Wall clock time and date at job start Tue Mar 31 2020 00:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48500 * 109.46888 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47039 * 299.99676 * 3 2 1 6 6 H 1.48499 * 109.47147 * 59.99943 * 3 2 1 7 7 C 1.38810 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99763 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00258 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46948 * 324.99330 * 10 9 7 12 12 C 1.52998 * 109.47391 * 84.99458 * 10 9 7 13 13 C 1.52998 * 109.47164 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47178 * 300.00289 * 13 12 10 15 15 H 1.09000 * 109.47521 * 299.99961 * 14 13 12 16 16 N 1.46505 * 109.47130 * 179.97438 * 14 13 12 17 17 C 1.34777 * 119.99724 * 85.00158 * 16 14 13 18 18 O 1.21613 * 120.00252 * 359.97438 * 17 16 14 19 19 C 1.47373 * 119.99556 * 179.72665 * 17 16 14 20 20 C 1.47025 * 127.19208 * 179.97438 * 19 17 16 21 21 C 1.34177 * 105.95459 * 179.88636 * 20 19 17 22 22 O 1.34218 * 109.12572 * 0.38111 * 21 20 19 23 23 C 1.33649 * 110.90413 * 359.74431 * 22 21 20 24 24 C 1.52998 * 109.47309 * 59.99800 * 14 13 12 25 25 C 1.52996 * 109.47098 * 204.99837 * 10 9 7 26 26 H 0.97004 * 119.99827 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99893 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.46999 * 300.00238 * 12 10 9 29 29 H 1.09008 * 109.46859 * 60.00334 * 12 10 9 30 30 H 1.08998 * 109.47238 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47096 * 59.99921 * 13 12 10 32 32 H 0.97000 * 119.99792 * 264.99726 * 16 14 13 33 33 H 1.07997 * 127.02120 * 0.04005 * 20 19 17 34 34 H 1.08001 * 125.43399 * 180.10190 * 21 20 19 35 35 H 1.08009 * 125.79823 * 180.02562 * 23 22 21 36 36 H 1.09002 * 109.47179 * 60.00237 * 24 14 13 37 37 H 1.09006 * 109.47312 * 179.97438 * 24 14 13 38 38 H 1.09002 * 109.47550 * 59.99423 * 25 10 9 39 39 H 1.09000 * 109.47521 * 299.99731 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9692 -3.5508 -0.5872 12 6 2.4210 -4.0349 1.4391 13 6 3.1865 -5.3596 1.4401 14 6 2.3103 -6.4555 0.8302 15 1 1.3992 -6.5620 1.4188 16 7 3.0436 -7.7239 0.8306 17 6 3.0346 -8.5070 1.9275 18 8 2.4183 -8.1605 2.9170 19 6 3.7673 -9.7857 1.9259 20 6 3.8645 -10.7557 3.0264 21 6 4.6272 -11.7595 2.5670 22 8 5.0030 -11.4856 1.3080 23 6 4.5020 -10.3139 0.9050 24 6 1.9474 -6.0774 -0.6072 25 6 1.1814 -4.7524 -0.6081 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3881 0.0005 28 1 3.0456 -3.2544 1.8734 29 1 1.5098 -4.1410 2.0279 30 1 3.4447 -5.6293 2.4642 31 1 4.0977 -5.2532 0.8514 32 1 3.5354 -8.0000 0.0415 33 1 3.4121 -10.6775 4.0040 34 1 4.8993 -12.6443 3.1234 35 1 4.6528 -9.8622 -0.0644 36 1 2.8585 -5.9709 -1.1960 37 1 1.3235 -6.8584 -1.0420 38 1 0.9228 -4.4830 -1.6322 39 1 0.2702 -4.8584 -0.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034593944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:12 Heat of formation + Delta-G solvation = -49.362346 kcal Electronic energy + Delta-G solvation = -21055.238952 eV Core-core repulsion = 17770.054187 eV Total energy + Delta-G solvation = -3285.184765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44457 -40.91311 -39.18703 -36.37728 -34.75465 -33.78031 -32.44949 -31.68984 -30.77192 -28.82311 -25.79778 -24.54393 -23.59199 -22.46051 -22.22313 -21.27364 -20.74202 -19.43022 -18.95776 -17.29112 -17.19409 -17.06898 -16.76585 -16.02203 -15.80718 -15.56009 -15.35626 -15.05830 -14.63195 -14.53796 -13.99504 -13.83638 -13.51970 -13.29493 -13.13128 -13.08898 -12.86004 -12.42910 -12.31299 -12.10298 -12.02906 -11.67091 -11.47689 -11.21567 -11.09163 -10.86164 -10.81834 -10.09130 -9.70418 -8.99079 -7.93267 -5.21306 0.39221 1.14766 1.46822 1.47916 1.57599 2.01049 2.18935 2.34510 2.56923 3.39798 3.62881 3.76037 3.80536 3.84747 3.90160 4.16554 4.29164 4.37424 4.40131 4.50592 4.59339 4.60691 4.66045 4.77975 4.87124 5.00607 5.04601 5.12520 5.13846 5.25668 5.28032 5.33345 5.46426 5.53197 5.55755 5.64135 6.01438 6.29825 6.57889 7.24116 7.35062 8.12956 8.35005 9.30753 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046360 B = 0.002915 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.824882 B = 9601.970543 C = 9678.183338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.124 4.124 13 C -0.112 4.112 14 C 0.153 3.847 15 H 0.061 0.939 16 N -0.703 5.703 17 C 0.581 3.419 18 O -0.591 6.591 19 C -0.272 4.272 20 C -0.203 4.203 21 C -0.022 4.022 22 O -0.176 6.176 23 C 0.049 3.951 24 C -0.104 4.104 25 C -0.114 4.114 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.417 0.583 33 H 0.149 0.851 34 H 0.246 0.754 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -26.329 -1.665 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.151 4.151 14 C 0.048 3.952 15 H 0.080 0.920 16 N -0.354 5.354 17 C 0.371 3.629 18 O -0.472 6.472 19 C -0.277 4.277 20 C -0.223 4.223 21 C -0.087 4.087 22 O -0.071 6.071 23 C -0.021 4.021 24 C -0.142 4.142 25 C -0.153 4.153 26 H 0.058 0.942 27 H 0.202 0.798 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.254 0.746 33 H 0.166 0.834 34 H 0.262 0.738 35 H 0.270 0.730 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.632 -26.158 -1.167 28.652 hybrid contribution -0.409 1.524 0.470 1.646 sum 11.223 -24.634 -0.697 27.079 Atomic orbital electron populations 1.69830 1.06625 1.25829 1.60041 1.25557 0.96371 1.01080 1.04210 0.85108 0.78321 0.80037 0.76549 1.18930 1.21954 1.22459 1.19666 0.91407 0.85282 1.40208 0.90622 1.42698 1.05466 1.01196 1.88532 1.20494 0.94637 0.84999 0.93394 0.93151 1.22039 0.98912 0.95877 0.99618 1.21765 0.99109 0.93903 1.00363 1.20865 0.94288 0.82009 0.98014 0.92034 1.45722 1.52913 1.20705 1.16079 1.17726 0.79377 0.83153 0.82670 1.90779 1.46045 1.75094 1.35302 1.21545 1.09359 0.98456 0.98307 1.22968 1.04251 0.94695 1.00402 1.24561 0.99695 1.01746 0.82738 1.83847 1.59442 1.34449 1.29318 1.25143 0.93122 0.84002 0.99847 1.21663 1.01941 0.96595 0.94027 1.21655 0.98344 0.94193 1.01099 0.94159 0.79758 0.94104 0.94473 0.93788 0.90204 0.74562 0.83360 0.73786 0.73048 0.88906 0.89159 0.91207 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 7 C -0.23 -13.07 9.93 84.03 0.83 -12.24 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -37.66 5.12 -322.95 -1.65 -39.31 16 10 C 0.17 6.67 2.77 44.99 0.12 6.79 16 11 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 12 C -0.12 -4.62 5.50 30.59 0.17 -4.45 16 13 C -0.11 -3.28 5.49 30.59 0.17 -3.11 16 14 C 0.15 3.84 2.45 44.99 0.11 3.96 16 15 H 0.06 1.93 7.58 -2.39 -0.02 1.92 16 16 N -0.70 -13.66 5.07 -445.85 -2.26 -15.92 16 17 C 0.58 15.01 7.78 86.65 0.67 15.68 16 18 O -0.59 -21.61 16.65 -4.07 -0.07 -21.68 16 19 C -0.27 -5.28 6.31 -18.99 -0.12 -5.40 16 20 C -0.20 -3.72 11.01 23.65 0.26 -3.46 16 21 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 22 O -0.18 -2.05 10.52 4.47 0.05 -2.01 16 23 C 0.05 0.53 11.61 67.39 0.78 1.31 16 24 C -0.10 -2.19 5.39 30.61 0.17 -2.02 16 25 C -0.11 -3.48 5.39 30.61 0.17 -3.32 16 26 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.37 20.43 7.80 -92.70 -0.72 19.70 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.42 4.27 7.57 -92.71 -0.70 3.57 16 33 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.25 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.25 0.17 7.47 -2.91 -0.02 0.15 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -78.86 328.36 2.62 -76.24 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.36 Total: 24.06 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 4.60 Total: -9.91 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.63 Total: -115.51 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.02 Total: -23.68 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -78.86 2.62 -76.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034593944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.876 kcal (2) G-P(sol) polarization free energy of solvation -78.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds