Wall clock time and date at job start Tue Mar 31 2020 00:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47158 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.47014 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.47268 * 150.00125 * 3 2 1 7 7 C 1.38812 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99522 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00539 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00214 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47343 * 35.00504 * 10 9 7 12 12 C 1.53001 * 109.47237 * 155.00528 * 10 9 7 13 13 C 1.52994 * 109.47381 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47365 * 299.99782 * 13 12 10 15 15 H 1.08993 * 109.47076 * 300.00269 * 14 13 12 16 16 N 1.46497 * 109.47409 * 179.97438 * 14 13 12 17 17 C 1.34776 * 120.00189 * 155.00341 * 16 14 13 18 18 O 1.21691 * 119.99732 * 359.97438 * 17 16 14 19 19 C 1.46655 * 119.99774 * 180.02562 * 17 16 14 20 20 C 1.36544 * 125.98440 * 179.97438 * 19 17 16 21 21 C 1.40365 * 106.70793 * 179.97438 * 20 19 17 22 22 C 1.35130 * 107.11495 * 0.02562 * 21 20 19 23 23 O 1.33929 * 108.76540 * 0.26561 * 22 21 20 24 24 C 1.53001 * 109.46693 * 59.99797 * 14 13 12 25 25 C 1.52994 * 109.47381 * 300.00193 * 24 14 13 26 26 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00086 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47399 * 59.99619 * 12 10 9 29 29 H 1.09002 * 109.47024 * 300.00187 * 12 10 9 30 30 H 1.09000 * 109.47483 * 179.97438 * 13 12 10 31 31 H 1.09010 * 109.47015 * 59.99944 * 13 12 10 32 32 H 0.97004 * 119.99862 * 335.00224 * 16 14 13 33 33 H 1.08003 * 126.64583 * 0.02562 * 20 19 17 34 34 H 1.08002 * 126.43840 * 180.02562 * 21 20 19 35 35 H 1.08002 * 125.61315 * 179.97438 * 22 21 20 36 36 H 1.08998 * 109.47399 * 60.00540 * 24 14 13 37 37 H 1.09002 * 109.47024 * 179.97438 * 24 14 13 38 38 H 1.09010 * 109.47015 * 300.00055 * 25 24 14 39 39 H 1.09000 * 109.47483 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5647 -3.2065 -0.5902 12 6 5.4992 -2.2589 -0.6112 13 6 6.2644 -3.5837 -0.6106 14 6 6.4111 -4.0874 0.8267 15 1 6.9584 -3.3514 1.4155 16 7 7.1433 -5.3562 0.8272 17 6 7.8264 -5.7397 1.9239 18 8 7.8352 -5.0317 2.9136 19 6 8.5598 -7.0097 1.9241 20 6 9.2890 -7.5149 2.9622 21 6 9.8136 -8.7420 2.5273 22 6 9.3875 -8.9294 1.2587 23 8 8.6374 -7.8806 0.8967 24 6 5.0241 -4.2993 1.4368 25 6 4.2588 -2.9745 1.4362 26 1 -0.4851 0.8400 0.0004 27 1 3.8647 -0.3621 -0.0007 28 1 6.0467 -1.5232 -0.0221 29 1 5.3947 -1.8996 -1.6350 30 1 7.2524 -3.4329 -1.0456 31 1 5.7170 -4.3198 -1.1995 32 1 7.1366 -5.9204 0.0381 33 1 9.4333 -7.0590 3.9306 34 1 10.4400 -9.4106 3.0991 35 1 9.6182 -9.7822 0.6373 36 1 4.4767 -5.0353 0.8480 37 1 5.1285 -4.6586 2.4605 38 1 4.8062 -2.2384 2.0251 39 1 3.2708 -3.1253 1.8712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034580691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:38 Heat of formation + Delta-G solvation = -19.592761 kcal Electronic energy + Delta-G solvation = -21163.290790 eV Core-core repulsion = 17879.396932 eV Total energy + Delta-G solvation = -3283.893858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.98807 -39.94086 -38.03917 -35.09175 -33.49453 -33.03260 -31.16170 -30.50162 -30.12876 -27.71429 -24.13215 -22.88379 -22.40707 -22.07501 -20.92098 -20.48927 -19.74257 -18.69028 -17.48075 -16.63211 -16.56016 -16.31524 -15.14838 -14.79255 -14.58383 -14.18690 -13.83596 -13.51080 -13.45246 -13.32967 -13.05172 -12.92240 -12.65119 -12.19437 -11.98718 -11.76895 -11.18166 -10.90901 -10.87701 -10.73084 -10.40914 -10.36471 -10.24835 -10.08759 -9.83581 -9.55511 -9.22101 -8.93637 -8.86779 -7.24113 -5.74764 -3.09996 0.77433 2.02512 2.37504 2.98557 3.03263 3.39724 3.42877 3.47480 4.36380 4.55918 4.61446 4.67480 4.82463 4.94415 5.10494 5.29165 5.42402 5.46551 5.50669 5.53254 5.55809 5.61417 5.74689 5.78754 5.91567 5.96934 6.08329 6.15476 6.17836 6.35171 6.40242 6.47134 6.53743 6.64658 6.90164 7.05805 7.30957 7.92274 8.02092 8.44591 9.23454 9.96172 10.16177 11.43695 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047711 B = 0.003062 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.721360 B = 9142.421049 C = 9164.271189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.181 3.819 11 H 0.056 0.944 12 C -0.124 4.124 13 C -0.119 4.119 14 C 0.144 3.856 15 H 0.090 0.910 16 N -0.713 5.713 17 C 0.600 3.400 18 O -0.518 6.518 19 C -0.076 4.076 20 C -0.124 4.124 21 C -0.226 4.226 22 C -0.010 4.010 23 O -0.164 6.164 24 C -0.125 4.125 25 C -0.132 4.132 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.403 0.597 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.210 0.790 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.168 -17.844 0.561 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.072 3.928 11 H 0.074 0.926 12 C -0.163 4.163 13 C -0.157 4.157 14 C 0.040 3.960 15 H 0.109 0.891 16 N -0.363 5.363 17 C 0.386 3.614 18 O -0.395 6.395 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.245 4.245 22 C -0.079 4.079 23 O -0.060 6.060 24 C -0.164 4.164 25 C -0.173 4.173 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.744 -17.297 0.963 27.026 hybrid contribution 0.684 0.704 -0.111 0.987 sum 21.427 -16.593 0.852 27.114 Atomic orbital electron populations 1.69701 1.05117 1.25783 1.57725 1.24676 0.95231 0.97216 1.02150 0.86548 0.79265 0.85005 0.77714 1.21149 1.21827 1.20267 1.19079 0.80633 0.94662 1.42736 0.89232 1.42793 1.03995 1.02067 1.90284 1.20222 0.90230 0.89142 0.93213 0.92630 1.21793 0.96867 0.95781 1.01830 1.21740 1.00660 0.98546 0.94788 1.21217 0.92830 0.84134 0.97798 0.89146 1.46078 1.50716 1.23682 1.15791 1.16564 0.78433 0.82562 0.83848 1.90905 1.62886 1.52501 1.33253 1.22229 1.07763 0.94305 0.88483 1.22010 0.97140 0.95359 0.99934 1.21881 1.06666 0.99291 0.96620 1.24416 0.95214 0.91251 0.97062 1.84063 1.56459 1.26887 1.38548 1.21911 0.94444 0.99350 1.00720 1.22193 1.00056 0.94682 1.00394 0.93107 0.80692 0.92027 0.91157 0.91667 0.91213 0.76237 0.82209 0.82603 0.77343 0.91951 0.92087 0.92529 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.51 13.97 55.49 0.78 -28.74 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 7 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.75 -17.56 4.92 -53.43 -0.26 -17.82 16 10 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 11 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.12 -1.83 5.39 -26.73 -0.14 -1.97 16 13 C -0.12 -1.38 5.39 -26.73 -0.14 -1.53 16 14 C 0.14 1.84 2.46 -67.93 -0.17 1.67 16 15 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 16 N -0.71 -8.02 5.07 -55.13 -0.28 -8.30 16 17 C 0.60 7.83 7.75 -12.86 -0.10 7.73 16 18 O -0.52 -8.49 16.53 5.20 0.09 -8.41 16 19 C -0.08 -0.83 7.13 -36.80 -0.26 -1.10 16 20 C -0.12 -1.22 10.62 -39.39 -0.42 -1.64 16 21 C -0.23 -1.62 10.87 -39.89 -0.43 -2.05 16 22 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 23 O -0.16 -1.49 10.40 5.01 0.05 -1.44 16 24 C -0.12 -1.81 5.49 -26.73 -0.15 -1.96 16 25 C -0.13 -2.33 5.50 -26.73 -0.15 -2.47 16 26 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 27 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.40 3.58 8.36 -40.82 -0.34 3.23 16 33 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -33.76 326.08 -7.10 -40.86 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.63 Total: 8.19 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.05 Total: -6.78 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.23 Total: -54.86 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.14 Total: -9.85 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.76 -7.10 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034580691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.269 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds