Wall clock time and date at job start Tue Mar 31 2020 00:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47158 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.47014 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.47268 * 150.00125 * 3 2 1 7 7 C 1.38812 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99522 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00539 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00214 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47343 * 35.00504 * 10 9 7 12 12 C 1.53001 * 109.47237 * 155.00528 * 10 9 7 13 13 C 1.52994 * 109.47381 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47365 * 299.99782 * 13 12 10 15 15 H 1.08993 * 109.47076 * 300.00269 * 14 13 12 16 16 N 1.46497 * 109.47409 * 179.97438 * 14 13 12 17 17 C 1.34776 * 120.00189 * 155.00341 * 16 14 13 18 18 O 1.21691 * 119.99732 * 359.97438 * 17 16 14 19 19 C 1.46655 * 119.99774 * 180.02562 * 17 16 14 20 20 C 1.36544 * 125.98440 * 179.97438 * 19 17 16 21 21 C 1.40365 * 106.70793 * 179.97438 * 20 19 17 22 22 C 1.35130 * 107.11495 * 0.02562 * 21 20 19 23 23 O 1.33929 * 108.76540 * 0.26561 * 22 21 20 24 24 C 1.53001 * 109.46693 * 59.99797 * 14 13 12 25 25 C 1.52994 * 109.47381 * 300.00193 * 24 14 13 26 26 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00086 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47399 * 59.99619 * 12 10 9 29 29 H 1.09002 * 109.47024 * 300.00187 * 12 10 9 30 30 H 1.09000 * 109.47483 * 179.97438 * 13 12 10 31 31 H 1.09010 * 109.47015 * 59.99944 * 13 12 10 32 32 H 0.97004 * 119.99862 * 335.00224 * 16 14 13 33 33 H 1.08003 * 126.64583 * 0.02562 * 20 19 17 34 34 H 1.08002 * 126.43840 * 180.02562 * 21 20 19 35 35 H 1.08002 * 125.61315 * 179.97438 * 22 21 20 36 36 H 1.08998 * 109.47399 * 60.00540 * 24 14 13 37 37 H 1.09002 * 109.47024 * 179.97438 * 24 14 13 38 38 H 1.09010 * 109.47015 * 300.00055 * 25 24 14 39 39 H 1.09000 * 109.47483 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5647 -3.2065 -0.5902 12 6 5.4992 -2.2589 -0.6112 13 6 6.2644 -3.5837 -0.6106 14 6 6.4111 -4.0874 0.8267 15 1 6.9584 -3.3514 1.4155 16 7 7.1433 -5.3562 0.8272 17 6 7.8264 -5.7397 1.9239 18 8 7.8352 -5.0317 2.9136 19 6 8.5598 -7.0097 1.9241 20 6 9.2890 -7.5149 2.9622 21 6 9.8136 -8.7420 2.5273 22 6 9.3875 -8.9294 1.2587 23 8 8.6374 -7.8806 0.8967 24 6 5.0241 -4.2993 1.4368 25 6 4.2588 -2.9745 1.4362 26 1 -0.4851 0.8400 0.0004 27 1 3.8647 -0.3621 -0.0007 28 1 6.0467 -1.5232 -0.0221 29 1 5.3947 -1.8996 -1.6350 30 1 7.2524 -3.4329 -1.0456 31 1 5.7170 -4.3198 -1.1995 32 1 7.1366 -5.9204 0.0381 33 1 9.4333 -7.0590 3.9306 34 1 10.4400 -9.4106 3.0991 35 1 9.6182 -9.7822 0.6373 36 1 4.4767 -5.0353 0.8480 37 1 5.1285 -4.6586 2.4605 38 1 4.8062 -2.2384 2.0251 39 1 3.2708 -3.1253 1.8712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034580691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:38 Heat of formation + Delta-G solvation = -43.692765 kcal Electronic energy + Delta-G solvation = -21164.335845 eV Core-core repulsion = 17879.396932 eV Total energy + Delta-G solvation = -3284.938913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.62802 -40.99340 -39.31212 -36.55315 -34.77818 -34.00540 -32.96663 -31.72529 -31.04700 -29.09686 -25.56410 -24.26257 -23.60563 -22.72908 -22.21045 -21.43630 -21.03949 -19.78616 -19.23519 -17.41704 -17.32498 -17.25749 -16.77683 -16.23364 -15.77988 -15.46758 -15.06605 -14.94383 -14.62146 -14.39340 -14.19232 -13.95321 -13.69950 -13.52410 -13.39890 -13.12752 -12.91169 -12.44135 -12.35812 -12.07660 -12.01753 -11.79879 -11.52434 -11.35612 -11.23585 -11.04488 -10.89042 -10.23312 -9.63483 -9.29318 -8.01063 -5.33888 0.03119 1.38662 1.41956 1.43759 1.49196 1.65444 2.08999 2.19810 2.49772 3.29770 3.55137 3.69114 3.79240 3.83541 3.96290 4.13114 4.22821 4.29747 4.33417 4.49041 4.56650 4.60199 4.63162 4.82105 4.90569 4.92284 4.96552 5.07056 5.11572 5.21879 5.24912 5.35781 5.40982 5.48667 5.58806 5.79504 5.84836 6.23733 6.43882 7.00806 7.10021 7.87151 8.05957 9.20711 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047711 B = 0.003062 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.721360 B = 9142.421049 C = 9164.271189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.253 1.253 7 C -0.226 4.226 8 H 0.055 0.945 9 N -0.753 5.753 10 C 0.174 3.826 11 H 0.047 0.953 12 C -0.116 4.116 13 C -0.107 4.107 14 C 0.150 3.850 15 H 0.075 0.925 16 N -0.700 5.700 17 C 0.599 3.401 18 O -0.563 6.563 19 C -0.108 4.108 20 C -0.130 4.130 21 C -0.236 4.236 22 C 0.012 3.988 23 O -0.169 6.169 24 C -0.115 4.115 25 C -0.124 4.124 26 H 0.257 0.743 27 H 0.365 0.635 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.417 0.583 33 H 0.155 0.845 34 H 0.182 0.818 35 H 0.257 0.743 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.374 -19.287 -0.719 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.178 1.178 7 C -0.357 4.357 8 H 0.073 0.927 9 N -0.396 5.396 10 C 0.067 3.933 11 H 0.065 0.935 12 C -0.155 4.155 13 C -0.145 4.145 14 C 0.046 3.954 15 H 0.094 0.906 16 N -0.350 5.350 17 C 0.386 3.614 18 O -0.444 6.444 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.255 4.255 22 C -0.057 4.057 23 O -0.064 6.064 24 C -0.154 4.154 25 C -0.165 4.165 26 H 0.065 0.935 27 H 0.198 0.802 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.255 0.745 33 H 0.173 0.827 34 H 0.200 0.800 35 H 0.272 0.728 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 24.006 -18.791 -0.347 30.488 hybrid contribution -0.290 0.933 0.312 1.026 sum 23.716 -17.858 -0.035 29.687 Atomic orbital electron populations 1.69888 1.07168 1.26578 1.60109 1.25516 0.96119 1.01305 1.02974 0.85393 0.78542 0.79583 0.78156 1.20147 1.22621 1.17780 1.19035 0.82750 0.93301 1.40618 0.92654 1.42835 1.02413 1.04113 1.90199 1.20480 0.92134 0.86969 0.93752 0.93467 1.21694 0.94258 0.97805 1.01722 1.21665 1.01879 0.97023 0.93969 1.21003 0.91350 0.84648 0.98368 0.90639 1.45875 1.49879 1.23205 1.16032 1.16829 0.78172 0.82984 0.83384 1.90872 1.64616 1.54135 1.34780 1.21804 1.09742 0.94669 0.89777 1.22269 0.96711 0.96467 0.99611 1.22223 1.07245 0.98630 0.97380 1.25403 0.92356 0.90775 0.97181 1.84055 1.57068 1.27304 1.37979 1.21782 0.95521 0.97530 1.00591 1.22014 0.98756 0.96352 0.99394 0.93455 0.80204 0.91702 0.90441 0.88874 0.89630 0.74543 0.82727 0.80027 0.72767 0.90952 0.93233 0.93097 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.21 13.97 21.65 0.30 -63.91 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.96 46.15 27.73 68.60 1.90 48.05 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 6 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 7 C -0.23 -12.98 10.41 84.03 0.87 -12.11 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 N -0.75 -35.09 4.92 -322.95 -1.59 -36.68 16 10 C 0.17 6.40 2.77 44.99 0.12 6.53 16 11 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 12 C -0.12 -3.15 5.39 30.59 0.16 -2.98 16 13 C -0.11 -2.16 5.39 30.59 0.16 -1.99 16 14 C 0.15 3.63 2.46 44.99 0.11 3.74 16 15 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16 16 N -0.70 -14.63 5.07 -446.54 -2.26 -16.90 16 17 C 0.60 15.36 7.75 86.44 0.67 16.03 16 18 O -0.56 -18.86 16.53 -4.32 -0.07 -18.93 16 19 C -0.11 -2.26 7.13 24.07 0.17 -2.09 16 20 C -0.13 -2.42 10.62 22.39 0.24 -2.18 16 21 C -0.24 -2.69 10.87 22.07 0.24 -2.45 16 22 C 0.01 0.11 12.08 67.10 0.81 0.92 16 23 O -0.17 -2.61 10.40 -5.00 -0.05 -2.67 16 24 C -0.11 -3.31 5.49 30.59 0.17 -3.14 16 25 C -0.12 -4.44 5.50 30.59 0.17 -4.28 16 26 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 27 H 0.36 16.30 5.66 -92.71 -0.52 15.78 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.42 6.34 8.36 -92.71 -0.77 5.57 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.26 -0.39 8.06 -2.91 -0.02 -0.41 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.71 326.08 2.30 -74.41 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.29 Total: 24.24 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.37 Total: -7.63 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -3.55 Total: -117.48 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.12 Total: -21.60 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.05 kcal Total: -76.71 2.30 -74.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034580691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.715 kcal (2) G-P(sol) polarization free energy of solvation -76.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds