Wall clock time and date at job start Tue Mar 31 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00169 * 2 1 4 4 H 1.48505 * 109.47184 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47101 * 119.99946 * 3 2 1 6 6 H 1.48499 * 109.47348 * 240.00163 * 3 2 1 7 7 C 1.38807 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99747 * 193.93727 * 7 2 1 9 9 N 1.36931 * 120.00511 * 13.93413 * 7 2 1 10 10 C 1.46933 * 120.62763 * 31.13144 * 9 7 2 11 11 C 1.53191 * 108.77334 * 126.36772 * 10 9 7 12 12 C 1.53040 * 109.31458 * 54.63701 * 11 10 9 13 13 C 1.53040 * 109.53275 * 298.62813 * 12 11 10 14 14 C 1.46926 * 120.63258 * 210.84418 * 9 7 2 15 15 H 1.09006 * 109.58282 * 113.84869 * 14 9 7 16 16 C 1.52996 * 109.58804 * 353.42409 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.20972 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21604 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.47379 * 119.99567 * 180.02562 * 18 17 16 21 21 C 1.47024 * 127.18676 * 180.02562 * 20 18 17 22 22 C 1.34185 * 105.95191 * 179.97438 * 21 20 18 23 23 O 1.34218 * 109.12158 * 359.97438 * 22 21 20 24 24 C 1.33651 * 110.90954 * 359.76704 * 23 22 21 25 25 H 0.97003 * 120.00006 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58145 * 246.15559 * 10 9 7 27 27 H 1.08996 * 109.58730 * 6.43397 * 10 9 7 28 28 H 1.09005 * 109.49034 * 174.58349 * 11 10 9 29 29 H 1.08993 * 109.49888 * 294.67748 * 11 10 9 30 30 H 1.08996 * 109.46001 * 58.65049 * 12 11 10 31 31 H 1.08997 * 109.45556 * 178.62522 * 12 11 10 32 32 H 1.09006 * 109.49066 * 181.32075 * 13 12 11 33 33 H 1.08997 * 109.50187 * 301.38379 * 13 12 11 34 34 H 1.08998 * 109.46969 * 180.21518 * 16 14 9 35 35 H 1.08997 * 109.47304 * 300.21145 * 16 14 9 36 36 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 37 37 H 1.07997 * 127.02852 * 359.97438 * 21 20 18 38 38 H 1.07995 * 125.43684 * 179.97438 * 22 21 20 39 39 H 1.08000 * 125.80038 * 180.26343 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0664 -1.2160 0.2248 9 7 1.3558 -2.3705 -0.2866 10 6 0.2109 -2.3810 -1.2075 11 6 0.4695 -3.4192 -2.3038 12 6 0.7689 -4.7739 -1.6577 13 6 2.0264 -4.6614 -0.7927 14 6 1.7890 -3.6382 0.3165 15 1 1.0144 -4.0061 0.9895 16 6 3.0873 -3.4184 1.0954 17 7 2.8603 -2.4325 2.1549 18 6 3.8703 -2.0793 2.9745 19 8 4.9702 -2.5786 2.8341 20 6 3.6417 -1.0878 4.0407 21 6 4.6223 -0.5900 5.0164 22 6 3.9643 0.2933 5.7828 23 8 2.6914 0.3752 5.3652 24 6 2.4777 -0.4354 4.3243 25 1 -0.4850 0.8401 0.0004 26 1 -0.6949 -2.6442 -0.6612 27 1 0.0934 -1.3945 -1.6558 28 1 -0.4127 -3.5058 -2.9382 29 1 1.3224 -3.1071 -2.9065 30 1 -0.0743 -5.0737 -1.0355 31 1 0.9293 -5.5198 -2.4360 32 1 2.2524 -5.6323 -0.3515 33 1 2.8648 -4.3382 -1.4097 34 1 3.4090 -4.3608 1.5388 35 1 3.8597 -3.0531 0.4187 36 1 1.9828 -2.0345 2.2671 37 1 5.6603 -0.8766 5.0995 38 1 4.3909 0.8495 6.6044 39 1 1.5420 -0.5554 3.7987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024331782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:56 Heat of formation + Delta-G solvation = -4.036730 kcal Electronic energy + Delta-G solvation = -22488.752052 eV Core-core repulsion = 19205.532754 eV Total energy + Delta-G solvation = -3283.219298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.25539 -39.00980 -37.62514 -34.14780 -33.09991 -32.58766 -30.89891 -29.96314 -29.37508 -26.08927 -24.91480 -22.79697 -22.14204 -21.22492 -20.67373 -19.57616 -19.09093 -18.06042 -16.48990 -15.91516 -15.66626 -15.53670 -15.11097 -14.42473 -14.23994 -14.01121 -13.61945 -13.43474 -13.00743 -12.80842 -12.69192 -12.43405 -12.14816 -12.02269 -11.75092 -11.21707 -10.96706 -10.79611 -10.56855 -10.31504 -10.16647 -10.01923 -9.61361 -9.54809 -9.49048 -9.30791 -8.63511 -8.56900 -8.19399 -6.69649 -5.88134 -3.34443 1.71456 2.31096 3.17205 3.32845 3.38302 3.43064 3.80436 3.96480 4.40655 4.89038 5.02035 5.20575 5.29049 5.41369 5.49079 5.61668 5.66902 5.79342 5.87791 5.95539 6.05251 6.14233 6.20291 6.32002 6.34923 6.40342 6.50829 6.58345 6.69069 6.71548 6.83806 6.96303 7.16229 7.18953 7.35494 7.62165 7.76082 8.27411 8.37074 8.87871 9.12861 9.74119 10.32291 11.18378 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.007045 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.713190 B = 3973.579213 C = 5077.174777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.889 3.111 4 H -0.290 1.290 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.136 3.864 17 N -0.690 5.690 18 C 0.579 3.421 19 O -0.563 6.563 20 C -0.230 4.230 21 C -0.166 4.166 22 C -0.053 4.053 23 O -0.178 6.178 24 C 0.029 3.971 25 H 0.255 0.745 26 H 0.018 0.982 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.155 0.845 38 H 0.204 0.796 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -3.619 5.826 7.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.719 3.281 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.340 5.340 18 C 0.366 3.634 19 O -0.444 6.444 20 C -0.234 4.234 21 C -0.186 4.186 22 C -0.119 4.119 23 O -0.074 6.074 24 C -0.042 4.042 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.250 0.750 37 H 0.173 0.827 38 H 0.221 0.779 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.152 -3.641 5.855 7.223 hybrid contribution 0.188 1.084 -0.223 1.123 sum 2.340 -2.557 5.632 6.613 Atomic orbital electron populations 1.69999 1.05070 1.25638 1.53637 1.25038 0.95165 0.98000 1.00782 0.86563 0.79143 0.83791 0.78604 1.21593 1.20604 1.20998 1.19184 0.92046 0.84039 1.42875 0.91266 1.44061 1.35718 1.01936 1.49496 1.20762 0.88460 0.97489 0.88518 1.22194 0.99963 0.96591 0.99616 1.21358 0.97547 0.97370 0.98202 1.21869 0.98243 0.98265 0.98370 1.20648 0.93191 0.88527 0.92299 0.95044 1.21298 0.98329 0.90453 0.88749 1.45856 1.13752 1.43125 1.31251 1.17226 0.84496 0.80935 0.80724 1.90704 1.24256 1.56311 1.73128 1.21622 0.94689 1.04980 1.02154 1.22745 1.00521 0.99290 0.96052 1.23835 0.81855 1.03457 1.02789 1.83778 1.29788 1.53420 1.40366 1.24680 1.00272 0.90832 0.88388 0.93526 0.96348 0.89748 0.93542 0.92843 0.92868 0.93712 0.92969 0.92079 0.92558 0.91516 0.75005 0.82690 0.77931 0.76790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.64 11.23 55.49 0.62 -23.02 16 2 C 0.01 0.24 4.97 -17.43 -0.09 0.15 16 3 Si 0.89 20.93 29.58 -169.99 -5.03 15.90 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.16 6.98 -15.06 -0.11 -6.27 16 8 H 0.07 1.77 5.85 -52.48 -0.31 1.46 16 9 N -0.59 -13.12 2.98 -165.03 -0.49 -13.62 16 10 C 0.17 3.82 5.27 -3.71 -0.02 3.80 16 11 C -0.14 -2.63 6.08 -26.61 -0.16 -2.80 16 12 C -0.11 -1.73 5.89 -26.69 -0.16 -1.88 16 13 C -0.13 -2.12 5.34 -26.83 -0.14 -2.26 16 14 C 0.16 3.04 2.99 -67.82 -0.20 2.84 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.57 4.42 -4.04 -0.02 2.55 16 17 N -0.69 -13.36 3.83 -61.40 -0.24 -13.60 16 18 C 0.58 11.69 7.81 -12.54 -0.10 11.59 16 19 O -0.56 -12.84 16.98 5.27 0.09 -12.75 16 20 C -0.23 -4.09 6.31 -103.28 -0.65 -4.74 16 21 C -0.17 -2.54 11.01 -37.45 -0.41 -2.96 16 22 C -0.05 -0.68 12.03 29.30 0.35 -0.33 16 23 O -0.18 -2.63 10.52 7.65 0.08 -2.55 16 24 C 0.03 0.45 11.61 30.07 0.35 0.80 16 25 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 2.11 6.19 -51.93 -0.32 1.79 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.39 7.42 -51.93 -0.39 1.01 16 36 H 0.41 8.03 6.36 -40.82 -0.26 7.77 16 37 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.22 3.11 7.47 -52.49 -0.39 2.72 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -29.23 318.16 -6.97 -36.20 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.45 Total: 8.14 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.36 Total: 0.50 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.10 Total: -50.23 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.17 Total: -15.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.23 -6.97 -36.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024331782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.163 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds