Wall clock time and date at job start Tue Mar 31 2020 00:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.49453 * 325.00019 * 10 9 7 12 12 C 1.53043 * 109.49889 * 204.93418 * 10 9 7 13 13 C 1.53041 * 109.53788 * 178.68066 * 12 10 9 14 14 C 1.53183 * 109.31293 * 61.36577 * 13 12 10 15 15 N 1.46929 * 108.77910 * 305.36396 * 14 13 12 16 16 C 1.34769 * 120.63241 * 233.61041 * 15 14 13 17 17 O 1.21283 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00116 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.34513 * 125.78910 * 89.99850 * 19 18 16 21 21 C 1.41376 * 106.84261 * 179.97438 * 20 19 18 22 22 C 1.34514 * 106.84039 * 0.02562 * 21 20 19 23 23 O 1.34296 * 108.41978 * 359.73882 * 22 21 20 24 24 C 1.46933 * 118.76219 * 53.58375 * 15 14 13 25 25 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.45828 * 298.70214 * 12 10 9 28 28 H 1.09004 * 109.45670 * 58.67707 * 12 10 9 29 29 H 1.09003 * 109.49409 * 181.32068 * 13 12 10 30 30 H 1.09002 * 109.49549 * 301.38135 * 13 12 10 31 31 H 1.09003 * 109.58721 * 65.14912 * 14 13 12 32 32 H 1.09004 * 109.58828 * 185.43274 * 14 13 12 33 33 H 1.09003 * 109.47034 * 299.99749 * 18 16 15 34 34 H 1.09003 * 109.47140 * 59.99578 * 18 16 15 35 35 H 1.07998 * 126.57990 * 359.96751 * 20 19 18 36 36 H 1.08007 * 126.57958 * 180.02562 * 21 20 19 37 37 H 1.07999 * 125.78798 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.61577 * 186.64475 * 24 15 14 39 39 H 1.08999 * 109.55901 * 66.21882 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9665 -3.5523 -0.5884 12 6 1.1780 -4.7546 -0.5977 13 6 1.9540 -6.0733 -0.6283 14 6 2.3210 -6.4786 0.8026 15 7 3.0432 -5.3682 1.4383 16 6 4.2487 -5.5688 2.0063 17 8 4.8351 -4.6438 2.5274 18 6 4.8684 -6.9425 1.9938 19 6 6.2055 -6.8967 2.6873 20 6 6.4183 -7.1003 3.9998 21 6 7.8090 -6.9646 4.2152 22 6 8.3628 -6.6857 3.0215 23 8 7.3875 -6.6511 2.0989 24 6 2.4268 -4.0344 1.4428 25 1 -0.4849 0.8401 0.0004 26 1 0.3555 -2.3880 0.0092 27 1 0.2810 -4.8751 0.0097 28 1 0.8946 -4.4766 -1.6128 29 1 1.3351 -6.8492 -1.0789 30 1 2.8635 -5.9466 -1.2156 31 1 1.4128 -6.6937 1.3657 32 1 2.9555 -7.3647 0.7802 33 1 4.2129 -7.6414 2.5134 34 1 5.0049 -7.2701 0.9632 35 1 5.6704 -7.3242 4.7460 36 1 8.3273 -7.0655 5.1574 37 1 9.4141 -6.5222 2.8357 38 1 3.1329 -3.3063 1.8421 39 1 1.5275 -4.0501 2.0585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000516678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:44 Heat of formation + Delta-G solvation = -7.729809 kcal Electronic energy + Delta-G solvation = -21557.842679 eV Core-core repulsion = 18274.463237 eV Total energy + Delta-G solvation = -3283.379442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.58543 -39.89565 -37.32278 -34.51094 -33.20874 -32.48946 -31.96502 -31.12671 -28.50002 -27.15990 -24.82816 -23.94462 -21.90680 -21.78965 -21.04319 -20.05957 -18.83134 -17.41379 -17.17168 -17.09023 -15.88169 -15.51136 -15.41917 -14.70877 -14.33345 -14.20651 -13.95496 -13.55310 -13.27259 -13.08556 -12.85951 -12.74261 -12.58448 -12.38253 -12.33283 -11.78716 -11.36644 -11.04535 -10.85609 -10.67526 -10.59494 -10.17325 -9.93604 -9.82650 -9.78734 -9.59561 -9.08362 -8.48491 -8.35776 -7.00032 -5.78945 -3.08657 1.67342 2.56663 2.75767 2.90194 3.30980 3.44948 3.51376 3.54053 4.46712 4.57157 4.63033 4.86448 4.90256 4.97281 5.06195 5.13969 5.18539 5.23252 5.47875 5.52839 5.59028 5.75326 5.78225 5.86405 5.90829 6.01870 6.04782 6.15388 6.20059 6.33721 6.45642 6.48581 6.71832 6.82640 7.00167 7.09882 7.62472 7.72803 8.35442 8.39991 9.51375 10.05069 10.40318 11.43407 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.004250 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.225723 B = 6586.073580 C = 7671.271937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.105 3.895 15 N -0.606 5.606 16 C 0.509 3.491 17 O -0.530 6.530 18 C -0.061 4.061 19 C 0.010 3.990 20 C -0.199 4.199 21 C -0.214 4.214 22 C -0.041 4.041 23 O -0.172 6.172 24 C 0.093 3.907 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.201 0.799 38 H 0.090 0.910 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.870 -20.302 3.397 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.018 4.018 15 N -0.340 5.340 16 C 0.296 3.704 17 O -0.406 6.406 18 C -0.101 4.101 19 C -0.041 4.041 20 C -0.219 4.219 21 C -0.233 4.233 22 C -0.108 4.108 23 O -0.068 6.068 24 C -0.032 4.032 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.218 0.782 38 H 0.109 0.891 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.323 -19.564 3.351 21.930 hybrid contribution 0.114 0.934 0.326 0.996 sum 9.437 -18.630 3.677 21.206 Atomic orbital electron populations 1.69672 1.05123 1.25654 1.57585 1.24740 0.95511 0.97744 1.02646 0.86122 0.78996 0.83991 0.77180 1.20426 1.21821 1.21764 1.19327 0.91148 0.83979 1.42871 0.90995 1.42385 1.05802 0.99609 1.88099 1.20497 0.94892 0.86468 0.92469 0.93151 1.21825 0.98682 0.94083 1.01867 1.21889 1.00985 0.98281 0.95797 1.21768 0.97025 0.88890 0.94114 1.48273 1.18455 1.11190 1.56114 1.20305 0.81211 0.90020 0.78885 1.90751 1.61252 1.43986 1.44634 1.20169 0.89703 0.97243 1.02998 1.21551 0.85674 1.04499 0.92328 1.21496 0.96741 1.08276 0.95353 1.21780 0.94486 1.08040 0.99014 1.23970 0.93510 1.06001 0.87356 1.83988 1.15213 1.69404 1.38181 1.22797 0.97783 0.81522 1.01051 0.93513 0.78068 0.92003 0.91380 0.90917 0.91534 0.91210 0.90292 0.86152 0.87212 0.83677 0.83570 0.78218 0.89149 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.72 -17.90 5.12 -53.31 -0.27 -18.17 16 10 C 0.17 3.32 2.92 -67.81 -0.20 3.12 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.93 5.36 -26.69 -0.14 -2.07 16 13 C -0.13 -1.46 6.08 -26.62 -0.16 -1.62 16 14 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 15 N -0.61 -9.01 2.97 -172.77 -0.51 -9.52 16 16 C 0.51 8.01 7.69 -10.99 -0.08 7.93 16 17 O -0.53 -11.03 15.45 5.56 0.09 -10.94 16 18 C -0.06 -0.67 4.58 -29.04 -0.13 -0.80 16 19 C 0.01 0.13 5.81 -35.63 -0.21 -0.07 16 20 C -0.20 -2.48 10.81 -39.71 -0.43 -2.91 16 21 C -0.21 -2.42 10.91 -39.71 -0.43 -2.85 16 22 C -0.04 -0.45 12.09 29.42 0.36 -0.10 16 23 O -0.17 -2.39 10.65 5.73 0.06 -2.33 16 24 C 0.09 1.76 6.02 -3.71 -0.02 1.73 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.39 10.05 7.80 -40.82 -0.32 9.73 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.56 5.95 -51.93 -0.31 0.25 16 33 H 0.12 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.11 0.95 7.69 -51.93 -0.40 0.55 16 35 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16 37 H 0.20 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.09 2.04 7.01 -51.93 -0.36 1.67 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -34.88 325.79 -7.33 -42.21 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.57 Total: 7.33 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.73 Total: -3.94 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.06 Total: -55.09 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.15 Total: -13.27 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.88 -7.33 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000516678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.478 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds