Wall clock time and date at job start Tue Mar 31 2020 00:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.49453 * 325.00019 * 10 9 7 12 12 C 1.53043 * 109.49889 * 204.93418 * 10 9 7 13 13 C 1.53041 * 109.53788 * 178.68066 * 12 10 9 14 14 C 1.53183 * 109.31293 * 61.36577 * 13 12 10 15 15 N 1.46929 * 108.77910 * 305.36396 * 14 13 12 16 16 C 1.34769 * 120.63241 * 233.61041 * 15 14 13 17 17 O 1.21283 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00116 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.34513 * 125.78910 * 89.99850 * 19 18 16 21 21 C 1.41376 * 106.84261 * 179.97438 * 20 19 18 22 22 C 1.34514 * 106.84039 * 0.02562 * 21 20 19 23 23 O 1.34296 * 108.41978 * 359.73882 * 22 21 20 24 24 C 1.46933 * 118.76219 * 53.58375 * 15 14 13 25 25 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.45828 * 298.70214 * 12 10 9 28 28 H 1.09004 * 109.45670 * 58.67707 * 12 10 9 29 29 H 1.09003 * 109.49409 * 181.32068 * 13 12 10 30 30 H 1.09002 * 109.49549 * 301.38135 * 13 12 10 31 31 H 1.09003 * 109.58721 * 65.14912 * 14 13 12 32 32 H 1.09004 * 109.58828 * 185.43274 * 14 13 12 33 33 H 1.09003 * 109.47034 * 299.99749 * 18 16 15 34 34 H 1.09003 * 109.47140 * 59.99578 * 18 16 15 35 35 H 1.07998 * 126.57990 * 359.96751 * 20 19 18 36 36 H 1.08007 * 126.57958 * 180.02562 * 21 20 19 37 37 H 1.07999 * 125.78798 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.61577 * 186.64475 * 24 15 14 39 39 H 1.08999 * 109.55901 * 66.21882 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9665 -3.5523 -0.5884 12 6 1.1780 -4.7546 -0.5977 13 6 1.9540 -6.0733 -0.6283 14 6 2.3210 -6.4786 0.8026 15 7 3.0432 -5.3682 1.4383 16 6 4.2487 -5.5688 2.0063 17 8 4.8351 -4.6438 2.5274 18 6 4.8684 -6.9425 1.9938 19 6 6.2055 -6.8967 2.6873 20 6 6.4183 -7.1003 3.9998 21 6 7.8090 -6.9646 4.2152 22 6 8.3628 -6.6857 3.0215 23 8 7.3875 -6.6511 2.0989 24 6 2.4268 -4.0344 1.4428 25 1 -0.4849 0.8401 0.0004 26 1 0.3555 -2.3880 0.0092 27 1 0.2810 -4.8751 0.0097 28 1 0.8946 -4.4766 -1.6128 29 1 1.3351 -6.8492 -1.0789 30 1 2.8635 -5.9466 -1.2156 31 1 1.4128 -6.6937 1.3657 32 1 2.9555 -7.3647 0.7802 33 1 4.2129 -7.6414 2.5134 34 1 5.0049 -7.2701 0.9632 35 1 5.6704 -7.3242 4.7460 36 1 8.3273 -7.0655 5.1574 37 1 9.4141 -6.5222 2.8357 38 1 3.1329 -3.3063 1.8421 39 1 1.5275 -4.0501 2.0585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000516678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:43 Heat of formation + Delta-G solvation = -31.932741 kcal Electronic energy + Delta-G solvation = -21558.892197 eV Core-core repulsion = 18274.463237 eV Total energy + Delta-G solvation = -3284.428960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.47278 -41.13798 -38.70239 -36.22973 -34.24648 -33.89852 -32.96708 -32.69851 -30.10915 -28.21620 -26.00718 -25.87053 -23.24366 -22.67453 -22.18563 -21.27663 -20.03084 -19.14341 -18.40139 -18.21830 -17.03166 -16.78059 -16.53642 -16.40806 -15.59698 -15.48382 -15.26047 -15.22303 -14.67360 -14.17226 -13.97976 -13.72651 -13.66298 -13.60080 -13.53131 -13.10025 -12.93182 -12.67595 -12.50868 -12.19532 -12.00604 -11.88057 -11.66648 -11.34043 -11.14753 -10.93399 -10.79753 -9.74272 -9.37635 -9.02651 -8.01434 -5.30384 0.76428 1.41813 1.43124 1.53158 1.59017 1.67661 2.00583 2.25600 2.51562 3.31935 3.53520 3.70070 3.81826 4.02860 4.08735 4.15419 4.17308 4.25269 4.34000 4.38591 4.40056 4.45032 4.64909 4.77925 4.89307 4.90870 4.95361 5.02129 5.06663 5.17275 5.23216 5.39196 5.42910 5.49006 5.58325 5.63473 6.21795 6.22051 6.46613 7.16727 7.28496 8.01060 8.26178 9.21443 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.004250 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.225723 B = 6586.073580 C = 7671.271937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.166 3.834 11 H 0.028 0.972 12 C -0.119 4.119 13 C -0.123 4.123 14 C 0.098 3.902 15 N -0.603 5.603 16 C 0.502 3.498 17 O -0.594 6.594 18 C -0.049 4.049 19 C -0.018 4.018 20 C -0.212 4.212 21 C -0.229 4.229 22 C -0.047 4.047 23 O -0.195 6.195 24 C 0.108 3.892 25 H 0.253 0.747 26 H 0.378 0.622 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.234 0.766 38 H 0.042 0.958 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.319 -23.138 3.196 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.056 3.944 11 H 0.046 0.954 12 C -0.157 4.157 13 C -0.161 4.161 14 C -0.023 4.023 15 N -0.336 5.336 16 C 0.291 3.709 17 O -0.474 6.474 18 C -0.087 4.087 19 C -0.068 4.068 20 C -0.231 4.231 21 C -0.248 4.248 22 C -0.114 4.114 23 O -0.092 6.092 24 C -0.018 4.018 25 H 0.062 0.938 26 H 0.210 0.790 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.144 0.856 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.250 0.750 38 H 0.061 0.939 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.779 -22.478 3.132 24.713 hybrid contribution 0.029 1.763 0.419 1.812 sum 9.808 -20.716 3.552 23.194 Atomic orbital electron populations 1.69791 1.06266 1.26136 1.59091 1.25457 0.96385 1.00705 1.03316 0.85180 0.77940 0.80243 0.77066 1.20029 1.21256 1.21735 1.19536 0.90953 0.85600 1.41696 0.91950 1.42524 1.05543 1.00657 1.88316 1.20676 0.94605 0.86150 0.92925 0.95351 1.21749 0.98501 0.94659 1.00810 1.21895 1.00888 0.96596 0.96750 1.22219 0.98425 0.88457 0.93171 1.48313 1.18604 1.10542 1.56141 1.21265 0.80707 0.91465 0.77422 1.90723 1.62864 1.46476 1.47368 1.20286 0.88938 0.94215 1.05309 1.22023 0.86327 1.05391 0.93018 1.21877 0.97728 1.07887 0.95614 1.22175 0.94411 1.08072 1.00135 1.24745 0.94615 1.04911 0.87092 1.83974 1.16013 1.69882 1.39348 1.22176 0.96529 0.83412 0.99720 0.93761 0.78964 0.91403 0.92244 0.86852 0.91806 0.89306 0.85586 0.81923 0.84274 0.82405 0.81426 0.74964 0.93891 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.36 13.06 21.65 0.28 -59.08 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.97 48.08 29.55 68.60 2.03 50.11 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 7 C -0.25 -14.34 9.93 84.03 0.83 -13.50 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -37.68 5.12 -322.57 -1.65 -39.33 16 10 C 0.17 6.72 2.92 45.07 0.13 6.85 16 11 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 12 C -0.12 -3.47 5.36 30.62 0.16 -3.31 16 13 C -0.12 -2.27 6.08 30.67 0.19 -2.08 16 14 C 0.10 1.60 6.34 86.36 0.55 2.15 16 15 N -0.60 -17.09 2.97 -818.90 -2.43 -19.52 16 16 C 0.50 15.32 7.69 87.66 0.67 15.99 16 17 O -0.59 -25.52 15.45 -3.04 -0.05 -25.57 16 18 C -0.05 -0.91 4.58 29.10 0.13 -0.77 16 19 C -0.02 -0.43 5.81 24.83 0.14 -0.29 16 20 C -0.21 -4.97 10.81 22.19 0.24 -4.73 16 21 C -0.23 -4.86 10.91 22.19 0.24 -4.62 16 22 C -0.05 -0.98 12.09 66.97 0.81 -0.17 16 23 O -0.20 -5.22 10.65 -2.41 -0.03 -5.25 16 24 C 0.11 4.19 6.02 86.36 0.52 4.71 16 25 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.38 20.35 7.80 -92.71 -0.72 19.62 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.13 0.97 5.95 -2.39 -0.01 0.96 16 33 H 0.16 1.60 7.94 -2.39 -0.02 1.58 16 34 H 0.14 1.78 7.69 -2.39 -0.02 1.76 16 35 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.04 2.07 7.01 -2.39 -0.02 2.05 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -81.52 325.79 3.57 -77.95 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.33 Total: 23.89 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.09 Total: -3.20 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -3.80 Total: -117.93 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.07 Total: -30.82 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -81.52 3.57 -77.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000516678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.018 kcal (2) G-P(sol) polarization free energy of solvation -81.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds