Wall clock time and date at job start Tue Mar 31 2020 00:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86810 * 119.99906 * 2 1 4 4 H 1.48500 * 109.46948 * 239.99830 * 3 2 1 5 5 H 1.48499 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46975 * 119.99725 * 3 2 1 7 7 C 1.38808 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00288 * 167.70845 * 7 2 1 9 9 N 1.36936 * 119.99835 * 347.43927 * 7 2 1 10 10 C 1.46927 * 120.63173 * 328.50756 * 9 7 2 11 11 C 1.53190 * 108.77525 * 233.58893 * 10 9 7 12 12 C 1.53033 * 109.31381 * 305.36337 * 11 10 9 13 13 C 1.53041 * 109.53883 * 61.36530 * 12 11 10 14 14 C 1.46923 * 120.63151 * 148.23161 * 9 7 2 15 15 H 1.09008 * 109.58540 * 246.19905 * 14 9 7 16 16 C 1.52998 * 109.58825 * 6.62227 * 14 9 7 17 17 N 1.46503 * 109.47109 * 299.77478 * 16 14 9 18 18 C 1.34781 * 120.00262 * 179.97438 * 17 16 14 19 19 O 1.21694 * 119.99410 * 359.97438 * 18 17 16 20 20 C 1.46654 * 120.00173 * 179.97438 * 18 17 16 21 21 C 1.36541 * 125.98807 * 179.71542 * 20 18 17 22 22 C 1.40362 * 106.70794 * 179.85339 * 21 20 18 23 23 C 1.35131 * 107.11637 * 0.41027 * 22 21 20 24 24 O 1.33930 * 108.76421 * 359.74653 * 23 22 21 25 25 H 0.97001 * 119.99502 * 0.02562 * 1 2 3 26 26 H 1.09011 * 109.58334 * 353.37144 * 10 9 7 27 27 H 1.08997 * 109.58775 * 113.65582 * 10 9 7 28 28 H 1.09001 * 109.49832 * 65.31329 * 11 10 9 29 29 H 1.09004 * 109.49456 * 185.37543 * 11 10 9 30 30 H 1.09004 * 109.46283 * 181.38639 * 12 11 10 31 31 H 1.09005 * 109.45870 * 301.35817 * 12 11 10 32 32 H 1.08997 * 109.49621 * 58.58977 * 13 12 11 33 33 H 1.08998 * 109.49800 * 178.65390 * 13 12 11 34 34 H 1.09002 * 109.47235 * 59.76891 * 16 14 9 35 35 H 1.09005 * 109.47478 * 179.77565 * 16 14 9 36 36 H 0.97000 * 120.00223 * 359.97438 * 17 16 14 37 37 H 1.08004 * 126.64416 * 359.96064 * 21 20 18 38 38 H 1.08007 * 126.44066 * 180.15381 * 22 21 20 39 39 H 1.08001 * 125.61567 * 179.78185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0718 -1.2129 -0.1986 9 7 1.3502 -2.3737 0.2590 10 6 0.1913 -2.3966 1.1618 11 6 0.4314 -3.4522 2.2456 12 6 0.7386 -4.7971 1.5831 13 6 2.0094 -4.6735 0.7393 14 6 1.7837 -3.6307 -0.3660 15 1 1.0132 -3.9824 -1.0522 16 6 3.0888 -3.4001 -1.1304 17 7 2.8732 -2.3927 -2.1720 18 6 3.8909 -2.0260 -2.9760 19 8 4.9891 -2.5315 -2.8364 20 6 3.6750 -1.0179 -4.0190 21 6 4.6154 -0.5539 -4.8934 22 6 3.9753 0.3910 -5.7105 23 6 2.6908 0.4682 -5.2982 24 8 2.5137 -0.3823 -4.2788 25 1 -0.4849 0.8401 -0.0004 26 1 0.0702 -1.4176 1.6257 27 1 -0.7068 -2.6471 0.5973 28 1 1.2755 -3.1512 2.8661 29 1 -0.4603 -3.5466 2.8654 30 1 0.8857 -5.5556 2.3520 31 1 -0.0954 -5.0856 0.9432 32 1 2.8386 -4.3610 1.3739 33 1 2.2409 -5.6378 0.2869 34 1 3.8571 -3.0508 -0.4406 35 1 3.4108 -4.3346 -1.5900 36 1 1.9980 -1.9895 -2.2831 37 1 5.6507 -0.8567 -4.9472 38 1 4.4260 0.9540 -6.5146 39 1 1.9318 1.1095 -5.7214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024303565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:04 Heat of formation + Delta-G solvation = -2.295290 kcal Electronic energy + Delta-G solvation = -22553.625107 eV Core-core repulsion = 19270.481323 eV Total energy + Delta-G solvation = -3283.143784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.37142 -39.06239 -37.63904 -34.29221 -33.07715 -32.78064 -30.99046 -29.93563 -29.43739 -26.09986 -24.88252 -22.60796 -22.10192 -21.48999 -20.64624 -19.82096 -19.13851 -18.10217 -16.49523 -16.06430 -15.83064 -15.49543 -15.28387 -14.24379 -14.04638 -13.71874 -13.57271 -13.37812 -12.92306 -12.79438 -12.74032 -12.44959 -12.42054 -12.02469 -11.77050 -11.22134 -10.93668 -10.77366 -10.56827 -10.31168 -10.15401 -9.99959 -9.83930 -9.83621 -9.50586 -9.35780 -8.66841 -8.49572 -8.19058 -6.65207 -5.84608 -3.32070 1.41201 2.57610 3.04781 3.35180 3.39336 3.43678 3.64962 3.84630 4.43621 4.99186 5.10113 5.21929 5.30868 5.33014 5.50237 5.63944 5.67656 5.85222 5.93571 5.96260 6.02974 6.11215 6.13953 6.28615 6.35681 6.39931 6.52432 6.58721 6.70625 6.73060 6.84841 6.94493 7.02797 7.16962 7.38205 7.65627 7.77962 8.16928 8.40660 8.69008 9.16051 9.76994 10.35279 11.21997 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.007188 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.746158 B = 3894.182552 C = 4994.419708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.013 3.987 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.159 3.841 15 H 0.033 0.967 16 C 0.133 3.867 17 N -0.678 5.678 18 C 0.591 3.409 19 O -0.546 6.546 20 C -0.058 4.058 21 C -0.139 4.139 22 C -0.230 4.230 23 C -0.014 4.014 24 O -0.152 6.152 25 H 0.254 0.746 26 H 0.085 0.915 27 H 0.018 0.982 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.421 0.579 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 -3.328 -6.089 7.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.052 3.948 15 H 0.051 0.949 16 C 0.009 3.991 17 N -0.327 5.327 18 C 0.376 3.624 19 O -0.428 6.428 20 C -0.111 4.111 21 C -0.160 4.160 22 C -0.249 4.249 23 C -0.085 4.085 24 O -0.046 6.046 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.259 0.741 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.391 -3.608 -5.787 7.227 hybrid contribution 0.112 1.389 -0.147 1.402 sum 2.503 -2.219 -5.934 6.812 Atomic orbital electron populations 1.69983 1.05125 1.25608 1.53458 1.25065 0.95194 0.98076 1.00348 0.86523 0.79104 0.83778 0.78420 1.20709 1.21575 1.20976 1.19117 0.91526 0.83866 1.43876 0.91468 1.44064 1.34673 1.02495 1.49993 1.20765 0.88241 0.97312 0.88890 1.22193 0.99895 0.96654 0.99581 1.21360 0.97486 0.97383 0.98259 1.22007 0.98155 0.98121 0.98355 1.20835 0.93021 0.88732 0.92206 0.94928 1.21376 0.98663 0.89935 0.89100 1.45983 1.13891 1.41032 1.31840 1.16576 0.84955 0.80646 0.80214 1.90807 1.24283 1.55926 1.71752 1.22325 0.84912 1.01469 1.02388 1.21867 1.00506 0.98036 0.95572 1.21766 0.94580 1.03997 1.04580 1.24353 0.98824 0.95500 0.89784 1.84177 1.34201 1.43380 1.42817 0.93546 0.89693 0.96366 0.92840 0.93556 0.93717 0.92882 0.92025 0.93022 0.91197 0.92237 0.74070 0.82614 0.83040 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 11.18 55.49 0.62 -23.85 16 2 C 0.01 0.34 5.00 -17.43 -0.09 0.25 16 3 Si 0.89 21.50 29.57 -169.99 -5.03 16.47 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.42 6.94 -15.06 -0.10 -6.52 16 8 H 0.07 1.75 5.90 -52.48 -0.31 1.44 16 9 N -0.59 -13.48 2.97 -164.52 -0.49 -13.97 16 10 C 0.17 3.91 5.25 -3.71 -0.02 3.89 16 11 C -0.14 -2.66 6.08 -26.62 -0.16 -2.83 16 12 C -0.11 -1.75 5.88 -26.69 -0.16 -1.90 16 13 C -0.13 -2.11 5.40 -26.39 -0.14 -2.25 16 14 C 0.16 3.08 3.03 -67.38 -0.20 2.88 16 15 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 16 C 0.13 2.54 4.44 -4.04 -0.02 2.52 16 17 N -0.68 -13.68 3.85 -61.62 -0.24 -13.92 16 18 C 0.59 12.05 7.79 -12.86 -0.10 11.95 16 19 O -0.55 -12.04 16.86 5.19 0.09 -11.95 16 20 C -0.06 -1.08 7.13 -36.80 -0.26 -1.35 16 21 C -0.14 -2.23 10.62 -39.40 -0.42 -2.65 16 22 C -0.23 -3.06 10.87 -39.89 -0.43 -3.49 16 23 C -0.01 -0.19 12.08 29.63 0.36 0.16 16 24 O -0.15 -2.72 10.40 5.00 0.05 -2.66 16 25 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.08 2.17 6.18 -51.92 -0.32 1.85 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.44 7.42 -51.93 -0.39 1.05 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.42 9.00 7.15 -40.82 -0.29 8.71 16 37 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 38 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -29.14 319.07 -7.45 -36.59 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.52 Total: 7.83 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.75 Total: 0.65 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.11 Total: -51.74 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.14 Total: -14.61 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.14 -7.45 -36.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024303565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.299 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds