Wall clock time and date at job start Tue Mar 31 2020 00:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99554 * 2 1 4 4 H 1.48510 * 109.47220 * 240.00066 * 3 2 1 5 5 H 1.48500 * 109.47375 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47256 * 120.00086 * 3 2 1 7 7 C 1.38805 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00320 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99719 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.88857 * 325.69937 * 10 9 7 12 12 C 1.55154 * 111.00420 * 89.58093 * 10 9 7 13 13 C 1.54327 * 102.94290 * 153.61252 * 12 10 9 14 14 N 1.47029 * 107.26790 * 337.80696 * 13 12 10 15 15 C 1.34773 * 125.64802 * 178.99157 * 14 13 12 16 16 O 1.21281 * 120.00184 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99892 * 359.96874 * 15 14 13 18 18 C 1.53000 * 109.47260 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47468 * 179.97438 * 18 17 15 20 20 C 1.34520 * 125.78855 * 89.71649 * 19 18 17 21 21 C 1.41385 * 106.84011 * 179.89484 * 20 19 18 22 22 C 1.34509 * 106.84107 * 0.36423 * 21 20 19 23 23 O 1.34302 * 125.79522 * 270.02602 * 19 18 17 24 24 C 1.47418 * 108.70495 * 358.93814 * 14 13 12 25 25 H 0.96994 * 120.00265 * 0.02562 * 1 2 3 26 26 H 0.96990 * 119.99909 * 0.02562 * 9 7 2 27 27 H 1.09004 * 110.72212 * 271.97275 * 12 10 9 28 28 H 1.08997 * 110.72125 * 35.07297 * 12 10 9 29 29 H 1.08993 * 109.88730 * 97.22288 * 13 12 10 30 30 H 1.08996 * 109.88624 * 218.24012 * 13 12 10 31 31 H 1.08998 * 109.47386 * 300.00642 * 17 15 14 32 32 H 1.09005 * 109.47318 * 60.00520 * 17 15 14 33 33 H 1.08998 * 109.47059 * 300.00369 * 18 17 15 34 34 H 1.09007 * 109.47426 * 59.99899 * 18 17 15 35 35 H 1.07994 * 126.57985 * 0.02580 * 20 19 18 36 36 H 1.08004 * 126.57671 * 180.12819 * 21 20 19 37 37 H 1.08000 * 125.79053 * 179.78941 * 22 21 20 38 38 H 1.08995 * 110.37279 * 265.29528 * 24 14 13 39 39 H 1.08997 * 110.36990 * 142.96726 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9812 -3.5725 -0.5744 12 6 2.3456 -4.1330 1.4479 13 6 2.4567 -5.6644 1.2925 14 7 1.7418 -6.0312 0.0612 15 6 1.6242 -7.2779 -0.4370 16 8 1.0081 -7.4646 -1.4649 17 6 2.2584 -8.4400 0.2830 18 6 1.9778 -9.7318 -0.4873 19 6 2.6125 -10.8938 0.2323 20 6 2.0296 -11.6411 1.1870 21 6 2.9766 -12.6146 1.5802 22 6 4.0842 -12.3989 0.8481 23 8 3.8579 -11.3554 0.0334 24 6 1.1738 -4.8096 -0.5374 25 1 -0.4850 0.8400 -0.0004 26 1 0.3558 -2.3881 -0.0005 27 1 3.2830 -3.7134 1.8131 28 1 1.5221 -3.8687 2.1112 29 1 3.5045 -5.9539 1.2130 30 1 1.9999 -6.1582 2.1501 31 1 3.3350 -8.2830 0.3486 32 1 1.8407 -8.5172 1.2869 33 1 0.9012 -9.8889 -0.5533 34 1 2.3958 -9.6545 -1.4911 35 1 1.0295 -11.5218 1.5766 36 1 2.8385 -13.3816 2.3279 37 1 5.0000 -12.9684 0.9054 38 1 0.1405 -4.6754 -0.2175 39 1 1.2319 -4.8576 -1.6247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018495388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:41 Heat of formation + Delta-G solvation = -11.030433 kcal Electronic energy + Delta-G solvation = -20723.234971 eV Core-core repulsion = 17439.712403 eV Total energy + Delta-G solvation = -3283.522568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.77925 -39.87232 -37.43347 -34.24316 -34.13886 -33.00036 -31.56427 -29.62745 -29.23372 -27.64498 -24.89650 -23.39080 -22.59672 -21.97331 -20.57275 -20.11854 -19.00250 -17.73068 -17.37723 -16.77984 -16.26597 -16.17541 -15.34507 -14.93067 -14.56180 -14.35506 -13.58588 -13.42468 -13.24208 -13.05446 -12.93427 -12.71189 -12.64588 -12.49276 -12.06271 -11.94020 -11.63884 -11.29529 -11.18059 -10.86000 -10.72538 -10.33398 -10.15851 -10.11130 -9.82500 -9.72903 -8.98390 -8.68059 -8.44835 -7.07932 -5.84648 -3.15550 1.48851 2.37485 2.71541 2.74043 3.16752 3.39967 3.44884 3.45715 4.34091 4.52556 4.67867 4.74409 4.80280 4.83532 4.97005 5.02354 5.24872 5.30172 5.35036 5.49480 5.55512 5.58709 5.58947 5.73321 5.73518 5.77538 5.93487 5.95802 6.12053 6.21452 6.27580 6.34840 6.51665 6.58741 6.87759 6.91984 7.62429 7.68949 8.25226 8.32864 9.44260 9.98013 10.32915 11.37451 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048604 B = 0.002710 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.951346 B =10328.778534 C =10549.409090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.612 5.612 15 C 0.526 3.474 16 O -0.547 6.547 17 C -0.132 4.132 18 C -0.025 4.025 19 C -0.006 4.006 20 C -0.212 4.212 21 C -0.214 4.214 22 C -0.046 4.046 23 O -0.176 6.176 24 C 0.098 3.902 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.068 0.932 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.811 -22.738 4.639 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.197 4.197 13 C -0.023 4.023 14 N -0.346 5.346 15 C 0.315 3.685 16 O -0.426 6.426 17 C -0.172 4.172 18 C -0.063 4.063 19 C -0.056 4.056 20 C -0.231 4.231 21 C -0.233 4.233 22 C -0.114 4.114 23 O -0.072 6.072 24 C -0.025 4.025 25 H 0.067 0.933 26 H 0.221 0.779 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.218 0.782 38 H 0.087 0.913 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.774 -22.600 3.839 23.904 hybrid contribution 0.131 0.718 0.482 0.875 sum 6.905 -21.882 4.321 23.349 Atomic orbital electron populations 1.69649 1.05162 1.26050 1.56912 1.24775 0.95538 0.97836 1.02470 0.86239 0.78525 0.83307 0.77900 1.21154 1.21638 1.21166 1.19169 0.91021 0.83787 1.43707 0.91020 1.42252 1.05832 0.99329 1.88044 1.21298 0.94520 0.85686 0.92547 0.91730 1.23426 1.02929 0.91311 1.02058 1.22111 0.96049 0.97888 0.86237 1.48471 1.53568 1.06594 1.25993 1.20133 0.80599 0.82803 0.84995 1.90708 1.43031 1.84290 1.24533 1.21625 1.02809 0.92205 1.00546 1.19868 1.00857 0.87068 0.98475 1.22511 0.83428 0.99391 1.00261 1.21640 1.01862 0.98637 1.00986 1.21843 0.94288 1.02858 1.04306 1.24025 1.01154 0.91594 0.94618 1.84035 1.30866 1.39738 1.52528 1.22571 0.97957 0.83198 0.98811 0.93269 0.77925 0.90695 0.90529 0.91833 0.91955 0.88602 0.88527 0.87932 0.89148 0.83427 0.83542 0.78217 0.91326 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 9 N -0.71 -17.20 5.26 -51.35 -0.27 -17.47 16 10 C 0.17 3.25 3.70 -65.78 -0.24 3.01 16 11 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 12 C -0.16 -2.46 6.65 -24.90 -0.17 -2.62 16 13 C 0.10 1.26 6.49 -3.06 -0.02 1.24 16 14 N -0.61 -9.11 3.33 -170.52 -0.57 -9.68 16 15 C 0.53 7.65 7.85 -10.99 -0.09 7.56 16 16 O -0.55 -9.85 16.24 5.56 0.09 -9.76 16 17 C -0.13 -1.36 4.87 -27.88 -0.14 -1.50 16 18 C -0.03 -0.26 5.04 -27.89 -0.14 -0.40 16 19 C -0.01 -0.06 6.58 -35.63 -0.23 -0.29 16 20 C -0.21 -2.01 10.81 -39.70 -0.43 -2.44 16 21 C -0.21 -1.80 10.91 -39.70 -0.43 -2.23 16 22 C -0.05 -0.38 12.09 29.41 0.36 -0.02 16 23 O -0.18 -1.87 10.65 5.72 0.06 -1.81 16 24 C 0.10 1.71 6.54 -2.53 -0.02 1.69 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.39 9.94 7.73 -40.82 -0.32 9.62 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 39 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -31.86 333.64 -7.51 -39.38 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.76 Total: 7.33 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.79 Total: -3.09 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.11 Total: -53.87 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.15 Total: -11.57 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.86 -7.51 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018495388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.346 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds