Wall clock time and date at job start Tue Mar 31 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00169 * 2 1 4 4 H 1.48505 * 109.47184 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47101 * 119.99946 * 3 2 1 6 6 H 1.48499 * 109.47348 * 240.00163 * 3 2 1 7 7 C 1.38807 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99747 * 193.93727 * 7 2 1 9 9 N 1.36931 * 120.00511 * 13.93413 * 7 2 1 10 10 C 1.46933 * 120.62763 * 31.13144 * 9 7 2 11 11 C 1.53191 * 108.77334 * 126.36772 * 10 9 7 12 12 C 1.53040 * 109.31458 * 54.63701 * 11 10 9 13 13 C 1.53040 * 109.53275 * 298.62813 * 12 11 10 14 14 C 1.46926 * 120.63258 * 210.84418 * 9 7 2 15 15 H 1.09006 * 109.58282 * 113.84869 * 14 9 7 16 16 C 1.52996 * 109.58804 * 353.42409 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.20972 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21604 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.47379 * 119.99567 * 180.02562 * 18 17 16 21 21 C 1.47024 * 127.18676 * 180.02562 * 20 18 17 22 22 C 1.34185 * 105.95191 * 179.97438 * 21 20 18 23 23 O 1.34218 * 109.12158 * 359.97438 * 22 21 20 24 24 C 1.33651 * 110.90954 * 359.76704 * 23 22 21 25 25 H 0.97003 * 120.00006 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58145 * 246.15559 * 10 9 7 27 27 H 1.08996 * 109.58730 * 6.43397 * 10 9 7 28 28 H 1.09005 * 109.49034 * 174.58349 * 11 10 9 29 29 H 1.08993 * 109.49888 * 294.67748 * 11 10 9 30 30 H 1.08996 * 109.46001 * 58.65049 * 12 11 10 31 31 H 1.08997 * 109.45556 * 178.62522 * 12 11 10 32 32 H 1.09006 * 109.49066 * 181.32075 * 13 12 11 33 33 H 1.08997 * 109.50187 * 301.38379 * 13 12 11 34 34 H 1.08998 * 109.46969 * 180.21518 * 16 14 9 35 35 H 1.08997 * 109.47304 * 300.21145 * 16 14 9 36 36 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 37 37 H 1.07997 * 127.02852 * 359.97438 * 21 20 18 38 38 H 1.07995 * 125.43684 * 179.97438 * 22 21 20 39 39 H 1.08000 * 125.80038 * 180.26343 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0664 -1.2160 0.2248 9 7 1.3558 -2.3705 -0.2866 10 6 0.2109 -2.3810 -1.2075 11 6 0.4695 -3.4192 -2.3038 12 6 0.7689 -4.7739 -1.6577 13 6 2.0264 -4.6614 -0.7927 14 6 1.7890 -3.6382 0.3165 15 1 1.0144 -4.0061 0.9895 16 6 3.0873 -3.4184 1.0954 17 7 2.8603 -2.4325 2.1549 18 6 3.8703 -2.0793 2.9745 19 8 4.9702 -2.5786 2.8341 20 6 3.6417 -1.0878 4.0407 21 6 4.6223 -0.5900 5.0164 22 6 3.9643 0.2933 5.7828 23 8 2.6914 0.3752 5.3652 24 6 2.4777 -0.4354 4.3243 25 1 -0.4850 0.8401 0.0004 26 1 -0.6949 -2.6442 -0.6612 27 1 0.0934 -1.3945 -1.6558 28 1 -0.4127 -3.5058 -2.9382 29 1 1.3224 -3.1071 -2.9065 30 1 -0.0743 -5.0737 -1.0355 31 1 0.9293 -5.5198 -2.4360 32 1 2.2524 -5.6323 -0.3515 33 1 2.8648 -4.3382 -1.4097 34 1 3.4090 -4.3608 1.5388 35 1 3.8597 -3.0531 0.4187 36 1 1.9828 -2.0345 2.2671 37 1 5.6603 -0.8766 5.0995 38 1 4.3909 0.8495 6.6044 39 1 1.5420 -0.5554 3.7987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024331782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:56 Heat of formation + Delta-G solvation = -21.728153 kcal Electronic energy + Delta-G solvation = -22489.519210 eV Core-core repulsion = 19205.532754 eV Total energy + Delta-G solvation = -3283.986456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.44409 -40.59814 -39.22273 -35.72332 -34.89966 -33.86105 -32.39625 -31.69613 -30.62311 -27.71680 -26.60468 -24.26724 -23.73921 -22.43456 -22.15347 -21.04969 -20.60155 -19.41653 -18.21268 -17.39525 -17.10745 -17.01466 -16.59339 -16.06621 -15.74731 -15.54766 -15.25846 -14.85396 -14.59583 -14.33451 -14.04653 -13.83414 -13.61100 -13.47160 -13.29405 -12.85084 -12.80114 -12.56968 -12.32263 -12.04274 -11.78830 -11.52210 -11.24157 -11.08945 -10.91013 -10.82160 -10.51502 -9.93109 -9.67053 -8.54933 -7.82800 -5.29047 0.40046 1.16134 1.40941 1.45617 1.49945 2.03166 2.32501 2.47201 2.50025 3.32029 3.58610 3.74201 3.80435 3.99722 4.17564 4.23718 4.29078 4.43687 4.53519 4.57937 4.66123 4.75066 4.81280 4.88014 5.01084 5.02861 5.15574 5.23252 5.29271 5.37017 5.38687 5.47504 5.60597 5.64975 5.76176 5.85659 6.00618 6.44986 6.69848 7.20566 7.30447 7.89243 8.42619 9.21069 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.007045 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.713190 B = 3973.579213 C = 5077.174777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.025 4.025 3 Si 0.931 3.069 4 H -0.292 1.292 5 H -0.282 1.282 6 H -0.293 1.293 7 C -0.237 4.237 8 H 0.057 0.943 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.036 0.964 16 C 0.139 3.861 17 N -0.688 5.688 18 C 0.576 3.424 19 O -0.596 6.596 20 C -0.263 4.263 21 C -0.195 4.195 22 C -0.025 4.025 23 O -0.179 6.179 24 C 0.033 3.967 25 H 0.249 0.751 26 H 0.004 0.996 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.411 0.589 37 H 0.162 0.838 38 H 0.255 0.745 39 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -4.335 6.589 8.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.222 4.222 3 Si 0.761 3.239 4 H -0.218 1.218 5 H -0.209 1.209 6 H -0.220 1.220 7 C -0.368 4.368 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.337 5.337 18 C 0.364 3.636 19 O -0.480 6.480 20 C -0.268 4.268 21 C -0.214 4.214 22 C -0.090 4.090 23 O -0.073 6.073 24 C -0.038 4.038 25 H 0.059 0.941 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.249 0.751 37 H 0.179 0.821 38 H 0.271 0.729 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.230 -4.373 6.615 8.238 hybrid contribution 0.187 1.294 -0.423 1.375 sum 2.417 -3.078 6.192 7.325 Atomic orbital electron populations 1.70087 1.05690 1.25432 1.55313 1.25372 0.95536 0.99515 1.01779 0.85915 0.78038 0.82080 0.77828 1.21785 1.20853 1.21967 1.19134 0.91469 0.84991 1.41184 0.92509 1.44223 1.35564 1.02550 1.50122 1.20591 0.87920 0.96987 0.89276 1.22058 1.00405 0.96697 0.98364 1.21340 0.97334 0.96447 0.98832 1.21829 0.98298 0.98697 0.97419 1.20801 0.92928 0.87642 0.93185 0.94626 1.21295 0.97750 0.90994 0.88430 1.45875 1.13571 1.43095 1.31172 1.17606 0.83957 0.80952 0.81035 1.90667 1.25391 1.57749 1.74238 1.21680 0.96574 1.05708 1.02808 1.22958 1.00958 1.00854 0.96644 1.24738 0.80380 1.01616 1.02241 1.83815 1.30909 1.52844 1.39775 1.24748 0.99984 0.90486 0.88549 0.94120 0.97790 0.93205 0.91723 0.93778 0.92265 0.90807 0.89906 0.92942 0.90779 0.93729 0.75137 0.82085 0.72901 0.76175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.16 11.23 21.65 0.24 -48.92 16 2 C -0.03 -1.29 4.97 84.86 0.42 -0.87 16 3 Si 0.93 43.61 29.58 68.60 2.03 45.64 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 7 C -0.24 -11.75 6.98 84.03 0.59 -11.17 16 8 H 0.06 2.96 5.85 -2.91 -0.02 2.95 16 9 N -0.60 -26.78 2.98 -676.03 -2.01 -28.80 16 10 C 0.18 7.85 5.27 86.36 0.46 8.30 16 11 C -0.14 -4.75 6.08 30.67 0.19 -4.57 16 12 C -0.10 -2.97 5.89 30.62 0.18 -2.79 16 13 C -0.12 -3.77 5.34 30.53 0.16 -3.60 16 14 C 0.16 5.92 2.99 44.83 0.13 6.05 16 15 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 16 C 0.14 5.24 4.42 86.38 0.38 5.62 16 17 N -0.69 -26.88 3.83 -466.43 -1.79 -28.66 16 18 C 0.58 23.54 7.81 86.65 0.68 24.22 16 19 O -0.60 -27.68 16.98 -4.04 -0.07 -27.75 16 20 C -0.26 -9.32 6.31 -18.99 -0.12 -9.44 16 21 C -0.19 -5.71 11.01 23.65 0.26 -5.45 16 22 C -0.02 -0.56 12.03 66.89 0.80 0.25 16 23 O -0.18 -4.89 10.52 4.45 0.05 -4.84 16 24 C 0.03 1.02 11.61 67.39 0.78 1.81 16 25 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.05 2.54 6.19 -2.39 -0.01 2.53 16 28 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.04 1.88 7.42 -2.39 -0.02 1.86 16 36 H 0.41 16.20 6.36 -92.71 -0.59 15.61 16 37 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.26 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.22 6.37 7.47 -2.91 -0.02 6.35 16 Total: -1.00 -63.89 318.16 3.83 -60.06 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.47 Total: 24.90 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 4.91 Total: 8.37 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.56 Total: -106.38 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.02 Total: -32.59 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -63.89 3.83 -60.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024331782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.328 kcal (2) G-P(sol) polarization free energy of solvation -63.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds