Wall clock time and date at job start Tue Mar 31 2020 00:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50134 * 105.41354 * 270.59047 * 12 11 10 14 14 C 1.54839 * 110.81390 * 97.68270 * 13 12 11 15 15 H 1.09001 * 109.35942 * 81.33887 * 14 13 12 16 16 N 1.46499 * 109.35822 * 200.92577 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00159 * 16 14 13 18 18 O 1.21702 * 119.99511 * 359.97438 * 17 16 14 19 19 C 1.46650 * 120.00364 * 180.02562 * 17 16 14 20 20 C 1.36546 * 125.99128 * 179.71933 * 19 17 16 21 21 C 1.40362 * 106.70995 * 179.90754 * 20 19 17 22 22 C 1.35127 * 107.11494 * 0.34813 * 21 20 19 23 23 O 1.33934 * 108.76909 * 359.78001 * 22 21 20 24 24 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 25 25 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 27 27 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 28 28 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 29 29 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 30 30 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 31 31 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 32 32 H 1.09000 * 109.20837 * 218.02810 * 13 12 11 33 33 H 1.08997 * 109.20367 * 337.34387 * 13 12 11 34 34 H 0.96996 * 119.99921 * 25.00609 * 16 14 13 35 35 H 1.08007 * 126.64191 * 0.02782 * 20 19 17 36 36 H 1.07996 * 126.44105 * 180.15207 * 21 20 19 37 37 H 1.07996 * 125.61869 * 179.78615 * 22 21 20 38 38 H 1.08991 * 108.16323 * 33.30724 * 24 9 7 39 39 H 1.09001 * 108.15805 * 149.87591 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4480 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6341 -4.9485 -2.4331 19 6 3.8126 -3.2986 -4.0649 20 6 5.0035 -3.6719 -4.6189 21 6 5.2705 -2.7613 -5.6531 22 6 4.2478 -1.8785 -5.6797 23 8 3.3712 -2.2056 -4.7213 24 6 1.8609 -3.6319 -0.0423 25 1 -0.4850 0.8400 0.0004 26 1 0.3194 -2.9907 2.1359 27 1 0.0606 -1.2837 1.6871 28 1 -1.8584 -2.6529 1.1593 29 1 -1.1129 -1.9535 -0.2841 30 1 -0.2672 -4.7215 0.5101 31 1 -1.8782 -4.4986 -0.2328 32 1 -0.6951 -4.5284 -2.1772 33 1 -0.3869 -2.8286 -1.7622 34 1 1.5622 -2.7047 -2.9018 35 1 5.6195 -4.5073 -4.3204 36 1 6.1330 -2.7636 -6.3031 37 1 4.1527 -1.0464 -6.3615 38 1 2.9443 -3.5745 -0.1465 39 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034078615.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:59 Heat of formation + Delta-G solvation = 7.304744 kcal Electronic energy + Delta-G solvation = -22641.125875 eV Core-core repulsion = 19358.398379 eV Total energy + Delta-G solvation = -3282.727495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.50862 -39.26848 -37.60232 -34.30869 -33.19932 -32.84609 -31.07727 -30.43037 -29.15331 -26.15192 -24.44068 -23.24236 -22.41761 -21.60515 -20.23656 -19.60792 -19.15703 -18.08617 -16.64838 -16.14716 -16.08713 -15.55976 -15.00144 -14.63951 -14.16924 -13.73691 -13.67306 -13.21326 -13.02040 -12.87507 -12.59570 -12.36521 -12.18234 -11.78923 -11.56336 -11.29272 -10.82261 -10.78755 -10.47320 -10.12685 -9.98376 -9.96263 -9.79830 -9.68107 -9.42089 -9.25072 -8.75011 -8.53094 -8.30138 -6.70348 -5.81011 -3.19374 1.28130 2.46178 2.90348 3.36140 3.44202 3.46098 3.54567 3.72795 4.49397 4.86428 4.98606 5.17896 5.30972 5.38216 5.48336 5.64171 5.74022 5.83885 5.93852 6.00033 6.11676 6.21009 6.25250 6.40534 6.44112 6.51174 6.61807 6.83092 6.89927 6.95474 6.96870 7.03286 7.19924 7.26769 7.61158 7.74605 7.98834 8.01295 8.41379 8.56773 9.18311 9.85326 10.38372 11.25541 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.007268 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.023014 B = 3851.440760 C = 5138.799496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.003 3.997 3 Si 0.896 3.104 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.165 3.835 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.115 3.885 15 H 0.075 0.925 16 N -0.686 5.686 17 C 0.595 3.405 18 O -0.538 6.538 19 C -0.061 4.061 20 C -0.136 4.136 21 C -0.228 4.228 22 C -0.015 4.015 23 O -0.158 6.158 24 C 0.150 3.850 25 H 0.252 0.748 26 H 0.006 0.994 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.406 0.594 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.206 0.794 38 H 0.038 0.962 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -5.063 -8.350 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.082 0.918 9 N -0.303 5.303 10 C 0.041 3.959 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.008 3.992 15 H 0.093 0.907 16 N -0.334 5.334 17 C 0.380 3.620 18 O -0.418 6.418 19 C -0.114 4.114 20 C -0.156 4.156 21 C -0.247 4.247 22 C -0.085 4.085 23 O -0.053 6.053 24 C 0.019 3.981 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.241 0.759 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.223 0.777 38 H 0.056 0.944 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.456 -5.443 -7.848 9.861 hybrid contribution 0.457 1.373 -0.533 1.542 sum 2.913 -4.071 -8.381 9.762 Atomic orbital electron populations 1.69970 1.04947 1.25114 1.54421 1.24859 0.95208 0.98019 1.01429 0.86360 0.79263 0.84130 0.77557 1.21663 1.21969 1.20651 1.19176 0.93505 0.85262 1.39077 0.91801 1.44268 1.33783 1.00765 1.51473 1.20175 0.85341 1.00438 0.89915 1.21014 0.98089 0.95553 1.02295 1.20975 0.98633 0.98921 0.96464 1.21678 0.93200 1.02459 0.97506 1.22840 0.92109 0.95859 0.88398 0.90720 1.45972 1.21152 1.31616 1.34631 1.16531 0.81305 0.83326 0.80816 1.90827 1.65811 1.26440 1.58708 1.22388 0.98116 0.91139 0.99757 1.21902 0.95856 1.01365 0.96505 1.21792 1.01953 0.98192 1.02739 1.24348 0.89832 1.01283 0.93038 1.84127 1.44411 1.38351 1.38413 1.20717 0.97036 0.88592 0.91727 0.93818 0.97630 0.89306 0.95632 0.88121 0.92380 0.93179 0.94156 0.90099 0.75879 0.82517 0.82954 0.77699 0.94381 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 9.43 55.49 0.52 -23.24 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.25 29.60 -169.99 -5.03 16.22 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.28 9.62 -15.06 -0.14 -6.42 16 8 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.58 -13.79 2.61 -175.41 -0.46 -14.24 16 10 C 0.16 3.72 5.25 -5.20 -0.03 3.69 16 11 C -0.13 -2.68 5.02 -30.18 -0.15 -2.83 16 12 C -0.11 -1.97 5.76 -28.40 -0.16 -2.13 16 13 C -0.11 -1.98 5.23 -27.19 -0.14 -2.12 16 14 C 0.12 2.18 2.91 -66.22 -0.19 1.99 16 15 H 0.07 1.39 7.57 -51.93 -0.39 1.00 16 16 N -0.69 -12.91 5.08 -53.46 -0.27 -13.19 16 17 C 0.60 11.36 7.60 -12.87 -0.10 11.26 16 18 O -0.54 -11.38 16.53 5.19 0.09 -11.30 16 19 C -0.06 -1.04 7.13 -36.80 -0.26 -1.30 16 20 C -0.14 -1.99 10.62 -39.39 -0.42 -2.40 16 21 C -0.23 -2.69 10.87 -39.89 -0.43 -3.13 16 22 C -0.01 -0.18 12.08 29.63 0.36 0.18 16 23 O -0.16 -2.47 10.40 4.98 0.05 -2.42 16 24 C 0.15 3.19 4.75 -4.92 -0.02 3.16 16 25 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 27 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 2.36 5.28 -51.93 -0.27 2.09 16 30 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.66 6.58 -51.93 -0.34 1.32 16 34 H 0.41 7.62 8.20 -40.82 -0.33 7.28 16 35 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 36 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.04 0.88 7.80 -51.93 -0.41 0.48 16 39 H 0.04 0.78 6.89 -51.93 -0.36 0.43 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -28.72 314.31 -7.40 -36.13 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.26 Total: 7.37 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.79 Total: -0.06 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.21 Total: -50.67 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.14 Total: -13.72 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.72 -7.40 -36.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034078615.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.431 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds