Wall clock time and date at job start Mon Mar 30 2020 23:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28721 * 125.32336 * 2 1 4 4 N 1.28980 * 108.98516 * 179.75758 * 3 2 1 5 5 C 1.34189 * 107.25399 * 0.43043 * 4 3 2 6 6 C 1.48012 * 126.69505 * 179.83104 * 5 4 3 7 7 O 1.21534 * 119.99729 * 179.68854 * 6 5 4 8 8 N 1.34773 * 119.99851 * 359.69186 * 6 5 4 9 9 C 1.47861 * 126.94945 * 0.02601 * 8 6 5 10 10 C 1.56019 * 105.10532 * 181.73567 * 9 8 6 11 11 H 1.09007 * 116.24928 * 159.67520 * 10 9 8 12 12 C 1.57080 * 99.60517 * 32.80461 * 10 9 8 13 13 C 1.49298 * 126.93944 * 179.70531 * 8 6 5 14 14 H 1.08997 * 116.15370 * 16.10438 * 13 8 6 15 15 C 1.56019 * 104.09062 * 246.96416 * 13 8 6 16 16 N 1.47872 * 105.10191 * 288.76686 * 15 13 8 17 17 C 1.36936 * 126.94434 * 182.00346 * 16 15 13 18 18 H 1.08003 * 120.00561 * 173.66524 * 17 16 15 19 19 C 1.38816 * 119.99758 * 353.66970 * 17 16 15 20 20 N 1.31614 * 120.00550 * 6.41702 * 19 17 16 21 21 Si 1.86811 * 119.99731 * 186.41727 * 19 17 16 22 22 H 1.48500 * 109.46586 * 94.98321 * 21 19 17 23 23 H 1.48504 * 109.46779 * 214.98227 * 21 19 17 24 24 H 1.48493 * 109.46996 * 334.98307 * 21 19 17 25 25 N 1.28872 * 125.31719 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46999 * 269.96522 * 1 2 3 27 27 H 1.08999 * 109.46536 * 29.95750 * 1 2 3 28 28 H 1.09000 * 109.46948 * 149.95990 * 1 2 3 29 29 H 1.09002 * 110.31284 * 300.64094 * 9 8 6 30 30 H 1.09002 * 110.32112 * 62.82659 * 9 8 6 31 31 H 1.09007 * 112.37197 * 64.27495 * 12 10 9 32 32 H 1.09006 * 112.36957 * 191.71177 * 12 10 9 33 33 H 1.08999 * 110.31224 * 169.86233 * 15 13 8 34 34 H 1.08999 * 110.32081 * 47.67334 * 15 13 8 35 35 H 0.96994 * 120.00491 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2093 1.0502 0.0000 4 7 3.4470 0.6874 0.0052 5 6 3.4685 -0.6543 -0.0011 6 6 4.6693 -1.5196 -0.0020 7 8 4.5469 -2.7288 -0.0023 8 7 5.8983 -0.9667 -0.0025 9 6 6.2240 0.4756 -0.0016 10 6 7.7822 0.5406 -0.0483 11 1 8.2154 1.4792 -0.3942 12 6 8.0724 -0.7429 -0.9062 13 6 7.2062 -1.6867 0.0027 14 1 7.1741 -2.7430 -0.2642 15 6 7.8223 -1.3452 1.3948 16 7 8.2060 0.0802 1.3070 17 6 8.8249 0.8269 2.2737 18 1 9.1469 1.8343 2.0545 19 6 9.0386 0.2891 3.5355 20 7 8.7627 -0.9768 3.7667 21 14 9.7180 1.3623 4.9053 22 1 8.5956 1.9024 5.7138 23 1 10.6084 0.5512 5.7741 24 1 10.4900 2.4861 4.3170 25 7 2.2100 -1.0516 -0.0005 26 1 -0.3633 -0.0006 1.0277 27 1 -0.3632 0.8904 -0.5132 28 1 -0.3633 -0.8896 -0.5145 29 1 5.7986 0.9602 -0.8805 30 1 5.8527 0.9470 0.9084 31 1 7.6762 -0.6636 -1.9185 32 1 9.1278 -1.0157 -0.9005 33 1 8.7008 -1.9628 1.5815 34 1 7.0825 -1.4902 2.1820 35 1 8.9116 -1.3525 4.6485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032571655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:03 Heat of formation + Delta-G solvation = 144.489507 kcal Electronic energy + Delta-G solvation = -21955.753694 eV Core-core repulsion = 18607.727384 eV Total energy + Delta-G solvation = -3348.026310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.55397 -41.63927 -39.48561 -36.36169 -35.46087 -34.35626 -33.38155 -30.96041 -30.29279 -29.55332 -27.00279 -26.66578 -24.97963 -24.09270 -22.52959 -21.46129 -20.53235 -19.43323 -18.74264 -18.41278 -17.72643 -17.58930 -16.83021 -16.34335 -15.77225 -15.37682 -15.07562 -14.89829 -14.29728 -14.15359 -13.87720 -13.59890 -13.35070 -13.18295 -13.15303 -12.84937 -12.74098 -12.40310 -12.27676 -12.24700 -12.17321 -12.01530 -11.84560 -11.59577 -11.50960 -11.45171 -10.72520 -9.70545 -8.88383 -7.84432 -5.18292 -0.20019 0.25812 0.79350 1.47483 1.49273 1.57814 1.59922 1.88644 2.49886 2.68955 3.00875 3.33534 3.43419 3.69758 3.84469 3.93105 4.00874 4.04611 4.20731 4.22048 4.48930 4.59014 4.60381 4.68545 4.83852 4.97978 4.98817 5.04334 5.14423 5.27408 5.44492 5.52644 5.66936 6.11853 6.33093 6.69640 7.02790 7.04882 7.72526 8.43201 9.27759 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.005216 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.747636 B = 5366.775898 C = 5877.084262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.115 5.115 3 N -0.063 5.063 4 N -0.261 5.261 5 C 0.121 3.879 6 C 0.621 3.379 7 O -0.557 6.557 8 N -0.585 5.585 9 C 0.101 3.899 10 C 0.135 3.865 11 H 0.139 0.861 12 C -0.125 4.125 13 C 0.106 3.894 14 H 0.129 0.871 15 C 0.184 3.816 16 N -0.617 5.617 17 C -0.229 4.229 18 H 0.096 0.904 19 C -0.069 4.069 20 N -0.956 5.956 21 Si 0.973 3.027 22 H -0.296 1.296 23 H -0.300 1.300 24 H -0.259 1.259 25 N -0.263 5.263 26 H 0.127 0.873 27 H 0.146 0.854 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.000 1.000 35 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 4.319 -12.146 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.031 5.031 3 N -0.056 5.056 4 N -0.135 5.135 5 C -0.163 4.163 6 C 0.404 3.596 7 O -0.433 6.433 8 N -0.317 5.317 9 C -0.023 4.023 10 C 0.029 3.971 11 H 0.157 0.843 12 C -0.164 4.164 13 C 0.004 3.996 14 H 0.147 0.853 15 C 0.058 3.942 16 N -0.341 5.341 17 C -0.358 4.358 18 H 0.114 0.886 19 C -0.261 4.261 20 N -0.605 5.605 21 Si 0.802 3.198 22 H -0.224 1.224 23 H -0.227 1.227 24 H -0.183 1.183 25 N -0.119 5.119 26 H 0.145 0.855 27 H 0.164 0.836 28 H 0.152 0.848 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.044 0.956 34 H 0.018 0.982 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.823 4.199 -11.900 19.466 hybrid contribution 0.370 -0.347 1.576 1.655 sum -14.453 3.852 -10.324 18.174 Atomic orbital electron populations 1.23280 0.64836 1.09656 1.08599 1.50850 1.12745 0.99460 1.40001 1.78841 0.96182 1.14516 1.16087 1.76232 1.10772 1.09854 1.16680 1.24976 0.93047 0.90535 1.07705 1.15890 0.80483 0.85201 0.77999 1.90774 1.85692 1.13966 1.52914 1.49008 1.03945 1.10357 1.68426 1.23283 0.98774 0.78675 1.01583 1.23670 0.90189 0.98246 0.85002 0.84345 1.24077 0.99937 0.94532 0.97814 1.24444 0.79588 0.97931 0.97603 0.85286 1.21587 0.95475 0.85712 0.91454 1.45506 1.68503 1.07264 1.12872 1.19546 1.29381 0.96769 0.90069 0.88638 1.25639 1.03104 0.97396 0.99995 1.70143 1.55947 1.13074 1.21327 0.85123 0.77203 0.78134 0.79314 1.22357 1.22710 1.18345 1.75022 1.02202 1.15514 1.19139 0.85526 0.83575 0.84825 0.88909 0.93121 0.87618 0.88910 0.95633 0.98226 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.62 127.77 1.49 2.00 16 2 N -0.12 -2.63 4.39 -206.58 -0.91 -3.54 16 3 N -0.06 -1.74 13.23 37.02 0.49 -1.25 16 4 N -0.26 -8.82 10.34 -52.36 -0.54 -9.36 16 5 C 0.12 4.37 7.99 137.15 1.10 5.47 16 6 C 0.62 25.34 7.91 86.84 0.69 26.03 16 7 O -0.56 -25.32 17.44 -3.82 -0.07 -25.39 16 8 N -0.59 -22.77 2.95 -771.51 -2.27 -25.05 16 9 C 0.10 3.61 4.98 87.16 0.43 4.05 16 10 C 0.14 4.82 5.53 46.93 0.26 5.08 16 11 H 0.14 4.13 8.14 -2.38 -0.02 4.11 16 12 C -0.12 -3.83 6.81 33.46 0.23 -3.60 16 13 C 0.11 4.09 5.24 46.93 0.25 4.33 16 14 H 0.13 4.68 8.05 -2.39 -0.02 4.67 16 15 C 0.18 9.16 4.77 87.16 0.42 9.58 16 16 N -0.62 -29.96 3.02 -648.54 -1.96 -31.92 16 17 C -0.23 -12.26 10.36 84.03 0.87 -11.39 16 18 H 0.10 4.74 7.84 -2.91 -0.02 4.71 16 19 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 20 N -0.96 -58.63 10.61 21.65 0.23 -58.40 16 21 Si 0.97 45.80 29.56 68.60 2.03 47.83 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 N -0.26 -8.23 12.16 -52.31 -0.64 -8.86 16 26 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 2.80 7.76 -2.39 -0.02 2.78 16 30 H 0.05 2.13 7.92 -2.39 -0.02 2.11 16 31 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 33 H 0.03 1.41 7.64 -2.39 -0.02 1.39 16 34 H 0.00 -0.03 7.53 -2.39 -0.02 -0.05 16 35 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -78.93 299.61 3.67 -75.26 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.12 Total: 2.55 kcal Atomic # 6 Polarization: 31.93 SS G_CDS: 6.19 Total: 38.12 kcal Atomic # 7 Polarization: -132.77 SS G_CDS: -5.60 Total: -138.37 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.07 Total: -25.39 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.93 3.67 -75.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032571655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.747 kcal (2) G-P(sol) polarization free energy of solvation -78.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds