Wall clock time and date at job start Tue Mar 31 2020 00:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48503 * 109.46789 * 269.99915 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99474 * 3 2 1 6 6 H 1.48498 * 109.47079 * 149.99611 * 3 2 1 7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47021 * 34.99609 * 10 9 7 12 12 C 1.52999 * 109.47487 * 274.99944 * 10 9 7 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 17 17 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 18 18 N 1.46500 * 109.47007 * 180.02562 * 16 15 14 19 19 C 1.34772 * 120.00198 * 274.99841 * 18 16 15 20 20 O 1.21697 * 119.99805 * 0.02562 * 19 18 16 21 21 C 1.46658 * 120.00384 * 180.02562 * 19 18 16 22 22 C 1.36546 * 125.98834 * 179.97438 * 21 19 18 23 23 C 1.40366 * 106.70689 * 179.97438 * 22 21 19 24 24 C 1.35133 * 107.11460 * 0.02562 * 23 22 21 25 25 O 1.33927 * 108.76605 * 359.76965 * 24 23 22 26 26 H 0.96996 * 120.00649 * 0.02562 * 1 2 3 27 27 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.46929 * 59.99046 * 12 10 9 29 29 H 1.09002 * 109.46716 * 299.99851 * 12 10 9 30 30 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 31 31 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 32 32 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 33 33 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 34 34 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 35 35 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 36 36 H 0.97002 * 120.00110 * 95.00836 * 18 16 15 37 37 H 1.08003 * 126.64566 * 0.02562 * 22 21 19 38 38 H 1.07996 * 126.44059 * 180.02562 * 23 22 21 39 39 H 1.07998 * 125.61585 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 2.4220 -4.0356 -1.4364 13 6 3.1876 -5.3603 -1.4363 14 6 2.3109 -6.4559 -0.8264 15 6 1.9470 -6.0771 0.6106 16 6 1.1815 -4.7524 0.6105 17 1 0.2707 -4.8592 0.0212 18 7 0.8336 -4.3894 1.9865 19 6 -0.2838 -4.8864 2.5526 20 8 -1.0037 -5.6373 1.9209 21 6 -0.6324 -4.5226 3.9299 22 6 -1.7296 -4.9519 4.6201 23 6 -1.6639 -4.3600 5.8912 24 6 -0.5439 -3.6044 5.9206 25 8 0.0773 -3.7087 4.7387 26 1 -0.4851 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 3.0468 -3.2553 -1.8708 29 1 1.5113 -4.1419 -2.0258 30 1 4.0983 -5.2536 -0.8470 31 1 3.4464 -5.6304 -2.4601 32 1 1.4002 -6.5627 -1.4157 33 1 2.8565 -7.3996 -0.8260 34 1 1.3229 -6.8578 1.0453 35 1 2.8578 -5.9703 1.1999 36 1 1.4076 -3.7911 2.4901 37 1 -2.4985 -5.6186 4.2583 38 1 -2.3747 -4.4850 6.6945 39 1 -0.2036 -3.0169 6.7604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085119251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:36 Heat of formation + Delta-G solvation = -45.242931 kcal Electronic energy + Delta-G solvation = -21999.289152 eV Core-core repulsion = 18714.283019 eV Total energy + Delta-G solvation = -3285.006133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.61839 -40.99258 -39.16865 -35.83086 -35.28869 -33.99390 -33.01373 -31.47912 -30.23494 -29.17920 -25.69590 -24.80416 -22.98510 -22.68950 -22.40316 -21.39043 -20.83174 -19.55779 -18.99292 -17.41935 -17.31296 -17.30359 -16.67722 -15.83671 -15.79837 -15.35735 -15.22532 -14.77217 -14.63291 -14.31761 -14.02090 -13.91487 -13.64452 -13.60251 -13.45812 -12.93683 -12.81265 -12.26474 -12.19721 -12.04661 -12.03665 -11.71136 -11.44863 -11.39780 -11.08826 -11.02677 -10.86423 -10.14935 -9.61089 -9.00941 -7.91934 -5.21274 0.06010 1.44730 1.47300 1.48639 1.56759 1.73033 2.12990 2.28036 2.56220 3.41200 3.64332 3.74054 3.82932 3.97649 4.08560 4.15134 4.25221 4.29638 4.42275 4.46746 4.58137 4.64199 4.68515 4.90247 4.94550 4.95474 4.99700 5.11713 5.24021 5.28704 5.30008 5.41429 5.43954 5.50899 5.53465 5.64352 5.88956 6.27439 6.46663 7.02414 7.33988 8.07399 8.31743 9.31206 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.006908 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.223461 B = 4052.364001 C = 6041.946887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.970 3.030 4 H -0.291 1.291 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.172 3.828 11 H 0.058 0.942 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.116 4.116 16 C 0.146 3.854 17 H 0.058 0.942 18 N -0.693 5.693 19 C 0.597 3.403 20 O -0.565 6.565 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.230 4.230 24 C 0.003 3.997 25 O -0.176 6.176 26 H 0.248 0.752 27 H 0.368 0.632 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.409 0.591 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -12.169 9.765 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.218 1.218 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.371 5.371 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.155 4.155 16 C 0.041 3.959 17 H 0.077 0.923 18 N -0.340 5.340 19 C 0.384 3.616 20 O -0.447 6.447 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.248 4.248 24 C -0.067 4.067 25 O -0.071 6.071 26 H 0.057 0.943 27 H 0.199 0.801 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.244 0.756 37 H 0.178 0.822 38 H 0.206 0.794 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.912 -12.421 9.211 15.950 hybrid contribution -0.390 1.524 0.044 1.574 sum 3.523 -10.897 9.254 14.724 Atomic orbital electron populations 1.69845 1.06733 1.25748 1.59786 1.25521 0.96183 1.00981 1.04075 0.85191 0.77811 0.79829 0.77229 1.21808 1.22731 1.19083 1.19591 0.91415 0.84864 1.40497 0.90213 1.42583 1.05128 1.00804 1.88605 1.20688 0.93767 0.84191 0.95073 0.92428 1.22080 0.99631 0.97587 0.97473 1.21523 0.98353 0.93234 1.01671 1.21480 0.99985 0.99146 0.94139 1.21826 1.00029 0.94746 0.98850 1.21314 0.98103 0.95385 0.81125 0.92343 1.45846 1.24532 1.48184 1.15483 1.16839 0.81039 0.80098 0.83608 1.90798 1.52301 1.38771 1.62849 1.21969 0.97775 1.03125 0.93257 1.22247 0.97174 1.00843 0.94579 1.22212 1.01519 1.02454 0.98642 1.25409 0.93493 1.00671 0.87089 1.84091 1.46507 1.53285 1.23256 0.94347 0.80120 0.93025 0.93903 0.90964 0.90643 0.92595 0.89236 0.92251 0.90322 0.75571 0.82159 0.79393 0.73102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -36.26 4.95 -322.94 -1.60 -37.86 16 10 C 0.17 6.54 2.29 44.99 0.10 6.65 16 11 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 12 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 13 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 14 C -0.11 -2.58 5.92 30.60 0.18 -2.40 16 15 C -0.12 -3.18 5.49 30.59 0.17 -3.01 16 16 C 0.15 5.14 1.98 44.99 0.09 5.23 16 17 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 18 N -0.69 -24.96 4.90 -446.52 -2.19 -27.15 16 19 C 0.60 22.63 7.75 86.44 0.67 23.30 16 20 O -0.57 -24.10 16.53 -4.34 -0.07 -24.17 16 21 C -0.11 -3.63 7.13 24.07 0.17 -3.45 16 22 C -0.13 -3.57 10.62 22.39 0.24 -3.33 16 23 C -0.23 -4.68 10.87 22.07 0.24 -4.44 16 24 C 0.00 0.05 12.08 67.10 0.81 0.86 16 25 O -0.18 -5.16 10.40 -4.98 -0.05 -5.21 16 26 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.37 20.57 7.80 -92.70 -0.72 19.85 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.41 14.40 8.36 -92.71 -0.77 13.63 16 37 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.25 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -70.53 328.97 2.29 -68.25 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.43 Total: 40.76 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.32 Total: -2.79 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -3.51 Total: -124.70 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.12 Total: -29.38 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.53 2.29 -68.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085119251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.003 kcal (2) G-P(sol) polarization free energy of solvation -70.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds