Wall clock time and date at job start Tue Mar 31 2020 00:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99596 * 2 1 4 4 H 1.48502 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.46984 * 300.00145 * 3 2 1 6 6 H 1.48503 * 109.47048 * 60.00202 * 3 2 1 7 7 C 1.38812 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99797 * 160.12555 * 7 2 1 9 9 N 1.36933 * 119.99662 * 340.40404 * 7 2 1 10 10 C 1.50161 * 120.54232 * 336.77120 * 9 7 2 11 11 C 1.46234 * 107.53568 * 109.56217 * 10 9 7 12 12 C 1.52526 * 114.27540 * 58.41202 * 11 10 9 13 13 C 1.50118 * 105.41474 * 270.59164 * 12 11 10 14 14 H 1.08997 * 109.21091 * 337.34077 * 13 12 11 15 15 N 1.46500 * 109.21075 * 218.02421 * 13 12 11 16 16 C 1.34780 * 119.99926 * 154.99436 * 15 13 12 17 17 O 1.21609 * 120.00291 * 0.02562 * 16 15 13 18 18 C 1.47380 * 119.99641 * 179.97438 * 16 15 13 19 19 C 1.47022 * 127.18984 * 180.02562 * 18 16 15 20 20 C 1.34173 * 105.95816 * 180.02562 * 19 18 16 21 21 O 1.34217 * 109.12218 * 359.97438 * 20 19 18 22 22 C 1.33655 * 110.90587 * 359.72879 * 21 20 19 23 23 C 1.54847 * 110.81882 * 97.68252 * 13 12 11 24 24 C 1.43435 * 120.53365 * 156.49129 * 9 7 2 25 25 H 0.96994 * 120.00665 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.84926 * 229.07600 * 10 9 7 27 27 H 1.09009 * 109.84412 * 350.05795 * 10 9 7 28 28 H 1.09007 * 108.52366 * 179.65249 * 11 10 9 29 29 H 1.08992 * 108.52561 * 297.32712 * 11 10 9 30 30 H 1.09004 * 110.24778 * 29.56799 * 12 11 10 31 31 H 1.09000 * 110.25053 * 151.47376 * 12 11 10 32 32 H 0.96996 * 120.00390 * 335.00424 * 15 13 12 33 33 H 1.08009 * 127.02425 * 0.03068 * 19 18 16 34 34 H 1.07997 * 125.44166 * 180.02562 * 20 19 18 35 35 H 1.08002 * 125.80416 * 180.28412 * 22 21 20 36 36 H 1.09000 * 109.35725 * 81.33320 * 23 13 12 37 37 H 1.08995 * 109.36320 * 200.92675 * 23 13 12 38 38 H 1.08999 * 108.16170 * 33.30231 * 24 9 7 39 39 H 1.09000 * 108.16469 * 149.87252 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0421 -1.2300 -0.3174 9 7 1.3852 -2.3535 0.3988 10 6 0.1855 -2.2978 1.3002 11 6 -0.9804 -2.6838 0.5064 12 6 -0.8817 -4.0716 -0.1188 13 6 -0.2301 -3.8620 -1.4548 14 1 -0.3811 -2.8294 -1.7694 15 7 -0.8446 -4.7588 -2.4368 16 6 -0.8200 -4.4422 -3.7467 17 8 -0.2873 -3.4123 -4.1135 18 6 -1.4377 -5.3447 -4.7346 19 6 -1.5017 -5.1574 -6.1914 20 6 -2.1543 -6.2265 -6.6725 21 8 -2.4867 -7.0340 -5.6532 22 6 -2.0641 -6.5314 -4.4892 23 6 1.2886 -4.1543 -1.3784 24 6 1.8621 -3.6320 -0.0432 25 1 -0.4851 0.8399 0.0004 26 1 0.3141 -2.9920 2.1307 27 1 0.0551 -1.2846 1.6806 28 1 -1.8612 -2.6549 1.1480 29 1 -1.1117 -1.9549 -0.2932 30 1 -0.2669 -4.7226 0.5029 31 1 -1.8760 -4.5003 -0.2446 32 1 -1.2693 -5.5804 -2.1444 33 1 -1.1043 -4.3286 -6.7587 34 1 -2.3760 -6.4086 -7.7136 35 1 -2.1986 -6.9858 -3.5187 36 1 1.4535 -5.2295 -1.4481 37 1 1.7941 -3.6586 -2.2071 38 1 2.9458 -3.5739 -0.1443 39 1 1.6374 -4.3649 0.7317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052203963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:42 Heat of formation + Delta-G solvation = -13.663095 kcal Electronic energy + Delta-G solvation = -22124.502184 eV Core-core repulsion = 18840.865455 eV Total energy + Delta-G solvation = -3283.636729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.44903 -40.86055 -39.20083 -36.26421 -34.27368 -33.62082 -33.33070 -31.83678 -30.44599 -27.97852 -25.82357 -25.37007 -23.82505 -22.37428 -21.91874 -20.92241 -20.78308 -19.25068 -18.59073 -17.20554 -17.11734 -16.94843 -16.86551 -16.12933 -15.83530 -15.56640 -15.39125 -14.98489 -14.68680 -14.02559 -13.94681 -13.84227 -13.55174 -13.27831 -13.22322 -13.14230 -12.72548 -12.34091 -12.13791 -11.94569 -11.75945 -11.58001 -11.20029 -11.11436 -10.99709 -10.84718 -10.45306 -10.00575 -9.70250 -8.64197 -7.83387 -5.23205 0.39956 1.14059 1.43299 1.46331 1.55452 2.02798 2.27133 2.37365 2.53733 3.29642 3.63176 3.65985 3.80203 4.03610 4.07313 4.21163 4.34550 4.49563 4.56710 4.64735 4.74943 4.78356 4.88610 4.90373 5.03231 5.08520 5.18944 5.29861 5.30748 5.32312 5.42474 5.52408 5.67295 5.68306 5.79846 5.99848 6.21639 6.42944 6.65165 7.19699 7.33102 7.93547 8.40545 9.20808 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.004515 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.359660 B = 6199.909379 C = 6700.305845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.044 4.044 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.301 1.301 6 H -0.285 1.285 7 C -0.262 4.262 8 H 0.057 0.943 9 N -0.603 5.603 10 C 0.167 3.833 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.168 3.832 14 H 0.037 0.963 15 N -0.706 5.706 16 C 0.572 3.428 17 O -0.596 6.596 18 C -0.271 4.271 19 C -0.208 4.208 20 C -0.017 4.017 21 O -0.173 6.173 22 C 0.050 3.950 23 C -0.141 4.141 24 C 0.156 3.844 25 H 0.245 0.755 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.414 0.586 33 H 0.144 0.856 34 H 0.250 0.750 35 H 0.255 0.745 36 H 0.083 0.917 37 H 0.013 0.987 38 H 0.025 0.975 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 -18.609 -5.784 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.240 4.240 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.229 1.229 6 H -0.212 1.212 7 C -0.392 4.392 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.044 3.956 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.064 3.936 14 H 0.055 0.945 15 N -0.357 5.357 16 C 0.361 3.639 17 O -0.478 6.478 18 C -0.275 4.275 19 C -0.227 4.227 20 C -0.082 4.082 21 O -0.067 6.067 22 C -0.020 4.020 23 C -0.183 4.183 24 C 0.027 3.973 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.251 0.749 33 H 0.162 0.838 34 H 0.266 0.734 35 H 0.271 0.729 36 H 0.101 0.899 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.295 -18.005 -6.031 20.342 hybrid contribution 0.587 1.700 -0.323 1.827 sum -6.708 -16.306 -6.354 18.742 Atomic orbital electron populations 1.70145 1.05899 1.24990 1.55174 1.25518 0.96020 1.00719 1.01711 0.85405 0.78702 0.80953 0.76568 1.19690 1.22878 1.21156 1.19426 0.93624 0.86935 1.39230 0.92493 1.44481 1.34165 1.01274 1.52565 1.20131 0.85440 0.99382 0.90649 1.20757 0.98355 0.96224 1.01070 1.21275 1.00946 0.97921 0.94159 1.20835 0.92370 0.92325 0.88074 0.94470 1.46062 1.58469 1.25835 1.05364 1.17933 0.78423 0.84656 0.82903 1.90806 1.47695 1.28551 1.80774 1.21564 1.11466 0.99522 0.94970 1.22956 1.05409 1.01911 0.92449 1.24554 1.00435 0.89419 0.93820 1.83839 1.62246 1.45607 1.15009 1.25080 0.94376 0.92039 0.90490 1.23109 0.95227 1.00160 0.99792 1.20402 0.95998 0.87585 0.93302 0.94519 0.94613 0.92682 0.93367 0.92590 0.89435 0.89273 0.74857 0.83815 0.73387 0.72941 0.89862 0.96817 0.95668 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 9.43 21.65 0.20 -53.88 16 2 C -0.04 -2.51 4.91 84.86 0.42 -2.10 16 3 Si 0.95 47.07 29.60 68.60 2.03 49.10 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.26 -14.93 9.62 84.03 0.81 -14.12 16 8 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 9 N -0.60 -30.07 2.61 -708.86 -1.85 -31.92 16 10 C 0.17 7.65 5.25 83.58 0.44 8.09 16 11 C -0.12 -5.20 5.02 28.35 0.14 -5.06 16 12 C -0.11 -3.37 5.33 29.51 0.16 -3.21 16 13 C 0.17 6.46 2.22 44.69 0.10 6.56 16 14 H 0.04 1.97 6.26 -2.39 -0.01 1.96 16 15 N -0.71 -21.23 4.97 -447.27 -2.22 -23.45 16 16 C 0.57 20.80 7.76 86.65 0.67 21.47 16 17 O -0.60 -29.62 16.65 -4.06 -0.07 -29.69 16 18 C -0.27 -7.26 6.31 -18.99 -0.12 -7.38 16 19 C -0.21 -5.13 11.01 23.65 0.26 -4.87 16 20 C -0.02 -0.27 12.03 66.89 0.80 0.54 16 21 O -0.17 -2.75 10.52 4.42 0.05 -2.70 16 22 C 0.05 0.82 11.61 67.39 0.78 1.60 16 23 C -0.14 -5.54 5.97 31.70 0.19 -5.35 16 24 C 0.16 6.44 5.13 87.43 0.45 6.89 16 25 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.05 2.91 6.05 -2.38 -0.01 2.90 16 28 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 29 H 0.06 2.93 5.29 -2.39 -0.01 2.91 16 30 H 0.09 2.45 6.28 -2.39 -0.01 2.43 16 31 H 0.09 2.24 7.86 -2.39 -0.02 2.22 16 32 H 0.41 7.85 7.45 -92.71 -0.69 7.15 16 33 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 34 H 0.25 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.25 1.51 7.47 -2.91 -0.02 1.48 16 36 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 37 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.02 1.07 7.99 -2.39 -0.02 1.05 16 39 H 0.06 2.19 6.89 -2.39 -0.02 2.17 16 Total: -1.00 -80.22 313.67 3.62 -76.60 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.38 Total: 12.87 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.10 Total: 3.07 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -3.87 Total: -109.26 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.02 Total: -32.39 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -80.22 3.62 -76.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052203963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.940 kcal (2) G-P(sol) polarization free energy of solvation -80.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds