Wall clock time and date at job start Tue Mar 31 2020 00:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99596 * 2 1 4 4 H 1.48502 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.46984 * 300.00145 * 3 2 1 6 6 H 1.48503 * 109.47048 * 60.00202 * 3 2 1 7 7 C 1.38812 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99797 * 160.12555 * 7 2 1 9 9 N 1.36933 * 119.99662 * 340.40404 * 7 2 1 10 10 C 1.50161 * 120.54232 * 336.77120 * 9 7 2 11 11 C 1.46234 * 107.53568 * 109.56217 * 10 9 7 12 12 C 1.52526 * 114.27540 * 58.41202 * 11 10 9 13 13 C 1.50118 * 105.41474 * 270.59164 * 12 11 10 14 14 H 1.08997 * 109.21091 * 337.34077 * 13 12 11 15 15 N 1.46500 * 109.21075 * 218.02421 * 13 12 11 16 16 C 1.34780 * 119.99926 * 154.99436 * 15 13 12 17 17 O 1.21609 * 120.00291 * 0.02562 * 16 15 13 18 18 C 1.47380 * 119.99641 * 179.97438 * 16 15 13 19 19 C 1.47022 * 127.18984 * 180.02562 * 18 16 15 20 20 C 1.34173 * 105.95816 * 180.02562 * 19 18 16 21 21 O 1.34217 * 109.12218 * 359.97438 * 20 19 18 22 22 C 1.33655 * 110.90587 * 359.72879 * 21 20 19 23 23 C 1.54847 * 110.81882 * 97.68252 * 13 12 11 24 24 C 1.43435 * 120.53365 * 156.49129 * 9 7 2 25 25 H 0.96994 * 120.00665 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.84926 * 229.07600 * 10 9 7 27 27 H 1.09009 * 109.84412 * 350.05795 * 10 9 7 28 28 H 1.09007 * 108.52366 * 179.65249 * 11 10 9 29 29 H 1.08992 * 108.52561 * 297.32712 * 11 10 9 30 30 H 1.09004 * 110.24778 * 29.56799 * 12 11 10 31 31 H 1.09000 * 110.25053 * 151.47376 * 12 11 10 32 32 H 0.96996 * 120.00390 * 335.00424 * 15 13 12 33 33 H 1.08009 * 127.02425 * 0.03068 * 19 18 16 34 34 H 1.07997 * 125.44166 * 180.02562 * 20 19 18 35 35 H 1.08002 * 125.80416 * 180.28412 * 22 21 20 36 36 H 1.09000 * 109.35725 * 81.33320 * 23 13 12 37 37 H 1.08995 * 109.36320 * 200.92675 * 23 13 12 38 38 H 1.08999 * 108.16170 * 33.30231 * 24 9 7 39 39 H 1.09000 * 108.16469 * 149.87252 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0421 -1.2300 -0.3174 9 7 1.3852 -2.3535 0.3988 10 6 0.1855 -2.2978 1.3002 11 6 -0.9804 -2.6838 0.5064 12 6 -0.8817 -4.0716 -0.1188 13 6 -0.2301 -3.8620 -1.4548 14 1 -0.3811 -2.8294 -1.7694 15 7 -0.8446 -4.7588 -2.4368 16 6 -0.8200 -4.4422 -3.7467 17 8 -0.2873 -3.4123 -4.1135 18 6 -1.4377 -5.3447 -4.7346 19 6 -1.5017 -5.1574 -6.1914 20 6 -2.1543 -6.2265 -6.6725 21 8 -2.4867 -7.0340 -5.6532 22 6 -2.0641 -6.5314 -4.4892 23 6 1.2886 -4.1543 -1.3784 24 6 1.8621 -3.6320 -0.0432 25 1 -0.4851 0.8399 0.0004 26 1 0.3141 -2.9920 2.1307 27 1 0.0551 -1.2846 1.6806 28 1 -1.8612 -2.6549 1.1480 29 1 -1.1117 -1.9549 -0.2932 30 1 -0.2669 -4.7226 0.5029 31 1 -1.8760 -4.5003 -0.2446 32 1 -1.2693 -5.5804 -2.1444 33 1 -1.1043 -4.3286 -6.7587 34 1 -2.3760 -6.4086 -7.7136 35 1 -2.1986 -6.9858 -3.5187 36 1 1.4535 -5.2295 -1.4481 37 1 1.7941 -3.6586 -2.2071 38 1 2.9458 -3.5739 -0.1443 39 1 1.6374 -4.3649 0.7317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052203963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:43 Heat of formation + Delta-G solvation = 9.487258 kcal Electronic energy + Delta-G solvation = -22123.498309 eV Core-core repulsion = 18840.865455 eV Total energy + Delta-G solvation = -3282.632854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.59667 -39.38658 -37.55202 -34.57747 -32.98671 -32.16447 -31.55693 -30.36496 -29.27612 -26.16644 -24.30622 -23.68464 -22.36247 -21.51756 -20.30001 -19.69352 -19.10202 -18.19615 -16.66299 -16.22339 -16.03025 -15.46278 -15.03017 -14.81435 -14.44922 -13.87833 -13.72159 -13.38504 -13.16020 -12.98430 -12.54387 -12.37212 -12.18835 -11.79660 -11.44540 -11.22561 -10.76062 -10.60069 -10.32192 -10.21293 -10.01726 -9.84483 -9.74642 -9.50389 -9.45504 -9.31233 -8.93016 -8.54525 -8.32063 -6.66551 -5.73232 -3.11832 1.33564 2.03816 2.80740 3.43285 3.51788 3.52493 3.53898 3.64011 4.49357 4.57619 4.67413 5.05292 5.36640 5.43582 5.46415 5.58496 5.59137 5.73307 5.84401 5.90311 6.03705 6.20241 6.29197 6.34268 6.43146 6.50900 6.73376 6.83501 6.90431 6.93167 6.96640 7.06397 7.17899 7.24726 7.62258 7.80526 7.90875 8.01394 8.48662 8.61650 9.25195 9.92572 10.44642 11.34604 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.004515 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.359660 B = 6199.909379 C = 6700.305845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.156 3.844 14 H 0.103 0.897 15 N -0.724 5.724 16 C 0.575 3.425 17 O -0.526 6.526 18 C -0.224 4.224 19 C -0.165 4.165 20 C -0.046 4.046 21 O -0.178 6.178 22 C 0.010 3.990 23 C -0.151 4.151 24 C 0.161 3.839 25 H 0.252 0.748 26 H 0.006 0.994 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.387 0.613 33 H 0.159 0.841 34 H 0.207 0.793 35 H 0.210 0.790 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -14.861 -6.247 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.054 3.946 14 H 0.121 0.879 15 N -0.375 5.375 16 C 0.361 3.639 17 O -0.403 6.403 18 C -0.229 4.229 19 C -0.185 4.185 20 C -0.112 4.112 21 O -0.074 6.074 22 C -0.060 4.060 23 C -0.193 4.193 24 C 0.032 3.968 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.220 0.780 33 H 0.176 0.824 34 H 0.224 0.776 35 H 0.226 0.774 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.984 -14.183 -6.514 16.716 hybrid contribution 0.203 0.605 -0.131 0.651 sum -5.781 -13.579 -6.645 16.185 Atomic orbital electron populations 1.69963 1.05094 1.25103 1.54381 1.24883 0.95218 0.98217 1.01158 0.86262 0.79432 0.84229 0.77108 1.20411 1.21887 1.21720 1.19255 0.93760 0.85285 1.39477 0.91416 1.44304 1.33723 1.00915 1.51995 1.20165 0.85205 1.00572 0.89893 1.20940 0.98490 0.94996 1.02469 1.21365 0.98690 0.99835 0.96030 1.21305 0.92114 0.94889 0.86333 0.87879 1.46389 1.59101 1.25513 1.06456 1.17312 0.79504 0.85102 0.81956 1.90843 1.44438 1.25338 1.79650 1.21796 1.08043 0.97831 0.95188 1.22847 1.02781 1.00362 0.92476 1.23905 1.03351 0.91446 0.92517 1.83765 1.62853 1.45891 1.14852 1.24404 0.98194 0.94320 0.89094 1.23233 0.95317 0.98540 1.02239 1.20257 0.96454 0.88253 0.91862 0.93831 0.97564 0.89110 0.95142 0.87899 0.91845 0.92855 0.77979 0.82356 0.77620 0.77382 0.93670 0.92476 0.94879 0.95352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 9.43 55.49 0.52 -24.84 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 22.09 29.60 -169.99 -5.03 17.06 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.25 -6.83 9.62 -15.06 -0.14 -6.98 16 8 H 0.07 1.88 7.89 -52.49 -0.41 1.46 16 9 N -0.59 -14.48 2.61 -175.40 -0.46 -14.93 16 10 C 0.17 3.80 5.25 -5.21 -0.03 3.77 16 11 C -0.13 -2.74 5.02 -30.19 -0.15 -2.89 16 12 C -0.12 -2.11 5.33 -28.41 -0.15 -2.26 16 13 C 0.16 3.01 2.22 -68.39 -0.15 2.86 16 14 H 0.10 2.58 6.26 -51.93 -0.33 2.25 16 15 N -0.72 -11.39 4.97 -55.35 -0.27 -11.66 16 16 C 0.58 10.25 7.76 -12.54 -0.10 10.15 16 17 O -0.53 -12.12 16.65 5.27 0.09 -12.03 16 18 C -0.22 -3.12 6.31 -103.28 -0.65 -3.77 16 19 C -0.17 -2.07 11.01 -37.46 -0.41 -2.48 16 20 C -0.05 -0.44 12.03 29.30 0.35 -0.08 16 21 O -0.18 -1.81 10.52 7.64 0.08 -1.73 16 22 C 0.01 0.10 11.61 30.07 0.35 0.45 16 23 C -0.15 -2.99 5.97 -25.02 -0.15 -3.14 16 24 C 0.16 3.41 5.13 -4.92 -0.03 3.38 16 25 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 27 H 0.09 2.35 6.05 -51.92 -0.31 2.03 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.10 2.59 5.29 -51.93 -0.27 2.31 16 30 H 0.06 1.05 6.28 -51.93 -0.33 0.72 16 31 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 32 H 0.39 4.46 7.45 -40.82 -0.30 4.15 16 33 H 0.16 1.95 8.06 -52.48 -0.42 1.52 16 34 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.21 1.27 7.47 -52.49 -0.39 0.88 16 36 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 39 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -32.94 313.67 -6.89 -39.83 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.20 Total: 4.55 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.35 Total: -0.98 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.21 Total: -51.44 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.17 Total: -13.76 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.94 -6.89 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052203963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.320 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds