Wall clock time and date at job start Tue Mar 31 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86807 * 120.00094 * 2 1 4 4 H 1.48494 * 109.46785 * 270.00081 * 3 2 1 5 5 H 1.48498 * 109.46793 * 30.00022 * 3 2 1 6 6 H 1.48500 * 109.47066 * 150.00170 * 3 2 1 7 7 C 1.38819 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99775 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99704 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.52419 * 34.92346 * 10 9 7 12 12 C 1.53046 * 109.49630 * 155.00148 * 10 9 7 13 13 C 1.53039 * 109.52798 * 181.31171 * 12 10 9 14 14 C 1.53200 * 109.31160 * 298.64112 * 13 12 10 15 15 N 1.46931 * 108.77279 * 54.63574 * 14 13 12 16 16 C 1.34771 * 120.63030 * 126.37310 * 15 14 13 17 17 O 1.21285 * 119.99986 * 180.02562 * 16 15 14 18 18 C 1.50704 * 120.00168 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47429 * 180.02562 * 18 16 15 20 20 C 1.41377 * 126.57817 * 269.71708 * 19 18 16 21 21 C 1.34515 * 106.83960 * 179.83325 * 20 19 18 22 22 O 1.34301 * 108.41927 * 0.42551 * 21 20 19 23 23 C 1.34302 * 109.47617 * 359.72454 * 22 21 20 24 24 C 1.46928 * 118.73792 * 306.39072 * 15 14 13 25 25 H 0.97001 * 120.00347 * 0.02562 * 1 2 3 26 26 H 0.97005 * 120.00354 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.46115 * 61.29624 * 12 10 9 28 28 H 1.09004 * 109.45806 * 301.32509 * 12 10 9 29 29 H 1.08997 * 109.49901 * 58.58690 * 13 12 10 30 30 H 1.08996 * 109.49878 * 178.65713 * 13 12 10 31 31 H 1.08998 * 109.58358 * 174.41666 * 14 13 12 32 32 H 1.08999 * 109.58464 * 294.84968 * 14 13 12 33 33 H 1.09002 * 109.46687 * 300.00143 * 18 16 15 34 34 H 1.08996 * 109.47231 * 59.99576 * 18 16 15 35 35 H 1.08003 * 126.57834 * 359.97438 * 20 19 18 36 36 H 1.08004 * 125.78763 * 180.18813 * 21 20 19 37 37 H 1.08001 * 125.78513 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.58766 * 173.40097 * 24 15 14 39 39 H 1.09002 * 109.58364 * 293.68193 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2021 0.0000 10 6 4.1120 -2.4709 0.0011 11 1 3.5645 -3.2081 -0.5859 12 6 5.4996 -2.2601 -0.6093 13 6 6.2533 -3.5917 -0.6385 14 6 6.4280 -4.1065 0.7939 15 7 5.1083 -4.1739 1.4364 16 6 4.6818 -5.3160 2.0108 17 8 3.5902 -5.3590 2.5375 18 6 5.5608 -6.5401 1.9976 19 6 4.8559 -7.6724 2.6990 20 6 4.9294 -7.9868 4.0754 21 6 4.1471 -9.0633 4.2716 22 8 3.6142 -9.4212 3.0920 23 6 4.0405 -8.5813 2.1347 24 6 4.2624 -2.9726 1.4404 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3620 -0.0004 27 1 6.0557 -1.5412 -0.0076 28 1 5.3953 -1.8796 -1.6254 29 1 5.6855 -4.3185 -1.2194 30 1 7.2322 -3.4458 -1.0950 31 1 6.8753 -5.1002 0.7730 32 1 7.0713 -3.4254 1.3510 33 1 5.7701 -6.8259 0.9667 34 1 6.4969 -6.3208 2.5109 35 1 5.5018 -7.4617 4.8259 36 1 3.9794 -9.5584 5.2167 37 1 3.7736 -8.6275 1.0892 38 1 3.2810 -3.2181 1.8462 39 1 4.7279 -2.1999 2.0523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998993927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:04 Heat of formation + Delta-G solvation = -30.328049 kcal Electronic energy + Delta-G solvation = -21560.676823 eV Core-core repulsion = 18276.317448 eV Total energy + Delta-G solvation = -3284.359375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.42598 -41.11506 -38.75234 -36.30506 -34.95763 -33.97576 -32.88371 -31.52211 -30.45415 -28.74646 -26.07088 -25.62434 -23.10057 -22.48684 -22.28697 -21.28578 -20.00329 -19.51229 -18.34090 -18.17471 -16.92486 -16.72160 -16.57250 -16.41767 -15.80346 -15.49607 -15.42199 -15.01918 -14.66438 -14.41820 -14.13706 -13.82620 -13.69887 -13.62974 -13.51983 -13.11056 -12.95834 -12.53605 -12.40846 -12.17066 -11.91439 -11.85937 -11.73417 -11.34590 -11.14417 -10.99099 -10.47802 -9.80441 -9.40872 -9.24605 -8.06215 -5.42394 0.89239 1.35228 1.41103 1.48034 1.58570 1.68917 2.19625 2.34853 2.45818 3.24613 3.53453 3.68946 3.87835 3.95524 4.01874 4.10439 4.14955 4.20688 4.31699 4.37398 4.54927 4.59908 4.65696 4.75527 4.81221 4.88528 4.95354 5.06102 5.12250 5.16801 5.31498 5.37898 5.47425 5.53865 5.61352 5.73588 6.17777 6.21817 6.53146 7.03090 7.26640 7.76276 7.98186 9.15825 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.004067 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.754026 B = 6883.244002 C = 7664.990720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.239 4.239 8 H 0.043 0.957 9 N -0.745 5.745 10 C 0.170 3.830 11 H 0.029 0.971 12 C -0.122 4.122 13 C -0.123 4.123 14 C 0.099 3.901 15 N -0.608 5.608 16 C 0.500 3.500 17 O -0.595 6.595 18 C -0.056 4.056 19 C -0.182 4.182 20 C -0.221 4.221 21 C -0.049 4.049 22 O -0.193 6.193 23 C -0.044 4.044 24 C 0.105 3.895 25 H 0.259 0.741 26 H 0.370 0.630 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.157 0.843 36 H 0.233 0.767 37 H 0.218 0.782 38 H 0.037 0.963 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.437 -15.420 2.870 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.171 1.171 7 C -0.370 4.370 8 H 0.061 0.939 9 N -0.388 5.388 10 C 0.060 3.940 11 H 0.047 0.953 12 C -0.160 4.160 13 C -0.162 4.162 14 C -0.022 4.022 15 N -0.341 5.341 16 C 0.290 3.710 17 O -0.475 6.475 18 C -0.095 4.095 19 C -0.184 4.184 20 C -0.240 4.240 21 C -0.116 4.116 22 O -0.089 6.089 23 C -0.112 4.112 24 C -0.021 4.021 25 H 0.068 0.932 26 H 0.204 0.796 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.175 0.825 36 H 0.249 0.751 37 H 0.234 0.766 38 H 0.056 0.944 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.475 -15.761 3.082 26.816 hybrid contribution -0.752 1.468 0.258 1.670 sum 20.723 -14.292 3.340 25.394 Atomic orbital electron populations 1.69915 1.07506 1.26929 1.59237 1.25631 0.96183 1.01726 1.02039 0.85283 0.78617 0.78664 0.78397 1.19806 1.22330 1.17102 1.18963 0.82832 0.93113 1.42133 0.93938 1.42671 1.02294 1.03851 1.90000 1.20650 0.93269 0.86915 0.93131 0.95258 1.21811 0.93532 0.99451 1.01255 1.21896 1.02118 0.95516 0.96624 1.22192 0.82063 1.04809 0.93100 1.48348 1.19216 1.10320 1.56225 1.21530 0.87090 0.85245 0.77102 1.90717 1.24850 1.84830 1.47116 1.20096 0.97890 0.87463 1.04035 1.20175 1.04034 0.99281 0.94871 1.21991 1.05354 1.00129 0.96567 1.24646 0.98246 0.99545 0.89119 1.84047 1.58514 1.48994 1.17321 1.24287 0.99383 0.92415 0.95079 1.22102 0.94130 0.86367 0.99471 0.93209 0.79572 0.90667 0.91400 0.91858 0.86696 0.85959 0.89474 0.84895 0.84964 0.82519 0.75072 0.76579 0.94394 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.55 13.97 21.65 0.30 -65.25 16 2 C -0.06 -3.92 5.50 84.87 0.47 -3.45 16 3 Si 0.96 45.84 27.74 68.60 1.90 47.74 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.25 -10.37 6.52 99.48 0.65 -9.72 16 7 C -0.24 -14.31 10.41 84.04 0.88 -13.44 16 8 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 9 N -0.74 -35.33 4.93 -322.62 -1.59 -36.92 16 10 C 0.17 6.50 2.92 45.06 0.13 6.63 16 11 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 12 C -0.12 -3.13 5.36 30.62 0.16 -2.97 16 13 C -0.12 -2.02 6.08 30.67 0.19 -1.84 16 14 C 0.10 1.53 6.34 86.36 0.55 2.08 16 15 N -0.61 -16.89 2.97 -818.94 -2.43 -19.33 16 16 C 0.50 15.21 7.69 87.66 0.67 15.88 16 17 O -0.59 -25.72 15.45 -3.04 -0.05 -25.76 16 18 C -0.06 -1.02 4.56 29.10 0.13 -0.89 16 19 C -0.18 -4.22 4.66 -19.95 -0.09 -4.31 16 20 C -0.22 -4.90 10.87 22.19 0.24 -4.66 16 21 C -0.05 -0.99 12.09 66.97 0.81 -0.18 16 22 O -0.19 -4.66 10.65 -2.45 -0.03 -4.69 16 23 C -0.04 -1.02 12.01 66.97 0.80 -0.22 16 24 C 0.11 3.99 6.01 86.35 0.52 4.51 16 25 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 26 H 0.37 16.27 5.66 -92.70 -0.52 15.75 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.12 0.94 5.93 -2.39 -0.01 0.93 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.13 1.55 7.69 -2.39 -0.02 1.53 16 34 H 0.13 1.58 7.94 -2.39 -0.02 1.56 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.23 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.22 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.04 1.85 7.00 -2.39 -0.02 1.83 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -86.61 322.65 4.04 -82.57 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.47 Total: 24.49 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.46 Total: -2.85 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -3.72 Total: -121.50 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.07 Total: -30.45 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -86.61 4.04 -82.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998993927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.239 kcal (2) G-P(sol) polarization free energy of solvation -86.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds