.28541 -14.20846 -13.55899 -13.33068 -13.07786 -12.84299 -12.61670 -12.59060 -12.48925 -12.37433 -11.60719 -11.59046 -11.20223 -10.93605 -10.74241 -10.65451 -10.31021 -9.92672 -9.87828 -9.59612 -9.43340 -9.09329 -8.55491 -8.36820 -7.29439 -5.77080 -3.14538 1.74859 2.49568 2.85713 3.10920 3.31449 3.36325 3.38426 3.44948 4.57709 4.64483 4.68323 4.73712 4.83569 4.94615 5.00586 5.16085 5.29338 5.34796 5.37506 5.45695 5.49099 5.63350 5.70047 5.81179 5.89587 5.94384 6.02082 6.06602 6.10753 6.23009 6.37909 6.43615 6.67785 6.74082 6.92004 7.06980 7.66553 7.98922 8.40759 8.45355 9.18792 9.90365 10.08857 11.41019 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.004067 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.754026 B = 6883.244002 C = 7664.990720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.743 5.743 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.610 5.610 16 C 0.509 3.491 17 O -0.529 6.529 18 C -0.069 4.069 19 C -0.162 4.162 20 C -0.199 4.199 21 C -0.046 4.046 22 O -0.178 6.178 23 C -0.027 4.027 24 C 0.093 3.907 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.200 0.800 37 H 0.200 0.800 38 H 0.094 0.906 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.871 -15.437 3.234 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.345 5.345 16 C 0.296 3.704 17 O -0.405 6.405 18 C -0.109 4.109 19 C -0.164 4.164 20 C -0.218 4.218 21 C -0.114 4.114 22 O -0.073 6.073 23 C -0.095 4.095 24 C -0.031 4.031 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.162 0.838 36 H 0.217 0.783 37 H 0.217 0.783 38 H 0.112 0.888 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.803 -15.738 3.467 23.282 hybrid contribution 0.722 1.598 0.122 1.758 sum 17.524 -14.140 3.590 22.802 Atomic orbital electron populations 1.69701 1.05139 1.25862 1.57116 1.24680 0.95211 0.97186 1.01785 0.86555 0.79206 0.85033 0.77739 1.21055 1.21696 1.20331 1.19105 0.80405 0.94869 1.43428 0.89082 1.42733 1.04133 1.01741 1.89892 1.20456 0.90909 0.89463 0.92909 0.92294 1.21865 0.96746 0.96465 1.01743 1.21877 1.00752 0.98194 0.96051 1.21739 0.84560 1.01655 0.93730 1.48268 1.18041 1.11952 1.56249 1.20538 0.87371 0.84001 0.78520 1.90740 1.21750 1.83746 1.44262 1.20033 0.98334 0.90849 1.01683 1.19818 1.03518 0.98766 0.94282 1.21651 1.04487 0.99430 0.96240 1.23921 0.99248 0.99655 0.88554 1.84052 1.58124 1.48511 1.16615 1.23789 0.99320 0.92216 0.94134 1.22653 0.95714 0.84381 1.00395 0.92993 0.80490 0.92174 0.91340 0.91385 0.90936 0.90154 0.91500 0.88276 0.88285 0.83752 0.78319 0.78342 0.88784 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.25 -7.07 10.41 -15.06 -0.16 -7.23 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.74 -17.44 4.93 -53.32 -0.26 -17.70 16 10 C 0.17 3.29 2.92 -67.82 -0.20 3.10 16 11 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 12 C -0.13 -1.85 5.36 -26.69 -0.14 -2.00 16 13 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 14 C 0.11 1.08 6.34 -3.70 -0.02 1.05 16 15 N -0.61 -8.93 2.97 -172.78 -0.51 -9.45 16 16 C 0.51 7.90 7.69 -10.99 -0.08 7.81 16 17 O -0.53 -10.91 15.45 5.55 0.09 -10.83 16 18 C -0.07 -0.74 4.56 -29.03 -0.13 -0.87 16 19 C -0.16 -1.99 4.66 -104.75 -0.49 -2.47 16 20 C -0.20 -2.31 10.87 -39.70 -0.43 -2.74 16 21 C -0.05 -0.49 12.09 29.42 0.36 -0.14 16 22 O -0.18 -2.18 10.65 5.72 0.06 -2.12 16 23 C -0.03 -0.32 12.01 29.41 0.35 0.04 16 24 C 0.09 1.72 6.01 -3.73 -0.02 1.70 16 25 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 26 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 34 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.20 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 2.12 7.00 -51.93 -0.36 1.76 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -35.90 322.65 -6.47 -42.37 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.53 Total: 7.52 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.23 Total: -3.16 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.00 Total: -55.98 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.15 Total: -12.94 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.90 -6.47 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998993927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.101 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds