Wall clock time and date at job start Tue Mar 31 2020 00:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48503 * 109.46789 * 269.99915 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99474 * 3 2 1 6 6 H 1.48498 * 109.47079 * 149.99611 * 3 2 1 7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47021 * 34.99609 * 10 9 7 12 12 C 1.52999 * 109.47487 * 274.99944 * 10 9 7 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 17 17 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 18 18 N 1.46500 * 109.47007 * 180.02562 * 16 15 14 19 19 C 1.34772 * 120.00198 * 274.99841 * 18 16 15 20 20 O 1.21697 * 119.99805 * 0.02562 * 19 18 16 21 21 C 1.46658 * 120.00384 * 180.02562 * 19 18 16 22 22 C 1.36546 * 125.98834 * 179.97438 * 21 19 18 23 23 C 1.40366 * 106.70689 * 179.97438 * 22 21 19 24 24 C 1.35133 * 107.11460 * 0.02562 * 23 22 21 25 25 O 1.33927 * 108.76605 * 359.76965 * 24 23 22 26 26 H 0.96996 * 120.00649 * 0.02562 * 1 2 3 27 27 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.46929 * 59.99046 * 12 10 9 29 29 H 1.09002 * 109.46716 * 299.99851 * 12 10 9 30 30 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 31 31 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 32 32 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 33 33 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 34 34 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 35 35 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 36 36 H 0.97002 * 120.00110 * 95.00836 * 18 16 15 37 37 H 1.08003 * 126.64566 * 0.02562 * 22 21 19 38 38 H 1.07996 * 126.44059 * 180.02562 * 23 22 21 39 39 H 1.07998 * 125.61585 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 2.4220 -4.0356 -1.4364 13 6 3.1876 -5.3603 -1.4363 14 6 2.3109 -6.4559 -0.8264 15 6 1.9470 -6.0771 0.6106 16 6 1.1815 -4.7524 0.6105 17 1 0.2707 -4.8592 0.0212 18 7 0.8336 -4.3894 1.9865 19 6 -0.2838 -4.8864 2.5526 20 8 -1.0037 -5.6373 1.9209 21 6 -0.6324 -4.5226 3.9299 22 6 -1.7296 -4.9519 4.6201 23 6 -1.6639 -4.3600 5.8912 24 6 -0.5439 -3.6044 5.9206 25 8 0.0773 -3.7087 4.7387 26 1 -0.4851 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 3.0468 -3.2553 -1.8708 29 1 1.5113 -4.1419 -2.0258 30 1 4.0983 -5.2536 -0.8470 31 1 3.4464 -5.6304 -2.4601 32 1 1.4002 -6.5627 -1.4157 33 1 2.8565 -7.3996 -0.8260 34 1 1.3229 -6.8578 1.0453 35 1 2.8578 -5.9703 1.1999 36 1 1.4076 -3.7911 2.4901 37 1 -2.4985 -5.6186 4.2583 38 1 -2.3747 -4.4850 6.6945 39 1 -0.2036 -3.0169 6.7604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085119251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:37 Heat of formation + Delta-G solvation = -23.956436 kcal Electronic energy + Delta-G solvation = -21998.366100 eV Core-core repulsion = 18714.283019 eV Total energy + Delta-G solvation = -3284.083082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.55835 -39.58998 -37.75292 -34.06439 -33.88446 -32.91433 -31.15343 -30.29229 -28.93909 -27.60881 -23.82127 -23.53749 -21.80732 -21.47954 -21.04250 -20.07098 -19.58018 -18.20464 -17.11869 -16.18452 -16.16000 -15.96225 -15.00240 -14.42447 -14.25092 -13.91006 -13.67214 -13.47448 -13.18444 -12.96649 -12.91122 -12.69982 -12.53158 -12.16224 -12.07937 -11.09291 -10.92151 -10.86239 -10.75931 -10.59910 -10.34624 -10.17247 -10.00168 -9.96609 -9.70199 -9.64324 -8.93032 -8.79470 -8.48614 -6.99135 -5.77854 -3.07815 1.21771 2.42144 2.83392 3.41189 3.43362 3.46500 3.48321 3.54828 4.55168 4.78879 4.94825 5.05098 5.07145 5.15203 5.30954 5.50954 5.52447 5.69029 5.70906 5.79250 5.81278 5.88666 5.93846 5.97125 5.97348 6.11455 6.31144 6.36300 6.45030 6.46350 6.48784 6.57661 6.79064 6.86639 6.93107 7.08589 7.67356 7.84317 8.38732 8.41513 9.50751 10.06846 10.41989 11.44067 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.006908 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.223461 B = 4052.364001 C = 6041.946887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.139 3.861 17 H 0.087 0.913 18 N -0.694 5.694 19 C 0.601 3.399 20 O -0.532 6.532 21 C -0.065 4.065 22 C -0.131 4.131 23 C -0.228 4.228 24 C -0.011 4.011 25 O -0.158 6.158 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 -11.494 8.302 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.164 4.164 16 C 0.034 3.966 17 H 0.105 0.895 18 N -0.341 5.341 19 C 0.387 3.613 20 O -0.411 6.411 21 C -0.118 4.118 22 C -0.152 4.152 23 C -0.247 4.247 24 C -0.081 4.081 25 O -0.053 6.053 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.161 -11.706 7.750 14.205 hybrid contribution 0.152 1.355 0.404 1.422 sum 2.313 -10.351 8.154 13.379 Atomic orbital electron populations 1.69668 1.05085 1.25638 1.57250 1.24740 0.95443 0.97628 1.02879 0.86231 0.78626 0.84033 0.77506 1.21752 1.21863 1.20799 1.19194 0.90906 0.83983 1.43139 0.91176 1.42412 1.05812 0.99467 1.88534 1.20469 0.93918 0.85717 0.93684 0.93077 1.22217 0.99999 0.95563 0.99578 1.21587 0.98537 0.95661 1.00001 1.21471 0.99967 0.98059 0.95645 1.21883 1.00072 0.97074 0.97341 1.21404 0.99317 0.94298 0.81531 0.89487 1.45838 1.24497 1.48240 1.15573 1.16542 0.81479 0.80609 0.82693 1.90842 1.51434 1.37190 1.61611 1.22262 0.95946 1.00218 0.93333 1.21918 0.98144 1.01623 0.93492 1.21806 1.00715 1.03108 0.99073 1.24367 0.94238 1.01874 0.87664 1.84112 1.45874 1.53227 1.22094 0.93513 0.78131 0.91532 0.92384 0.92359 0.92632 0.91886 0.92312 0.91826 0.91917 0.75630 0.82453 0.82867 0.77600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.41 4.95 -53.43 -0.26 -17.68 16 10 C 0.17 3.28 2.29 -67.93 -0.16 3.12 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.13 -2.29 5.50 -26.73 -0.15 -2.43 16 13 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.12 -1.78 5.49 -26.73 -0.15 -1.93 16 16 C 0.14 2.41 1.98 -67.93 -0.13 2.27 16 17 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 18 N -0.69 -12.09 4.90 -55.12 -0.27 -12.36 16 19 C 0.60 10.94 7.75 -12.86 -0.10 10.84 16 20 O -0.53 -10.79 16.53 5.19 0.09 -10.71 16 21 C -0.07 -1.06 7.13 -36.80 -0.26 -1.32 16 22 C -0.13 -1.86 10.62 -39.39 -0.42 -2.28 16 23 C -0.23 -2.61 10.87 -39.89 -0.43 -3.04 16 24 C -0.01 -0.13 12.08 29.63 0.36 0.23 16 25 O -0.16 -2.37 10.40 5.01 0.05 -2.32 16 26 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.38 10.28 7.80 -40.82 -0.32 9.97 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.41 7.00 8.36 -40.82 -0.34 6.66 16 37 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 38 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.21 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -31.39 328.97 -7.41 -38.80 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.67 Total: 14.32 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.00 Total: -4.95 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.19 Total: -57.17 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.14 Total: -13.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.39 -7.41 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085119251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.848 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds