Wall clock time and date at job start Mon Mar 30 2020 23:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28721 * 125.32336 * 2 1 4 4 N 1.28980 * 108.98516 * 179.75758 * 3 2 1 5 5 C 1.34189 * 107.25399 * 0.43043 * 4 3 2 6 6 C 1.48012 * 126.69505 * 179.83104 * 5 4 3 7 7 O 1.21534 * 119.99729 * 179.68854 * 6 5 4 8 8 N 1.34773 * 119.99851 * 359.69186 * 6 5 4 9 9 C 1.47861 * 126.94945 * 0.02601 * 8 6 5 10 10 C 1.56019 * 105.10532 * 181.73567 * 9 8 6 11 11 H 1.09007 * 116.24928 * 159.67520 * 10 9 8 12 12 C 1.57080 * 99.60517 * 32.80461 * 10 9 8 13 13 C 1.49298 * 126.93944 * 179.70531 * 8 6 5 14 14 H 1.08997 * 116.15370 * 16.10438 * 13 8 6 15 15 C 1.56019 * 104.09062 * 246.96416 * 13 8 6 16 16 N 1.47872 * 105.10191 * 288.76686 * 15 13 8 17 17 C 1.36936 * 126.94434 * 182.00346 * 16 15 13 18 18 H 1.08003 * 120.00561 * 173.66524 * 17 16 15 19 19 C 1.38816 * 119.99758 * 353.66970 * 17 16 15 20 20 N 1.31614 * 120.00550 * 6.41702 * 19 17 16 21 21 Si 1.86811 * 119.99731 * 186.41727 * 19 17 16 22 22 H 1.48500 * 109.46586 * 94.98321 * 21 19 17 23 23 H 1.48504 * 109.46779 * 214.98227 * 21 19 17 24 24 H 1.48493 * 109.46996 * 334.98307 * 21 19 17 25 25 N 1.28872 * 125.31719 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46999 * 269.96522 * 1 2 3 27 27 H 1.08999 * 109.46536 * 29.95750 * 1 2 3 28 28 H 1.09000 * 109.46948 * 149.95990 * 1 2 3 29 29 H 1.09002 * 110.31284 * 300.64094 * 9 8 6 30 30 H 1.09002 * 110.32112 * 62.82659 * 9 8 6 31 31 H 1.09007 * 112.37197 * 64.27495 * 12 10 9 32 32 H 1.09006 * 112.36957 * 191.71177 * 12 10 9 33 33 H 1.08999 * 110.31224 * 169.86233 * 15 13 8 34 34 H 1.08999 * 110.32081 * 47.67334 * 15 13 8 35 35 H 0.96994 * 120.00491 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2093 1.0502 0.0000 4 7 3.4470 0.6874 0.0052 5 6 3.4685 -0.6543 -0.0011 6 6 4.6693 -1.5196 -0.0020 7 8 4.5469 -2.7288 -0.0023 8 7 5.8983 -0.9667 -0.0025 9 6 6.2240 0.4756 -0.0016 10 6 7.7822 0.5406 -0.0483 11 1 8.2154 1.4792 -0.3942 12 6 8.0724 -0.7429 -0.9062 13 6 7.2062 -1.6867 0.0027 14 1 7.1741 -2.7430 -0.2642 15 6 7.8223 -1.3452 1.3948 16 7 8.2060 0.0802 1.3070 17 6 8.8249 0.8269 2.2737 18 1 9.1469 1.8343 2.0545 19 6 9.0386 0.2891 3.5355 20 7 8.7627 -0.9768 3.7667 21 14 9.7180 1.3623 4.9053 22 1 8.5956 1.9024 5.7138 23 1 10.6084 0.5512 5.7741 24 1 10.4900 2.4861 4.3170 25 7 2.2100 -1.0516 -0.0005 26 1 -0.3633 -0.0006 1.0277 27 1 -0.3632 0.8904 -0.5132 28 1 -0.3633 -0.8896 -0.5145 29 1 5.7986 0.9602 -0.8805 30 1 5.8527 0.9470 0.9084 31 1 7.6762 -0.6636 -1.9185 32 1 9.1278 -1.0157 -0.9005 33 1 8.7008 -1.9628 1.5815 34 1 7.0825 -1.4902 2.1820 35 1 8.9116 -1.3525 4.6485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032571655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:03 Heat of formation + Delta-G solvation = 170.008861 kcal Electronic energy + Delta-G solvation = -21954.647092 eV Core-core repulsion = 18607.727384 eV Total energy + Delta-G solvation = -3346.919707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.37463 -40.04324 -37.86511 -35.28280 -33.62026 -33.13624 -31.61673 -29.40617 -28.65996 -28.45018 -25.44489 -25.02630 -23.35442 -22.97114 -20.98100 -19.89291 -18.96094 -17.91724 -17.63036 -16.98114 -16.22189 -15.95158 -15.19281 -14.65165 -14.09219 -13.97995 -13.76810 -13.65561 -13.30017 -13.10417 -12.26544 -12.10368 -11.91659 -11.60509 -11.35806 -11.10655 -11.10365 -11.00964 -10.88537 -10.69996 -10.61503 -10.37621 -10.21400 -10.06084 -9.95811 -9.60195 -8.67151 -8.08433 -6.89361 -5.75815 -3.08848 1.00139 1.58016 1.70799 2.95784 3.38420 3.40060 3.45093 3.47351 4.04914 4.08765 4.44935 4.55180 4.73312 4.84611 5.05071 5.21587 5.29829 5.34653 5.55785 5.63371 5.64936 5.75185 5.92152 6.09497 6.22410 6.31721 6.41520 6.52054 6.62857 6.74774 7.39323 7.51072 7.73193 7.87978 8.10586 8.12275 8.38583 9.12280 9.73587 10.42807 11.37144 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.005216 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.747636 B = 5366.775898 C = 5877.084262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.141 5.141 3 N -0.063 5.063 4 N -0.243 5.243 5 C 0.144 3.856 6 C 0.624 3.376 7 O -0.527 6.527 8 N -0.583 5.583 9 C 0.089 3.911 10 C 0.140 3.860 11 H 0.109 0.891 12 C -0.150 4.150 13 C 0.102 3.898 14 H 0.119 0.881 15 C 0.172 3.828 16 N -0.598 5.598 17 C -0.230 4.230 18 H 0.082 0.918 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.255 5.255 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 2.532 -10.166 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.054 5.054 3 N -0.057 5.057 4 N -0.118 5.118 5 C -0.140 4.140 6 C 0.405 3.595 7 O -0.401 6.401 8 N -0.316 5.316 9 C -0.036 4.036 10 C 0.031 3.969 11 H 0.127 0.873 12 C -0.190 4.190 13 C 0.000 4.000 14 H 0.137 0.863 15 C 0.047 3.953 16 N -0.322 5.322 17 C -0.358 4.358 18 H 0.100 0.900 19 C -0.201 4.201 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.205 1.205 25 N -0.109 5.109 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.596 2.349 -9.870 16.965 hybrid contribution 0.207 0.172 0.986 1.022 sum -13.389 2.521 -8.884 16.265 Atomic orbital electron populations 1.22481 0.68866 1.06933 1.06264 1.50230 1.10962 1.00873 1.43302 1.78933 0.96705 1.14155 1.15938 1.76293 1.09317 1.10334 1.15814 1.25410 0.93020 0.90253 1.05335 1.15643 0.79790 0.85248 0.78776 1.90808 1.85062 1.12659 1.51564 1.48955 1.03971 1.09899 1.68725 1.23447 0.99128 0.79301 1.01685 1.23254 0.90240 0.96043 0.87356 0.87284 1.24164 1.00074 0.97664 0.97053 1.24514 0.79132 0.96484 0.99872 0.86320 1.21970 0.97884 0.85505 0.89912 1.45245 1.68766 1.07191 1.10994 1.19062 1.30991 0.96246 0.89534 0.90037 1.24829 1.01480 0.96323 0.97502 1.69912 1.53656 1.11283 1.21665 0.86127 0.78168 0.79368 0.82263 1.21688 1.21799 1.20522 1.75069 1.02581 1.14217 1.18986 0.87822 0.86762 0.86960 0.91928 0.90205 0.91398 0.89421 0.92568 0.93031 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.62 59.85 0.70 1.20 16 2 N -0.14 -1.77 4.39 -16.65 -0.07 -1.84 16 3 N -0.06 -0.94 13.23 60.35 0.80 -0.14 16 4 N -0.24 -4.22 10.34 32.10 0.33 -3.89 16 5 C 0.14 2.64 7.99 -156.25 -1.25 1.39 16 6 C 0.62 12.65 7.91 -12.25 -0.10 12.55 16 7 O -0.53 -11.78 17.44 5.34 0.09 -11.69 16 8 N -0.58 -11.42 2.95 -157.82 -0.47 -11.88 16 9 C 0.09 1.65 4.98 -1.68 -0.01 1.64 16 10 C 0.14 2.63 5.53 -62.56 -0.35 2.29 16 11 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 12 C -0.15 -2.51 6.81 -22.31 -0.15 -2.66 16 13 C 0.10 1.96 5.24 -62.55 -0.33 1.64 16 14 H 0.12 2.16 8.05 -51.93 -0.42 1.74 16 15 C 0.17 4.13 4.77 -1.67 -0.01 4.12 16 16 N -0.60 -14.44 3.02 -156.34 -0.47 -14.92 16 17 C -0.23 -6.16 10.36 -15.06 -0.16 -6.32 16 18 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 19 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 20 N -0.92 -26.89 10.61 55.49 0.59 -26.30 16 21 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 N -0.25 -4.13 12.16 32.11 0.39 -3.74 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 1.03 7.76 -51.93 -0.40 0.62 16 30 H 0.08 1.68 7.92 -51.93 -0.41 1.27 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.06 1.46 7.64 -51.93 -0.40 1.06 16 34 H 0.05 1.43 7.53 -51.93 -0.39 1.04 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -34.48 299.61 -5.16 -39.64 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.10 Total: -2.26 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: -1.74 Total: 15.64 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: 1.10 Total: -62.71 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.48 -5.16 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032571655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.653 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds