Wall clock time and date at job start Tue Mar 31 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48503 * 109.47070 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47177 * 119.99668 * 3 2 1 6 6 H 1.48498 * 109.47135 * 239.99872 * 3 2 1 7 7 C 1.38806 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00499 * 162.64517 * 7 2 1 9 9 N 1.36943 * 119.99964 * 342.64790 * 7 2 1 10 10 C 1.46924 * 120.62995 * 332.32530 * 9 7 2 11 11 C 1.53197 * 108.77415 * 233.58592 * 10 9 7 12 12 C 1.53042 * 109.31056 * 305.36136 * 11 10 9 13 13 H 1.08996 * 109.45928 * 301.34820 * 12 11 10 14 14 N 1.46494 * 109.46035 * 181.38724 * 12 11 10 15 15 C 1.34774 * 120.00292 * 84.99813 * 14 12 11 16 16 O 1.21619 * 119.99973 * 0.02562 * 15 14 12 17 17 C 1.43199 * 120.00358 * 180.02562 * 15 14 12 18 18 C 9.68663 * 84.63508 * 145.18541 * 2 1 3 19 19 C 9.05300 * 131.61761 * 129.44710 * 9 1 2 20 20 C 1.52999 * 117.49812 * 38.81328 * 19 18 17 21 21 C 1.52992 * 117.49895 * 330.15156 * 19 18 17 22 22 C 1.53041 * 109.53755 * 61.36512 * 12 11 10 23 23 H 1.09011 * 109.49404 * 58.58367 * 22 12 11 24 24 O 1.42897 * 109.49995 * 178.64694 * 22 12 11 25 25 C 1.46929 * 120.63170 * 152.04076 * 9 7 2 26 26 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.58594 * 353.36665 * 10 9 7 28 28 H 1.08999 * 109.59081 * 113.65382 * 10 9 7 29 29 H 1.08998 * 109.49525 * 65.31225 * 11 10 9 30 30 H 1.09000 * 109.49314 * 185.41423 * 11 10 9 31 31 H 0.97004 * 120.00063 * 265.00888 * 14 12 11 32 32 H 1.08996 * 115.54330 * 184.47898 * 19 18 17 33 33 H 1.08997 * 117.49731 * 359.97438 * 20 19 18 34 34 H 1.08999 * 117.49824 * 145.02494 * 20 19 18 35 35 H 1.09004 * 117.49845 * 214.98138 * 21 19 18 36 36 H 1.09006 * 117.50079 * 359.97216 * 21 19 18 37 37 H 0.96693 * 114.00030 * 180.02562 * 24 22 12 38 38 H 1.09001 * 109.58656 * 246.20481 * 25 9 7 39 39 H 1.09002 * 109.58616 * 6.62798 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6964 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 0.2277 -2.3340 1.2755 11 6 0.5004 -3.3037 2.4297 12 6 0.8182 -4.6891 1.8624 13 1 -0.0209 -5.0356 1.2592 14 7 1.0471 -5.6269 2.9643 15 6 0.0033 -6.2477 3.5487 16 8 -1.1286 -6.0296 3.1610 17 6 0.2270 -7.1640 4.6262 18 6 0.4105 -7.9179 5.5061 19 6 0.6405 -8.8584 6.6161 20 6 -0.1240 -10.1834 6.5893 21 6 -0.5135 -9.0947 7.5924 22 6 2.0740 -4.6097 0.9912 23 1 2.9078 -4.2395 1.5879 24 8 2.3880 -5.9095 0.4875 25 6 1.8156 -3.6542 -0.1836 26 1 -0.4851 0.8400 -0.0004 27 1 0.0985 -1.3254 1.6684 28 1 -0.6749 -2.6381 0.7455 29 1 1.3490 -2.9458 3.0127 30 1 -0.3805 -3.3655 3.0687 31 1 1.9499 -5.8010 3.2734 32 1 1.6525 -8.8693 7.0207 33 1 -0.7976 -10.3589 5.7505 34 1 0.3848 -11.0659 6.9769 35 1 -0.2606 -9.2615 8.6395 36 1 -1.4428 -8.5538 7.4136 37 1 3.1748 -5.9341 -0.0740 38 1 1.0403 -4.0661 -0.8296 39 1 2.7344 -3.5170 -0.7538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099812792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:42 Heat of formation + Delta-G solvation = 14.105386 kcal Electronic energy + Delta-G solvation = -21074.496796 eV Core-core repulsion = 17792.064199 eV Total energy + Delta-G solvation = -3282.432597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.76146 -38.01750 -37.78218 -35.42211 -34.34844 -32.90902 -31.83641 -30.00080 -28.57371 -25.75005 -24.42621 -22.81644 -22.60819 -22.16247 -21.11883 -19.75421 -18.46177 -17.12854 -16.83531 -16.57497 -16.00471 -15.33183 -14.95974 -14.72485 -14.42845 -13.93590 -13.67128 -13.24237 -12.90865 -12.83440 -12.37878 -12.25246 -12.04513 -11.90608 -11.60075 -11.56399 -11.13207 -10.87180 -10.76824 -10.42892 -10.36905 -10.29554 -10.07575 -9.94911 -9.92922 -9.75568 -9.51610 -8.81423 -8.47015 -6.78963 -5.85903 -3.30314 1.51685 2.21535 3.12652 3.24886 3.34701 3.41027 3.41635 3.85982 4.10085 4.36308 4.39320 4.50725 4.58293 4.69470 5.21455 5.22877 5.29601 5.32143 5.45049 5.50293 5.53046 5.64899 5.68334 5.73509 5.95272 6.08358 6.26248 6.46357 6.49301 6.64963 6.75638 6.79820 7.13746 7.27400 7.58972 7.64647 7.71670 7.90592 8.30823 8.36580 9.11838 9.74240 10.30077 11.22625 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031259 B = 0.003325 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.522419 B = 8419.309413 C = 8784.582114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.701 5.701 15 C 0.628 3.372 16 O -0.525 6.525 17 C -0.203 4.203 18 C -0.071 4.071 19 C -0.062 4.062 20 C -0.161 4.161 21 C -0.161 4.161 22 C 0.080 3.920 23 H 0.058 0.942 24 O -0.571 6.571 25 C 0.121 3.879 26 H 0.257 0.743 27 H 0.094 0.906 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.400 0.600 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.374 0.626 38 H 0.030 0.970 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.455 -16.204 11.624 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.188 4.188 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.350 5.350 15 C 0.414 3.586 16 O -0.403 6.403 17 C -0.206 4.206 18 C -0.073 4.073 19 C -0.080 4.080 20 C -0.198 4.198 21 C -0.198 4.198 22 C 0.019 3.981 23 H 0.076 0.924 24 O -0.376 6.376 25 C -0.006 4.006 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.234 0.766 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.221 0.779 38 H 0.048 0.952 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.985 -16.019 11.629 20.019 hybrid contribution 1.417 0.974 -0.188 1.729 sum 4.402 -15.046 11.441 19.407 Atomic orbital electron populations 1.70020 1.05305 1.25924 1.52983 1.25075 0.95301 0.98563 1.00438 0.86338 0.78911 0.83159 0.78143 1.21543 1.20943 1.20819 1.19117 0.92694 0.84670 1.42567 0.91544 1.44067 1.35952 1.01109 1.50091 1.20842 0.88721 0.98421 0.87554 1.22633 1.01200 0.94071 1.00901 1.21115 0.97917 0.89164 0.85913 0.89068 1.45964 1.08903 1.44275 1.35864 1.14685 0.85164 0.78826 0.79918 1.90868 1.22277 1.63785 1.63350 1.20851 1.01755 0.99886 0.98062 1.21277 0.98738 0.93925 0.93382 1.18899 0.98749 0.95514 0.94822 1.23116 1.02666 0.91743 1.02234 1.23126 0.98397 1.02126 0.96173 1.22879 0.95835 0.83165 0.96250 0.92429 1.86481 1.50623 1.30211 1.70258 1.21613 0.98877 0.87370 0.92784 0.93332 0.88763 0.95668 0.92167 0.91760 0.76637 0.84770 0.88043 0.87414 0.87421 0.87999 0.77915 0.95174 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.79 11.19 55.49 0.62 -25.17 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.91 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.36 2.99 -172.05 -0.51 -14.87 16 10 C 0.17 4.09 5.31 -3.71 -0.02 4.07 16 11 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 12 C 0.16 2.98 2.12 -67.89 -0.14 2.84 16 13 H 0.09 1.91 7.57 -51.93 -0.39 1.52 16 14 N -0.70 -11.25 4.91 -56.21 -0.28 -11.53 16 15 C 0.63 11.04 7.61 -14.34 -0.11 10.93 16 16 O -0.53 -11.18 16.75 5.26 0.09 -11.09 16 17 C -0.20 -3.04 13.61 -38.85 -0.53 -3.56 16 18 C -0.07 -0.88 13.47 -37.09 -0.50 -1.37 16 19 C -0.06 -0.51 6.22 -93.37 -0.58 -1.09 16 20 C -0.16 -1.07 10.21 -26.69 -0.27 -1.34 16 21 C -0.16 -1.09 10.21 -26.70 -0.27 -1.36 16 22 C 0.08 1.36 3.16 -26.39 -0.08 1.28 16 23 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 24 O -0.57 -8.59 13.16 -35.23 -0.46 -9.06 16 25 C 0.12 2.45 6.17 -3.49 -0.02 2.43 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.09 2.50 6.04 -51.93 -0.31 2.18 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.40 5.37 8.57 -40.82 -0.35 5.02 16 32 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.37 3.99 9.09 45.56 0.41 4.40 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -32.49 334.95 -8.27 -40.76 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.83 Total: 7.02 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.91 Total: 2.69 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.17 Total: -51.57 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.38 Total: -20.15 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.49 -8.27 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099812792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.865 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds