Wall clock time and date at job start Tue Mar 31 2020 00:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08999 * 110.07246 * 240.69201 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21609 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.47378 * 119.99940 * 179.97438 * 18 17 16 21 21 C 1.47020 * 127.19066 * 179.71209 * 20 18 17 22 22 C 1.34181 * 105.95470 * 179.83522 * 21 20 18 23 23 O 1.34214 * 109.12201 * 0.43548 * 22 21 20 24 24 C 1.33648 * 110.90977 * 359.71077 * 23 22 21 25 25 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 29 29 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 30 30 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 31 31 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 32 32 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 33 33 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 34 34 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 35 35 H 1.08000 * 127.02462 * 0.02562 * 21 20 18 36 36 H 1.07997 * 125.44259 * 180.14791 * 22 21 20 37 37 H 1.08006 * 125.80643 * 180.02562 * 24 23 22 38 38 H 1.09002 * 110.48043 * 217.71140 * 25 14 13 39 39 H 1.09000 * 110.48785 * 95.07352 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5532 -3.2379 -0.5375 12 6 4.4236 -2.9249 1.4467 13 6 5.6485 -3.8507 1.2975 14 6 6.3476 -3.4472 -0.0126 15 1 6.3653 -4.2909 -0.7025 16 6 7.7746 -2.9781 0.2778 17 7 8.5785 -4.1140 0.7354 18 6 9.8767 -3.9371 1.0515 19 8 10.3805 -2.8343 0.9573 20 6 10.6852 -5.0798 1.5124 21 6 12.1059 -5.0682 1.8905 22 6 12.4039 -6.3280 2.2436 23 8 11.3101 -7.0935 2.1064 24 6 10.2734 -6.3706 1.6717 25 6 5.5226 -2.2906 -0.6141 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3622 -0.0014 28 1 4.6684 -2.0660 2.0714 29 1 3.5794 -3.4735 1.8645 30 1 5.3263 -4.8906 1.2438 31 1 6.3263 -3.7132 2.1400 32 1 8.2132 -2.5650 -0.6306 33 1 7.7545 -2.2116 1.0525 34 1 8.1767 -4.9937 0.8102 35 1 12.7727 -4.2186 1.8879 36 1 13.3709 -6.6721 2.5797 37 1 9.2786 -6.7445 1.4795 38 1 5.4810 -2.3763 -1.6999 39 1 5.9446 -1.3290 -0.3223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086644505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:59 Heat of formation + Delta-G solvation = -19.455511 kcal Electronic energy + Delta-G solvation = -20747.146344 eV Core-core repulsion = 17463.258437 eV Total energy + Delta-G solvation = -3283.887907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.90141 -39.73734 -38.19452 -35.07491 -33.58308 -33.09176 -31.16126 -30.33094 -29.02155 -27.60187 -25.02102 -23.18327 -22.70877 -21.82674 -20.55486 -19.87745 -19.53500 -18.60660 -17.55150 -16.54526 -16.46607 -16.21166 -15.62168 -15.17086 -14.86771 -14.77250 -14.12422 -13.59878 -13.28042 -13.17692 -12.97739 -12.84956 -12.66568 -12.42196 -12.21157 -11.36754 -11.01481 -10.85461 -10.67241 -10.61398 -10.42102 -10.27546 -10.18451 -10.18181 -9.89997 -9.58628 -9.30934 -9.13663 -8.90849 -7.26208 -5.77547 -3.12871 0.99104 1.72048 2.52557 2.95808 3.14479 3.38394 3.41709 3.46197 4.19964 4.31295 4.59173 4.63325 4.74637 4.82284 4.90000 5.13890 5.28597 5.40086 5.46135 5.49437 5.60432 5.62323 5.69215 5.79711 5.89580 5.91875 5.95869 6.07998 6.20580 6.25293 6.29263 6.41025 6.54794 6.59088 6.78079 6.97059 7.29259 7.99233 8.02370 8.42101 9.20623 9.93445 10.13154 11.40776 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.002890 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.601917 B = 9685.407794 C =10094.620350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.182 3.818 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.121 4.121 14 C -0.101 4.101 15 H 0.076 0.924 16 C 0.127 3.873 17 N -0.723 5.723 18 C 0.583 3.417 19 O -0.537 6.537 20 C -0.233 4.233 21 C -0.166 4.166 22 C -0.041 4.041 23 O -0.175 6.175 24 C 0.020 3.980 25 C -0.126 4.126 26 H 0.259 0.741 27 H 0.361 0.639 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.398 0.602 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.212 0.788 38 H 0.067 0.933 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.329 -15.445 3.186 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.072 3.928 11 H 0.083 0.917 12 C -0.184 4.184 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.094 0.906 16 C 0.004 3.996 17 N -0.374 5.374 18 C 0.370 3.630 19 O -0.415 6.415 20 C -0.238 4.238 21 C -0.185 4.185 22 C -0.107 4.107 23 O -0.070 6.070 24 C -0.051 4.051 25 C -0.166 4.166 26 H 0.069 0.931 27 H 0.194 0.806 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.232 0.768 35 H 0.177 0.823 36 H 0.226 0.774 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.409 -14.974 3.158 27.967 hybrid contribution 0.358 1.027 0.090 1.091 sum 23.767 -13.947 3.248 27.747 Atomic orbital electron populations 1.69702 1.05121 1.25833 1.57539 1.24683 0.95247 0.97249 1.02029 0.86555 0.79254 0.84958 0.77808 1.21063 1.21767 1.20261 1.19092 0.80621 0.94689 1.42988 0.89216 1.42749 1.04028 1.02017 1.89808 1.21133 0.89847 0.89202 0.92625 0.91711 1.23039 0.95982 0.98536 1.00882 1.22225 0.97903 0.99653 0.96168 1.21965 0.92748 0.99292 0.98016 0.90556 1.21593 0.89909 0.88107 0.99991 1.45899 1.10154 1.13056 1.68322 1.17285 0.81300 0.87299 0.77103 1.90801 1.71719 1.25561 1.53373 1.21604 0.96051 0.94170 1.11955 1.22817 0.94198 0.98157 1.03370 1.23970 0.90809 0.89939 1.06007 1.83796 1.17975 1.39547 1.65648 1.24472 0.92295 0.89767 0.98547 1.22645 0.96552 0.97292 1.00070 0.93067 0.80565 0.91967 0.92065 0.92179 0.92274 0.91338 0.91029 0.76843 0.82286 0.77435 0.77203 0.91408 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.18 27.73 -169.99 -4.71 17.47 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.81 10.44 -15.06 -0.16 -6.97 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.74 -17.34 5.03 -51.51 -0.26 -17.60 16 10 C 0.18 3.33 3.56 -65.95 -0.23 3.09 16 11 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 12 C -0.14 -2.34 6.51 -25.07 -0.16 -2.50 16 13 C -0.12 -1.43 6.19 -25.61 -0.16 -1.59 16 14 C -0.10 -1.14 2.96 -89.50 -0.27 -1.40 16 15 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.13 1.46 4.69 -4.05 -0.02 1.44 16 17 N -0.72 -7.10 5.33 -61.40 -0.33 -7.43 16 18 C 0.58 7.15 7.81 -12.54 -0.10 7.05 16 19 O -0.54 -8.86 16.98 5.27 0.09 -8.77 16 20 C -0.23 -2.28 6.31 -103.28 -0.65 -2.93 16 21 C -0.17 -1.46 11.01 -37.45 -0.41 -1.88 16 22 C -0.04 -0.26 12.03 29.30 0.35 0.09 16 23 O -0.17 -1.27 10.52 7.67 0.08 -1.19 16 24 C 0.02 0.13 11.61 30.08 0.35 0.48 16 25 C -0.13 -1.83 5.99 -25.09 -0.15 -1.98 16 26 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 27 H 0.36 8.34 5.63 -40.82 -0.23 8.11 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.67 7.61 -51.93 -0.40 0.27 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 2.65 7.32 -40.82 -0.30 2.35 16 35 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.21 0.59 7.47 -52.48 -0.39 0.20 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -35.18 328.25 -6.65 -41.83 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.53 Total: 6.37 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.70 Total: -7.09 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.19 Total: -53.56 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.17 Total: -9.96 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.18 -6.65 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086644505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.377 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds