Wall clock time and date at job start Tue Mar 31 2020 00:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86810 * 119.99906 * 2 1 4 4 H 1.48500 * 109.46948 * 239.99830 * 3 2 1 5 5 H 1.48499 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46975 * 119.99725 * 3 2 1 7 7 C 1.38808 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00288 * 167.70845 * 7 2 1 9 9 N 1.36936 * 119.99835 * 347.43927 * 7 2 1 10 10 C 1.46927 * 120.63173 * 328.50756 * 9 7 2 11 11 C 1.53190 * 108.77525 * 233.58893 * 10 9 7 12 12 C 1.53033 * 109.31381 * 305.36337 * 11 10 9 13 13 C 1.53041 * 109.53883 * 61.36530 * 12 11 10 14 14 C 1.46923 * 120.63151 * 148.23161 * 9 7 2 15 15 H 1.09008 * 109.58540 * 246.19905 * 14 9 7 16 16 C 1.52998 * 109.58825 * 6.62227 * 14 9 7 17 17 N 1.46503 * 109.47109 * 299.77478 * 16 14 9 18 18 C 1.34781 * 120.00262 * 179.97438 * 17 16 14 19 19 O 1.21694 * 119.99410 * 359.97438 * 18 17 16 20 20 C 1.46654 * 120.00173 * 179.97438 * 18 17 16 21 21 C 1.36541 * 125.98807 * 179.71542 * 20 18 17 22 22 C 1.40362 * 106.70794 * 179.85339 * 21 20 18 23 23 C 1.35131 * 107.11637 * 0.41027 * 22 21 20 24 24 O 1.33930 * 108.76421 * 359.74653 * 23 22 21 25 25 H 0.97001 * 119.99502 * 0.02562 * 1 2 3 26 26 H 1.09011 * 109.58334 * 353.37144 * 10 9 7 27 27 H 1.08997 * 109.58775 * 113.65582 * 10 9 7 28 28 H 1.09001 * 109.49832 * 65.31329 * 11 10 9 29 29 H 1.09004 * 109.49456 * 185.37543 * 11 10 9 30 30 H 1.09004 * 109.46283 * 181.38639 * 12 11 10 31 31 H 1.09005 * 109.45870 * 301.35817 * 12 11 10 32 32 H 1.08997 * 109.49621 * 58.58977 * 13 12 11 33 33 H 1.08998 * 109.49800 * 178.65390 * 13 12 11 34 34 H 1.09002 * 109.47235 * 59.76891 * 16 14 9 35 35 H 1.09005 * 109.47478 * 179.77565 * 16 14 9 36 36 H 0.97000 * 120.00223 * 359.97438 * 17 16 14 37 37 H 1.08004 * 126.64416 * 359.96064 * 21 20 18 38 38 H 1.08007 * 126.44066 * 180.15381 * 22 21 20 39 39 H 1.08001 * 125.61567 * 179.78185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0718 -1.2129 -0.1986 9 7 1.3502 -2.3737 0.2590 10 6 0.1913 -2.3966 1.1618 11 6 0.4314 -3.4522 2.2456 12 6 0.7386 -4.7971 1.5831 13 6 2.0094 -4.6735 0.7393 14 6 1.7837 -3.6307 -0.3660 15 1 1.0132 -3.9824 -1.0522 16 6 3.0888 -3.4001 -1.1304 17 7 2.8732 -2.3927 -2.1720 18 6 3.8909 -2.0260 -2.9760 19 8 4.9891 -2.5315 -2.8364 20 6 3.6750 -1.0179 -4.0190 21 6 4.6154 -0.5539 -4.8934 22 6 3.9753 0.3910 -5.7105 23 6 2.6908 0.4682 -5.2982 24 8 2.5137 -0.3823 -4.2788 25 1 -0.4849 0.8401 -0.0004 26 1 0.0702 -1.4176 1.6257 27 1 -0.7068 -2.6471 0.5973 28 1 1.2755 -3.1512 2.8661 29 1 -0.4603 -3.5466 2.8654 30 1 0.8857 -5.5556 2.3520 31 1 -0.0954 -5.0856 0.9432 32 1 2.8386 -4.3610 1.3739 33 1 2.2409 -5.6378 0.2869 34 1 3.8571 -3.0508 -0.4406 35 1 3.4108 -4.3346 -1.5900 36 1 1.9980 -1.9895 -2.2831 37 1 5.6507 -0.8567 -4.9472 38 1 4.4260 0.9540 -6.5146 39 1 1.9318 1.1095 -5.7214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024303565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:03 Heat of formation + Delta-G solvation = -20.139245 kcal Electronic energy + Delta-G solvation = -22554.398878 eV Core-core repulsion = 19270.481323 eV Total energy + Delta-G solvation = -3283.917556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.60187 -40.64446 -39.25149 -35.84562 -34.90361 -34.01105 -32.55355 -31.70710 -30.73529 -27.73882 -26.59450 -24.07838 -23.69190 -22.68704 -22.19203 -21.25551 -20.69880 -19.54248 -18.22841 -17.52426 -17.21035 -17.10911 -16.78631 -16.06193 -15.71655 -15.24641 -15.12641 -14.83176 -14.56522 -14.12150 -14.05183 -13.90270 -13.63070 -13.53145 -13.43957 -12.86865 -12.81794 -12.57673 -12.35935 -12.05453 -11.81501 -11.52917 -11.44704 -11.10315 -11.01867 -10.99204 -10.53432 -10.07236 -9.57386 -8.55003 -7.84152 -5.31744 0.09146 1.39167 1.41667 1.45390 1.46867 1.80704 2.17606 2.39864 2.48566 3.31441 3.57487 3.81713 3.97769 3.99214 4.11617 4.22860 4.26862 4.42323 4.54377 4.62632 4.65333 4.72322 4.86378 4.90406 4.96816 5.00197 5.14076 5.23130 5.29035 5.34296 5.43178 5.47066 5.51335 5.63589 5.73632 5.84849 5.92678 6.43860 6.57783 7.09931 7.19471 7.87828 8.40994 9.19782 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.007188 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.746158 B = 3894.182552 C = 4994.419708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.029 4.029 3 Si 0.936 3.064 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.057 0.943 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.120 4.120 14 C 0.158 3.842 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.683 5.683 18 C 0.588 3.412 19 O -0.573 6.573 20 C -0.107 4.107 21 C -0.130 4.130 22 C -0.226 4.226 23 C -0.007 4.007 24 O -0.178 6.178 25 H 0.249 0.751 26 H 0.050 0.950 27 H 0.001 0.999 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.413 0.587 37 H 0.165 0.835 38 H 0.191 0.809 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -3.908 -6.970 8.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.226 4.226 3 Si 0.766 3.234 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.369 4.369 8 H 0.075 0.925 9 N -0.326 5.326 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.160 4.160 14 C 0.052 3.948 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.330 5.330 18 C 0.375 3.625 19 O -0.456 6.456 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.244 4.244 23 C -0.076 4.076 24 O -0.073 6.073 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.250 0.750 37 H 0.183 0.817 38 H 0.209 0.791 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.770 -4.213 -6.661 8.354 hybrid contribution 0.014 1.589 0.030 1.589 sum 2.784 -2.625 -6.631 7.656 Atomic orbital electron populations 1.70090 1.05865 1.25407 1.55427 1.25484 0.95667 0.99937 1.01475 0.85827 0.77990 0.81804 0.77739 1.21242 1.21600 1.21384 1.19113 0.91069 0.84857 1.41867 0.92523 1.44247 1.34506 1.03126 1.50688 1.20591 0.87592 0.96970 0.89610 1.22046 1.00457 0.96632 0.98260 1.21346 0.97257 0.96500 0.98896 1.21957 0.98263 0.98447 0.97321 1.21013 0.92832 0.87882 0.93118 0.94944 1.21397 0.97994 0.90554 0.88755 1.46017 1.13530 1.41318 1.32174 1.16850 0.84467 0.80735 0.80410 1.90765 1.24931 1.57158 1.72775 1.22113 0.86279 1.03455 1.04027 1.22235 1.00591 0.97528 0.94713 1.22202 0.94145 1.03242 1.04852 1.25377 1.00324 0.94032 0.87896 1.84151 1.34266 1.44447 1.44467 0.94202 0.93201 0.98126 0.93602 0.91725 0.90618 0.92444 0.92646 0.89794 0.93047 0.90085 0.74959 0.81748 0.79139 0.73623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.64 11.18 21.65 0.24 -51.40 16 2 C -0.03 -1.55 5.00 84.86 0.42 -1.12 16 3 Si 0.94 45.07 29.57 68.60 2.03 47.10 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -12.30 6.94 84.03 0.58 -11.71 16 8 H 0.06 3.04 5.90 -2.91 -0.02 3.02 16 9 N -0.60 -27.85 2.97 -674.42 -2.00 -29.85 16 10 C 0.18 8.12 5.25 86.36 0.45 8.57 16 11 C -0.13 -4.81 6.08 30.67 0.19 -4.62 16 12 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.12 -3.73 5.40 30.82 0.17 -3.56 16 14 C 0.16 6.00 3.03 45.12 0.14 6.13 16 15 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 16 C 0.14 5.20 4.44 86.38 0.38 5.58 16 17 N -0.68 -28.12 3.85 -467.09 -1.80 -29.92 16 18 C 0.59 24.48 7.79 86.44 0.67 25.16 16 19 O -0.57 -25.67 16.86 -4.33 -0.07 -25.74 16 20 C -0.11 -3.99 7.13 24.07 0.17 -3.82 16 21 C -0.13 -4.00 10.62 22.39 0.24 -3.76 16 22 C -0.23 -5.32 10.87 22.07 0.24 -5.08 16 23 C -0.01 -0.17 12.08 67.10 0.81 0.64 16 24 O -0.18 -6.30 10.40 -5.03 -0.05 -6.36 16 25 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 26 H 0.05 2.62 6.18 -2.38 -0.01 2.60 16 27 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 2.14 7.42 -2.39 -0.02 2.13 16 35 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 36 H 0.41 18.24 7.15 -92.71 -0.66 17.58 16 37 H 0.16 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.25 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -65.02 319.07 3.38 -61.64 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.39 Total: 24.99 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 4.65 Total: 9.54 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -3.56 Total: -111.17 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.13 Total: -32.10 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.02 3.38 -61.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024303565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.497 kcal (2) G-P(sol) polarization free energy of solvation -65.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds