Wall clock time and date at job start Tue Mar 31 2020 00:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08999 * 110.07246 * 240.69201 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21609 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.47378 * 119.99940 * 179.97438 * 18 17 16 21 21 C 1.47020 * 127.19066 * 179.71209 * 20 18 17 22 22 C 1.34181 * 105.95470 * 179.83522 * 21 20 18 23 23 O 1.34214 * 109.12201 * 0.43548 * 22 21 20 24 24 C 1.33648 * 110.90977 * 359.71077 * 23 22 21 25 25 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 29 29 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 30 30 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 31 31 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 32 32 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 33 33 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 34 34 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 35 35 H 1.08000 * 127.02462 * 0.02562 * 21 20 18 36 36 H 1.07997 * 125.44259 * 180.14791 * 22 21 20 37 37 H 1.08006 * 125.80643 * 180.02562 * 24 23 22 38 38 H 1.09002 * 110.48043 * 217.71140 * 25 14 13 39 39 H 1.09000 * 110.48785 * 95.07352 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5532 -3.2379 -0.5375 12 6 4.4236 -2.9249 1.4467 13 6 5.6485 -3.8507 1.2975 14 6 6.3476 -3.4472 -0.0126 15 1 6.3653 -4.2909 -0.7025 16 6 7.7746 -2.9781 0.2778 17 7 8.5785 -4.1140 0.7354 18 6 9.8767 -3.9371 1.0515 19 8 10.3805 -2.8343 0.9573 20 6 10.6852 -5.0798 1.5124 21 6 12.1059 -5.0682 1.8905 22 6 12.4039 -6.3280 2.2436 23 8 11.3101 -7.0935 2.1064 24 6 10.2734 -6.3706 1.6717 25 6 5.5226 -2.2906 -0.6141 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3622 -0.0014 28 1 4.6684 -2.0660 2.0714 29 1 3.5794 -3.4735 1.8645 30 1 5.3263 -4.8906 1.2438 31 1 6.3263 -3.7132 2.1400 32 1 8.2132 -2.5650 -0.6306 33 1 7.7545 -2.2116 1.0525 34 1 8.1767 -4.9937 0.8102 35 1 12.7727 -4.2186 1.8879 36 1 13.3709 -6.6721 2.5797 37 1 9.2786 -6.7445 1.4795 38 1 5.4810 -2.3763 -1.6999 39 1 5.9446 -1.3290 -0.3223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086644505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:58 Heat of formation + Delta-G solvation = -45.088948 kcal Electronic energy + Delta-G solvation = -20748.257893 eV Core-core repulsion = 17463.258437 eV Total energy + Delta-G solvation = -3284.999456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.45233 -40.69237 -39.40027 -36.43352 -35.06591 -33.83774 -32.98803 -31.13484 -30.03836 -28.97710 -26.15953 -24.62595 -23.94124 -22.37725 -21.68065 -20.98671 -20.59101 -19.59775 -19.26026 -17.30179 -17.24430 -17.06750 -16.62295 -16.59150 -16.03471 -15.79430 -15.55479 -14.80789 -14.45058 -14.35622 -14.19137 -14.05017 -13.83868 -13.41239 -13.29522 -13.11707 -12.68625 -12.34736 -12.11669 -11.96491 -11.84945 -11.72119 -11.52429 -11.27156 -11.13663 -10.94250 -10.85567 -10.15746 -9.71212 -9.27677 -8.02447 -5.34548 0.37750 1.14042 1.37639 1.39810 1.47076 2.01174 2.19809 2.32753 2.48013 3.28388 3.54322 3.63695 3.68979 3.78613 3.81110 4.14514 4.16295 4.37934 4.46358 4.56479 4.61962 4.64502 4.74428 4.77018 4.79148 4.91230 5.05103 5.06994 5.11881 5.21154 5.32200 5.34159 5.45116 5.54714 5.56807 5.78851 6.00835 6.23139 6.53601 7.08869 7.19428 7.87430 8.04525 9.19191 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.002890 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.601917 B = 9685.407794 C =10094.620350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.226 4.226 8 H 0.059 0.941 9 N -0.751 5.751 10 C 0.167 3.833 11 H 0.057 0.943 12 C -0.142 4.142 13 C -0.109 4.109 14 C -0.084 4.084 15 H 0.106 0.894 16 C 0.133 3.867 17 N -0.706 5.706 18 C 0.581 3.419 19 O -0.592 6.592 20 C -0.272 4.272 21 C -0.202 4.202 22 C -0.023 4.023 23 O -0.177 6.177 24 C 0.048 3.952 25 C -0.120 4.120 26 H 0.257 0.743 27 H 0.364 0.636 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.416 0.584 35 H 0.150 0.850 36 H 0.246 0.754 37 H 0.252 0.748 38 H 0.076 0.924 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.633 -17.576 3.354 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.357 4.357 8 H 0.077 0.923 9 N -0.393 5.393 10 C 0.059 3.941 11 H 0.075 0.925 12 C -0.182 4.182 13 C -0.147 4.147 14 C -0.103 4.103 15 H 0.124 0.876 16 C 0.009 3.991 17 N -0.358 5.358 18 C 0.370 3.630 19 O -0.474 6.474 20 C -0.277 4.277 21 C -0.222 4.222 22 C -0.088 4.088 23 O -0.071 6.071 24 C -0.023 4.023 25 C -0.159 4.159 26 H 0.066 0.934 27 H 0.197 0.803 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.168 0.832 36 H 0.262 0.738 37 H 0.268 0.732 38 H 0.095 0.905 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.755 -17.186 3.332 31.142 hybrid contribution -0.364 1.543 0.051 1.586 sum 25.391 -15.643 3.383 30.014 Atomic orbital electron populations 1.69878 1.07053 1.26544 1.60084 1.25485 0.96103 1.01146 1.03061 0.85438 0.78534 0.79908 0.78067 1.20415 1.22445 1.17992 1.19071 0.82723 0.93373 1.40570 0.92337 1.42805 1.02463 1.04105 1.89945 1.21455 0.91354 0.86971 0.94359 0.92489 1.22900 0.97758 0.98839 0.98712 1.22158 0.95799 0.99955 0.96771 1.21837 0.91623 0.98788 0.98054 0.87560 1.21396 0.90152 0.88330 0.99200 1.45684 1.09345 1.13510 1.67286 1.17679 0.81798 0.87253 0.76248 1.90767 1.72871 1.27792 1.55974 1.21546 0.96564 0.94729 1.14853 1.22969 0.94362 0.99305 1.05555 1.24576 0.91616 0.88817 1.03819 1.83848 1.18321 1.39643 1.65317 1.25136 0.93316 0.88370 0.95436 1.22552 0.94261 0.98539 1.00577 0.93441 0.80326 0.93628 0.93417 0.89405 0.91266 0.91934 0.92903 0.74629 0.83181 0.73828 0.73224 0.90544 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.60 13.97 21.65 0.30 -63.30 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.95 46.27 27.73 68.60 1.90 48.18 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 7 C -0.23 -12.87 10.44 84.04 0.88 -12.00 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -34.78 5.03 -316.89 -1.59 -36.38 16 10 C 0.17 5.93 3.56 46.27 0.16 6.10 16 11 H 0.06 2.11 8.09 -2.39 -0.02 2.10 16 12 C -0.14 -4.44 6.51 31.67 0.21 -4.23 16 13 C -0.11 -2.20 6.19 31.32 0.19 -2.01 16 14 C -0.08 -1.61 2.96 -10.07 -0.03 -1.64 16 15 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 16 C 0.13 2.76 4.69 86.38 0.40 3.17 16 17 N -0.71 -12.00 5.33 -466.43 -2.49 -14.48 16 18 C 0.58 13.65 7.81 86.65 0.68 14.33 16 19 O -0.59 -19.90 16.98 -4.06 -0.07 -19.97 16 20 C -0.27 -4.86 6.31 -18.99 -0.12 -4.98 16 21 C -0.20 -3.39 11.01 23.65 0.26 -3.13 16 22 C -0.02 -0.23 12.03 66.89 0.80 0.57 16 23 O -0.18 -1.94 10.52 4.51 0.05 -1.89 16 24 C 0.05 0.47 11.61 67.39 0.78 1.26 16 25 C -0.12 -3.23 5.99 31.66 0.19 -3.05 16 26 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 27 H 0.36 16.39 5.63 -92.71 -0.52 15.87 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.32 7.61 -2.38 -0.02 1.30 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.42 3.75 7.32 -92.71 -0.68 3.07 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.25 0.33 8.06 -2.91 -0.02 0.30 16 37 H 0.25 0.05 7.47 -2.91 -0.02 0.03 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.75 7.73 -2.39 -0.02 1.73 16 Total: -1.00 -80.56 328.25 2.79 -77.77 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.19 Total: 19.18 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.88 Total: -9.11 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -3.78 Total: -114.16 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.02 Total: -21.86 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.90 Total: 48.18 kcal Total: -80.56 2.79 -77.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086644505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.680 kcal (2) G-P(sol) polarization free energy of solvation -80.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds