Wall clock time and date at job start Tue Mar 31 2020 00:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50134 * 105.41354 * 270.59047 * 12 11 10 14 14 C 1.54839 * 110.81390 * 97.68270 * 13 12 11 15 15 H 1.09001 * 109.35942 * 81.33887 * 14 13 12 16 16 N 1.46499 * 109.35822 * 200.92577 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00159 * 16 14 13 18 18 O 1.21702 * 119.99511 * 359.97438 * 17 16 14 19 19 C 1.46650 * 120.00364 * 180.02562 * 17 16 14 20 20 C 1.36546 * 125.99128 * 179.71933 * 19 17 16 21 21 C 1.40362 * 106.70995 * 179.90754 * 20 19 17 22 22 C 1.35127 * 107.11494 * 0.34813 * 21 20 19 23 23 O 1.33934 * 108.76909 * 359.78001 * 22 21 20 24 24 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 25 25 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 27 27 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 28 28 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 29 29 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 30 30 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 31 31 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 32 32 H 1.09000 * 109.20837 * 218.02810 * 13 12 11 33 33 H 1.08997 * 109.20367 * 337.34387 * 13 12 11 34 34 H 0.96996 * 119.99921 * 25.00609 * 16 14 13 35 35 H 1.08007 * 126.64191 * 0.02782 * 20 19 17 36 36 H 1.07996 * 126.44105 * 180.15207 * 21 20 19 37 37 H 1.07996 * 125.61869 * 179.78615 * 22 21 20 38 38 H 1.08991 * 108.16323 * 33.30724 * 24 9 7 39 39 H 1.09001 * 108.15805 * 149.87591 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4480 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6341 -4.9485 -2.4331 19 6 3.8126 -3.2986 -4.0649 20 6 5.0035 -3.6719 -4.6189 21 6 5.2705 -2.7613 -5.6531 22 6 4.2478 -1.8785 -5.6797 23 8 3.3712 -2.2056 -4.7213 24 6 1.8609 -3.6319 -0.0423 25 1 -0.4850 0.8400 0.0004 26 1 0.3194 -2.9907 2.1359 27 1 0.0606 -1.2837 1.6871 28 1 -1.8584 -2.6529 1.1593 29 1 -1.1129 -1.9535 -0.2841 30 1 -0.2672 -4.7215 0.5101 31 1 -1.8782 -4.4986 -0.2328 32 1 -0.6951 -4.5284 -2.1772 33 1 -0.3869 -2.8286 -1.7622 34 1 1.5622 -2.7047 -2.9018 35 1 5.6195 -4.5073 -4.3204 36 1 6.1330 -2.7636 -6.3031 37 1 4.1527 -1.0464 -6.3615 38 1 2.9443 -3.5745 -0.1465 39 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034078615.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:58 Heat of formation + Delta-G solvation = -10.337430 kcal Electronic energy + Delta-G solvation = -22641.890897 eV Core-core repulsion = 19358.398379 eV Total energy + Delta-G solvation = -3283.492517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.60513 -40.79103 -39.23011 -35.94679 -34.83666 -33.99204 -32.91415 -31.96442 -30.43566 -27.96946 -25.98428 -24.92435 -23.86593 -22.66671 -21.74774 -21.01268 -20.78756 -19.36847 -18.56651 -17.35744 -17.29686 -17.07633 -16.77849 -16.21088 -15.81223 -15.43350 -15.21315 -14.88030 -14.20317 -14.04920 -13.93174 -13.77983 -13.52959 -13.42673 -13.26333 -13.20365 -12.67543 -12.41097 -12.32079 -11.92667 -11.83322 -11.32836 -11.25878 -11.11497 -11.02111 -10.92879 -10.47649 -10.12162 -9.61045 -8.60334 -7.81031 -5.20798 0.08592 1.44066 1.46106 1.48779 1.54734 1.77738 2.17294 2.38000 2.53554 3.31135 3.60466 3.77476 3.95503 3.98777 4.12702 4.16442 4.41707 4.52961 4.57874 4.65483 4.68366 4.83729 4.90088 4.92604 4.97161 5.05210 5.20976 5.31079 5.32806 5.43053 5.44366 5.60036 5.63258 5.70219 5.81166 5.92268 6.24176 6.42512 6.55675 7.09496 7.20458 7.91921 8.41889 9.22095 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.007268 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.023014 B = 3851.440760 C = 5138.799496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.032 4.032 3 Si 0.947 3.053 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.247 4.247 8 H 0.045 0.955 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.123 4.123 12 C -0.104 4.104 13 C -0.100 4.100 14 C 0.121 3.879 15 H 0.082 0.918 16 N -0.688 5.688 17 C 0.593 3.407 18 O -0.569 6.569 19 C -0.107 4.107 20 C -0.129 4.129 21 C -0.228 4.228 22 C -0.001 4.001 23 O -0.178 6.178 24 C 0.153 3.847 25 H 0.248 0.752 26 H 0.021 0.979 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.189 0.811 37 H 0.252 0.748 38 H 0.011 0.989 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -5.247 -9.802 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.229 4.229 3 Si 0.777 3.223 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.063 0.937 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.162 4.162 12 C -0.141 4.141 13 C -0.138 4.138 14 C 0.014 3.986 15 H 0.100 0.900 16 N -0.335 5.335 17 C 0.380 3.620 18 O -0.451 6.451 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.247 4.247 22 C -0.070 4.070 23 O -0.073 6.073 24 C 0.023 3.977 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.240 0.760 35 H 0.179 0.821 36 H 0.206 0.794 37 H 0.268 0.732 38 H 0.029 0.971 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.611 -5.640 -9.303 11.188 hybrid contribution 0.497 1.453 -0.139 1.542 sum 3.107 -4.187 -9.442 10.786 Atomic orbital electron populations 1.70097 1.05424 1.25083 1.54739 1.25332 0.95910 0.99885 1.01767 0.85572 0.78177 0.81462 0.77041 1.21979 1.21903 1.20823 1.19104 0.92842 0.86565 1.39231 0.93719 1.44312 1.34175 1.00840 1.52020 1.20121 0.85898 0.99087 0.90476 1.20835 0.97435 0.96676 1.01248 1.20945 1.00356 0.97119 0.95715 1.21569 0.92380 1.01313 0.98551 1.22683 0.92801 0.95991 0.87104 0.89993 1.45966 1.21370 1.31574 1.34573 1.16840 0.80990 0.83015 0.81135 1.90784 1.66498 1.27806 1.60046 1.22039 0.99554 0.93151 1.01175 1.22236 0.94752 1.01491 0.96491 1.22201 1.03160 0.97064 1.02247 1.25392 0.88495 1.01551 0.91540 1.84107 1.45689 1.38091 1.39418 1.20699 0.95441 0.88016 0.93542 0.94273 0.96137 0.92403 0.94431 0.91077 0.91737 0.90293 0.91582 0.92846 0.76030 0.82100 0.79366 0.73237 0.97114 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.70 9.43 21.65 0.20 -48.50 16 2 C -0.03 -1.71 4.91 84.86 0.42 -1.30 16 3 Si 0.95 44.22 29.60 68.60 2.03 46.25 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.25 -13.21 9.62 84.03 0.81 -12.40 16 8 H 0.05 2.53 7.89 -2.91 -0.02 2.51 16 9 N -0.59 -28.46 2.61 -708.86 -1.85 -30.31 16 10 C 0.17 7.57 5.25 83.58 0.44 8.01 16 11 C -0.12 -4.95 5.02 28.36 0.14 -4.81 16 12 C -0.10 -3.41 5.76 29.51 0.17 -3.24 16 13 C -0.10 -3.47 5.23 30.30 0.16 -3.31 16 14 C 0.12 4.58 2.91 46.10 0.13 4.71 16 15 H 0.08 3.00 7.57 -2.39 -0.02 2.98 16 16 N -0.69 -26.43 5.08 -441.27 -2.24 -28.67 16 17 C 0.59 23.19 7.60 86.44 0.66 23.85 16 18 O -0.57 -24.69 16.53 -4.36 -0.07 -24.76 16 19 C -0.11 -3.64 7.13 24.07 0.17 -3.47 16 20 C -0.13 -3.64 10.62 22.39 0.24 -3.40 16 21 C -0.23 -4.71 10.87 22.07 0.24 -4.47 16 22 C 0.00 -0.01 12.08 67.10 0.81 0.80 16 23 O -0.18 -5.39 10.40 -5.11 -0.05 -5.44 16 24 C 0.15 6.56 4.75 87.42 0.41 6.98 16 25 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 26 H 0.02 0.86 8.13 -2.39 -0.02 0.84 16 27 H 0.06 2.98 6.06 -2.39 -0.01 2.96 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 3.34 5.28 -2.39 -0.01 3.33 16 30 H 0.06 2.07 6.28 -2.39 -0.02 2.05 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 2.18 6.58 -2.39 -0.02 2.17 16 34 H 0.40 15.64 8.20 -92.71 -0.76 14.88 16 35 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.25 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.01 0.51 7.80 -2.39 -0.02 0.49 16 39 H 0.05 2.08 6.89 -2.39 -0.02 2.07 16 Total: -1.00 -63.65 314.31 3.13 -60.52 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.31 Total: 22.97 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.80 Total: 7.94 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.89 Total: -107.48 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.13 Total: -30.20 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -63.65 3.13 -60.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034078615.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.185 kcal (2) G-P(sol) polarization free energy of solvation -63.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds