Wall clock time and date at job start Tue Mar 31 2020 00:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48500 * 109.46888 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47039 * 299.99676 * 3 2 1 6 6 H 1.48499 * 109.47147 * 59.99943 * 3 2 1 7 7 C 1.38810 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99763 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00258 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46948 * 324.99330 * 10 9 7 12 12 C 1.52998 * 109.47391 * 84.99458 * 10 9 7 13 13 C 1.52998 * 109.47164 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47178 * 300.00289 * 13 12 10 15 15 H 1.09000 * 109.47521 * 299.99961 * 14 13 12 16 16 N 1.46505 * 109.47130 * 179.97438 * 14 13 12 17 17 C 1.34777 * 119.99724 * 85.00158 * 16 14 13 18 18 O 1.21613 * 120.00252 * 359.97438 * 17 16 14 19 19 C 1.47373 * 119.99556 * 179.72665 * 17 16 14 20 20 C 1.47025 * 127.19208 * 179.97438 * 19 17 16 21 21 C 1.34177 * 105.95459 * 179.88636 * 20 19 17 22 22 O 1.34218 * 109.12572 * 0.38111 * 21 20 19 23 23 C 1.33649 * 110.90413 * 359.74431 * 22 21 20 24 24 C 1.52998 * 109.47309 * 59.99800 * 14 13 12 25 25 C 1.52996 * 109.47098 * 204.99837 * 10 9 7 26 26 H 0.97004 * 119.99827 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99893 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.46999 * 300.00238 * 12 10 9 29 29 H 1.09008 * 109.46859 * 60.00334 * 12 10 9 30 30 H 1.08998 * 109.47238 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47096 * 59.99921 * 13 12 10 32 32 H 0.97000 * 119.99792 * 264.99726 * 16 14 13 33 33 H 1.07997 * 127.02120 * 0.04005 * 20 19 17 34 34 H 1.08001 * 125.43399 * 180.10190 * 21 20 19 35 35 H 1.08009 * 125.79823 * 180.02562 * 23 22 21 36 36 H 1.09002 * 109.47179 * 60.00237 * 24 14 13 37 37 H 1.09006 * 109.47312 * 179.97438 * 24 14 13 38 38 H 1.09002 * 109.47550 * 59.99423 * 25 10 9 39 39 H 1.09000 * 109.47521 * 299.99731 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9692 -3.5508 -0.5872 12 6 2.4210 -4.0349 1.4391 13 6 3.1865 -5.3596 1.4401 14 6 2.3103 -6.4555 0.8302 15 1 1.3992 -6.5620 1.4188 16 7 3.0436 -7.7239 0.8306 17 6 3.0346 -8.5070 1.9275 18 8 2.4183 -8.1605 2.9170 19 6 3.7673 -9.7857 1.9259 20 6 3.8645 -10.7557 3.0264 21 6 4.6272 -11.7595 2.5670 22 8 5.0030 -11.4856 1.3080 23 6 4.5020 -10.3139 0.9050 24 6 1.9474 -6.0774 -0.6072 25 6 1.1814 -4.7524 -0.6081 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3881 0.0005 28 1 3.0456 -3.2544 1.8734 29 1 1.5098 -4.1410 2.0279 30 1 3.4447 -5.6293 2.4642 31 1 4.0977 -5.2532 0.8514 32 1 3.5354 -8.0000 0.0415 33 1 3.4121 -10.6775 4.0040 34 1 4.8993 -12.6443 3.1234 35 1 4.6528 -9.8622 -0.0644 36 1 2.8585 -5.9709 -1.1960 37 1 1.3235 -6.8584 -1.0420 38 1 0.9228 -4.4830 -1.6322 39 1 0.2702 -4.8584 -0.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034593944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:13 Heat of formation + Delta-G solvation = -24.632030 kcal Electronic energy + Delta-G solvation = -21054.166565 eV Core-core repulsion = 17770.054187 eV Total energy + Delta-G solvation = -3284.112378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -42.83892 -39.82484 -37.86841 -34.86201 -33.38083 -32.80586 -30.85647 -30.39829 -29.90190 -27.33896 -24.26168 -23.20017 -22.31269 -21.78817 -21.00251 -20.25184 -19.50196 -18.56131 -17.03308 -16.45564 -16.34745 -16.13913 -15.24284 -14.96292 -14.76689 -14.05448 -13.76745 -13.61957 -13.54062 -13.21408 -13.01125 -12.78227 -12.48602 -12.02123 -11.80240 -11.43319 -11.04911 -10.82499 -10.76055 -10.66627 -10.15764 -10.12315 -10.08705 -10.02292 -9.74615 -9.58070 -9.18269 -8.96115 -8.83798 -6.92326 -5.74115 -3.02477 1.06319 1.78809 2.58330 3.05721 3.25039 3.44631 3.50229 3.52451 4.25840 4.38691 4.60760 4.74874 4.90971 5.04820 5.20605 5.28285 5.35564 5.52757 5.57092 5.62204 5.69014 5.73670 5.86171 5.88666 5.96047 6.04604 6.24622 6.26660 6.31112 6.49521 6.57865 6.60617 6.66358 6.74428 7.00644 7.16937 7.43454 7.72967 8.15896 8.44831 9.55793 10.14588 10.49030 11.48766 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046360 B = 0.002915 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.824882 B = 9601.970543 C = 9678.183338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.146 3.854 15 H 0.089 0.911 16 N -0.722 5.722 17 C 0.583 3.417 18 O -0.533 6.533 19 C -0.231 4.231 20 C -0.165 4.165 21 C -0.043 4.043 22 O -0.176 6.176 23 C 0.017 3.983 24 C -0.119 4.119 25 C -0.121 4.121 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.394 0.606 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.211 0.789 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -24.142 0.193 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.043 3.957 15 H 0.107 0.893 16 N -0.372 5.372 17 C 0.370 3.630 18 O -0.410 6.410 19 C -0.236 4.236 20 C -0.185 4.185 21 C -0.108 4.108 22 O -0.071 6.071 23 C -0.053 4.053 24 C -0.157 4.157 25 C -0.159 4.159 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.177 0.823 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.147 -23.912 0.730 25.613 hybrid contribution 0.299 0.944 -0.131 0.999 sum 9.446 -22.968 0.598 24.842 Atomic orbital electron populations 1.69674 1.05091 1.25466 1.57970 1.24742 0.95509 0.97664 1.03214 0.86142 0.78780 0.84281 0.77159 1.20591 1.21926 1.21917 1.19286 0.90989 0.84153 1.42249 0.91184 1.42442 1.05805 0.99814 1.88541 1.20238 0.94276 0.85968 0.92779 0.93609 1.22228 0.99796 0.94482 1.00826 1.21902 0.98560 0.95357 1.00495 1.21142 0.95481 0.81506 0.97608 0.89300 1.46020 1.53438 1.22081 1.15661 1.17280 0.80117 0.82346 0.83234 1.90809 1.43429 1.73657 1.33150 1.21654 1.06895 0.98792 0.96233 1.22828 1.02171 0.93252 1.00250 1.23957 1.01826 1.01780 0.83281 1.83790 1.59748 1.34458 1.29087 1.24453 0.96170 0.85116 0.99583 1.21762 1.00843 0.98343 0.94768 1.21762 0.98960 0.93414 1.01803 0.93608 0.78305 0.91786 0.92453 0.92328 0.92301 0.77212 0.82282 0.77481 0.77249 0.91558 0.91846 0.91326 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.16 5.12 -53.43 -0.27 -18.43 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.43 5.50 -26.73 -0.15 -2.57 16 13 C -0.12 -1.86 5.49 -26.73 -0.15 -2.00 16 14 C 0.15 1.94 2.45 -67.93 -0.17 1.77 16 15 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 16 N -0.72 -7.85 5.07 -54.90 -0.28 -8.13 16 17 C 0.58 7.70 7.78 -12.54 -0.10 7.60 16 18 O -0.53 -9.37 16.65 5.27 0.09 -9.28 16 19 C -0.23 -2.42 6.31 -103.28 -0.65 -3.07 16 20 C -0.17 -1.57 11.01 -37.45 -0.41 -1.98 16 21 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 22 O -0.18 -1.36 10.52 7.65 0.08 -1.28 16 23 C 0.02 0.12 11.61 30.08 0.35 0.47 16 24 C -0.12 -1.43 5.39 -26.71 -0.14 -1.58 16 25 C -0.12 -1.91 5.39 -26.71 -0.14 -2.05 16 26 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.38 10.22 7.80 -40.82 -0.32 9.91 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.39 2.87 7.57 -40.82 -0.31 2.56 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.21 0.67 7.47 -52.48 -0.39 0.28 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -34.52 328.36 -6.98 -41.50 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.61 Total: 8.17 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.64 Total: -7.33 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.17 Total: -54.24 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.17 Total: -10.56 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.52 -6.98 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034593944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.869 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds