Wall clock time and date at job start Tue Mar 31 2020 00:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99554 * 2 1 4 4 H 1.48510 * 109.47220 * 240.00066 * 3 2 1 5 5 H 1.48500 * 109.47375 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47256 * 120.00086 * 3 2 1 7 7 C 1.38805 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00320 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99719 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.88857 * 325.69937 * 10 9 7 12 12 C 1.55154 * 111.00420 * 89.58093 * 10 9 7 13 13 C 1.54327 * 102.94290 * 153.61252 * 12 10 9 14 14 N 1.47029 * 107.26790 * 337.80696 * 13 12 10 15 15 C 1.34773 * 125.64802 * 178.99157 * 14 13 12 16 16 O 1.21281 * 120.00184 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99892 * 359.96874 * 15 14 13 18 18 C 1.53000 * 109.47260 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47468 * 179.97438 * 18 17 15 20 20 C 1.34520 * 125.78855 * 89.71649 * 19 18 17 21 21 C 1.41385 * 106.84011 * 179.89484 * 20 19 18 22 22 C 1.34509 * 106.84107 * 0.36423 * 21 20 19 23 23 O 1.34302 * 125.79522 * 270.02602 * 19 18 17 24 24 C 1.47418 * 108.70495 * 358.93814 * 14 13 12 25 25 H 0.96994 * 120.00265 * 0.02562 * 1 2 3 26 26 H 0.96990 * 119.99909 * 0.02562 * 9 7 2 27 27 H 1.09004 * 110.72212 * 271.97275 * 12 10 9 28 28 H 1.08997 * 110.72125 * 35.07297 * 12 10 9 29 29 H 1.08993 * 109.88730 * 97.22288 * 13 12 10 30 30 H 1.08996 * 109.88624 * 218.24012 * 13 12 10 31 31 H 1.08998 * 109.47386 * 300.00642 * 17 15 14 32 32 H 1.09005 * 109.47318 * 60.00520 * 17 15 14 33 33 H 1.08998 * 109.47059 * 300.00369 * 18 17 15 34 34 H 1.09007 * 109.47426 * 59.99899 * 18 17 15 35 35 H 1.07994 * 126.57985 * 0.02580 * 20 19 18 36 36 H 1.08004 * 126.57671 * 180.12819 * 21 20 19 37 37 H 1.08000 * 125.79053 * 179.78941 * 22 21 20 38 38 H 1.08995 * 110.37279 * 265.29528 * 24 14 13 39 39 H 1.08997 * 110.36990 * 142.96726 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9812 -3.5725 -0.5744 12 6 2.3456 -4.1330 1.4479 13 6 2.4567 -5.6644 1.2925 14 7 1.7418 -6.0312 0.0612 15 6 1.6242 -7.2779 -0.4370 16 8 1.0081 -7.4646 -1.4649 17 6 2.2584 -8.4400 0.2830 18 6 1.9778 -9.7318 -0.4873 19 6 2.6125 -10.8938 0.2323 20 6 2.0296 -11.6411 1.1870 21 6 2.9766 -12.6146 1.5802 22 6 4.0842 -12.3989 0.8481 23 8 3.8579 -11.3554 0.0334 24 6 1.1738 -4.8096 -0.5374 25 1 -0.4850 0.8400 -0.0004 26 1 0.3558 -2.3881 -0.0005 27 1 3.2830 -3.7134 1.8131 28 1 1.5221 -3.8687 2.1112 29 1 3.5045 -5.9539 1.2130 30 1 1.9999 -6.1582 2.1501 31 1 3.3350 -8.2830 0.3486 32 1 1.8407 -8.5172 1.2869 33 1 0.9012 -9.8889 -0.5533 34 1 2.3958 -9.6545 -1.4911 35 1 1.0295 -11.5218 1.5766 36 1 2.8385 -13.3816 2.3279 37 1 5.0000 -12.9684 0.9054 38 1 0.1405 -4.6754 -0.2175 39 1 1.2319 -4.8576 -1.6247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018495388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:40 Heat of formation + Delta-G solvation = -31.267020 kcal Electronic energy + Delta-G solvation = -20724.112495 eV Core-core repulsion = 17439.712403 eV Total energy + Delta-G solvation = -3284.400092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.44883 -41.09256 -38.78266 -35.93271 -35.07312 -33.70130 -33.28506 -31.08753 -30.19502 -28.95948 -26.15107 -25.03014 -23.75978 -22.62414 -21.64908 -21.24159 -20.14667 -19.30530 -18.56226 -17.74022 -17.50641 -17.00537 -16.55767 -16.35917 -15.79693 -15.57068 -15.10698 -14.79474 -14.52022 -14.18330 -13.83806 -13.69220 -13.49326 -13.43869 -13.20302 -13.11538 -13.00636 -12.96103 -12.62691 -12.36590 -12.17156 -12.05821 -11.76224 -11.60238 -10.99895 -10.93471 -10.80059 -9.68250 -9.34887 -9.05326 -7.95237 -5.25629 0.81575 1.49279 1.52089 1.57803 1.58331 1.71981 1.91375 2.20576 2.57382 3.34204 3.46667 3.71916 3.85802 3.90109 3.98179 4.07383 4.18594 4.19733 4.26931 4.33033 4.37794 4.51665 4.53828 4.72993 4.75013 4.85969 4.96383 5.00376 5.01156 5.10679 5.21059 5.25903 5.28803 5.42639 5.53553 5.66023 6.25395 6.26023 6.53243 7.09287 7.32101 8.03708 8.27638 9.27888 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048604 B = 0.002710 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.951346 B =10328.778534 C =10549.409090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.730 5.730 10 C 0.164 3.836 11 H 0.062 0.938 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.614 5.614 15 C 0.523 3.477 16 O -0.589 6.589 17 C -0.117 4.117 18 C -0.020 4.020 19 C -0.026 4.026 20 C -0.216 4.216 21 C -0.227 4.227 22 C -0.045 4.045 23 O -0.194 6.194 24 C 0.107 3.893 25 H 0.251 0.749 26 H 0.374 0.626 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.235 0.765 38 H 0.057 0.943 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 -24.482 6.252 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.054 3.946 11 H 0.080 0.920 12 C -0.186 4.186 13 C -0.015 4.015 14 N -0.347 5.347 15 C 0.314 3.686 16 O -0.470 6.470 17 C -0.157 4.157 18 C -0.058 4.058 19 C -0.075 4.075 20 C -0.235 4.235 21 C -0.246 4.246 22 C -0.111 4.111 23 O -0.091 6.091 24 C -0.018 4.018 25 H 0.060 0.940 26 H 0.206 0.794 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.251 0.749 38 H 0.075 0.925 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.901 -24.395 5.480 26.540 hybrid contribution -0.481 1.124 -0.037 1.223 sum 8.420 -23.271 5.443 25.339 Atomic orbital electron populations 1.69812 1.06705 1.26237 1.59238 1.25587 0.96345 1.01204 1.03544 0.85201 0.77151 0.79054 0.78264 1.20531 1.22482 1.20007 1.19574 0.91567 0.84760 1.41411 0.90127 1.42410 1.05443 1.00588 1.88453 1.21461 0.93974 0.84194 0.94952 0.92019 1.23216 1.02826 0.93817 0.98782 1.22232 0.97873 0.95398 0.86033 1.48547 1.53626 1.05915 1.26604 1.20926 0.79831 0.83305 0.84542 1.90693 1.44896 1.84843 1.26558 1.21606 1.03408 0.89859 1.00809 1.19741 1.00677 0.87445 0.97895 1.22439 0.83837 1.00070 1.01174 1.21931 1.02515 0.98538 1.00537 1.22182 0.94125 1.03256 1.05016 1.24782 1.02344 0.90662 0.93362 1.84023 1.31036 1.40675 1.53382 1.22228 0.97301 0.84365 0.97881 0.93990 0.79394 0.89701 0.91864 0.88815 0.89003 0.86851 0.86145 0.88257 0.90513 0.82384 0.81524 0.74906 0.92508 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.63 13.06 21.65 0.28 -58.34 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.24 -12.94 9.97 84.03 0.84 -12.11 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.73 -35.69 5.26 -316.36 -1.66 -37.36 16 10 C 0.16 6.18 3.70 46.38 0.17 6.35 16 11 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 12 C -0.15 -4.31 6.65 31.78 0.21 -4.10 16 13 C 0.11 2.32 6.49 86.73 0.56 2.88 16 14 N -0.61 -17.30 3.33 -811.80 -2.70 -20.00 16 15 C 0.52 14.53 7.85 87.66 0.69 15.22 16 16 O -0.59 -21.34 16.24 -3.03 -0.05 -21.39 16 17 C -0.12 -2.13 4.87 29.85 0.15 -1.98 16 18 C -0.02 -0.39 5.04 29.85 0.15 -0.24 16 19 C -0.03 -0.48 6.58 24.83 0.16 -0.32 16 20 C -0.22 -3.64 10.81 22.19 0.24 -3.40 16 21 C -0.23 -3.22 10.91 22.19 0.24 -2.97 16 22 C -0.04 -0.61 12.09 66.97 0.81 0.20 16 23 O -0.19 -3.76 10.65 -2.46 -0.03 -3.79 16 24 C 0.11 3.77 6.54 86.86 0.57 4.34 16 25 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 26 H 0.37 19.90 7.73 -92.72 -0.72 19.19 16 27 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.12 1.66 8.14 -2.38 -0.02 1.65 16 33 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 34 H 0.08 1.67 8.10 -2.38 -0.02 1.65 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.23 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.06 2.13 8.00 -2.39 -0.02 2.11 16 39 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 Total: -1.00 -70.30 333.64 3.45 -66.85 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.33 Total: 26.73 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.26 Total: 0.16 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.08 Total: -115.70 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.08 Total: -25.18 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.30 3.45 -66.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018495388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.584 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds