Wall clock time and date at job start Tue Mar 31 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48503 * 109.47070 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47177 * 119.99668 * 3 2 1 6 6 H 1.48498 * 109.47135 * 239.99872 * 3 2 1 7 7 C 1.38806 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00499 * 162.64517 * 7 2 1 9 9 N 1.36943 * 119.99964 * 342.64790 * 7 2 1 10 10 C 1.46924 * 120.62995 * 332.32530 * 9 7 2 11 11 C 1.53197 * 108.77415 * 233.58592 * 10 9 7 12 12 C 1.53042 * 109.31056 * 305.36136 * 11 10 9 13 13 H 1.08996 * 109.45928 * 301.34820 * 12 11 10 14 14 N 1.46494 * 109.46035 * 181.38724 * 12 11 10 15 15 C 1.34774 * 120.00292 * 84.99813 * 14 12 11 16 16 O 1.21619 * 119.99973 * 0.02562 * 15 14 12 17 17 C 1.43199 * 120.00358 * 180.02562 * 15 14 12 18 18 C 9.68663 * 84.63508 * 145.18541 * 2 1 3 19 19 C 9.05300 * 131.61761 * 129.44710 * 9 1 2 20 20 C 1.52999 * 117.49812 * 38.81328 * 19 18 17 21 21 C 1.52992 * 117.49895 * 330.15156 * 19 18 17 22 22 C 1.53041 * 109.53755 * 61.36512 * 12 11 10 23 23 H 1.09011 * 109.49404 * 58.58367 * 22 12 11 24 24 O 1.42897 * 109.49995 * 178.64694 * 22 12 11 25 25 C 1.46929 * 120.63170 * 152.04076 * 9 7 2 26 26 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.58594 * 353.36665 * 10 9 7 28 28 H 1.08999 * 109.59081 * 113.65382 * 10 9 7 29 29 H 1.08998 * 109.49525 * 65.31225 * 11 10 9 30 30 H 1.09000 * 109.49314 * 185.41423 * 11 10 9 31 31 H 0.97004 * 120.00063 * 265.00888 * 14 12 11 32 32 H 1.08996 * 115.54330 * 184.47898 * 19 18 17 33 33 H 1.08997 * 117.49731 * 359.97438 * 20 19 18 34 34 H 1.08999 * 117.49824 * 145.02494 * 20 19 18 35 35 H 1.09004 * 117.49845 * 214.98138 * 21 19 18 36 36 H 1.09006 * 117.50079 * 359.97216 * 21 19 18 37 37 H 0.96693 * 114.00030 * 180.02562 * 24 22 12 38 38 H 1.09001 * 109.58656 * 246.20481 * 25 9 7 39 39 H 1.09002 * 109.58616 * 6.62798 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6964 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 0.2277 -2.3340 1.2755 11 6 0.5004 -3.3037 2.4297 12 6 0.8182 -4.6891 1.8624 13 1 -0.0209 -5.0356 1.2592 14 7 1.0471 -5.6269 2.9643 15 6 0.0033 -6.2477 3.5487 16 8 -1.1286 -6.0296 3.1610 17 6 0.2270 -7.1640 4.6262 18 6 0.4105 -7.9179 5.5061 19 6 0.6405 -8.8584 6.6161 20 6 -0.1240 -10.1834 6.5893 21 6 -0.5135 -9.0947 7.5924 22 6 2.0740 -4.6097 0.9912 23 1 2.9078 -4.2395 1.5879 24 8 2.3880 -5.9095 0.4875 25 6 1.8156 -3.6542 -0.1836 26 1 -0.4851 0.8400 -0.0004 27 1 0.0985 -1.3254 1.6684 28 1 -0.6749 -2.6381 0.7455 29 1 1.3490 -2.9458 3.0127 30 1 -0.3805 -3.3655 3.0687 31 1 1.9499 -5.8010 3.2734 32 1 1.6525 -8.8693 7.0207 33 1 -0.7976 -10.3589 5.7505 34 1 0.3848 -11.0659 6.9769 35 1 -0.2606 -9.2615 8.6395 36 1 -1.4428 -8.5538 7.4136 37 1 3.1748 -5.9341 -0.0740 38 1 1.0403 -4.0661 -0.8296 39 1 2.7344 -3.5170 -0.7538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099812792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:42 Heat of formation + Delta-G solvation = -9.669185 kcal Electronic energy + Delta-G solvation = -21075.527739 eV Core-core repulsion = 17792.064199 eV Total energy + Delta-G solvation = -3283.463540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21017 -39.46750 -38.49125 -37.00185 -35.88025 -34.15050 -33.52910 -31.72238 -30.21652 -27.40717 -25.71960 -24.11003 -23.67679 -23.30605 -22.51274 -21.38652 -19.81063 -18.79285 -18.06382 -17.71444 -17.48295 -16.79675 -16.21175 -16.06696 -15.77781 -15.67296 -15.19102 -14.99780 -14.55661 -13.92996 -13.71476 -13.55313 -13.30103 -13.07423 -12.97505 -12.68599 -12.50482 -12.43637 -12.31494 -12.16877 -12.09768 -11.91239 -11.71292 -11.29961 -11.08889 -11.05562 -10.78710 -10.57649 -10.18047 -8.78259 -7.90756 -5.38504 0.37289 1.15426 1.48805 1.51424 1.58260 1.92103 2.23806 2.49246 3.02329 3.07566 3.13772 3.27463 3.60123 3.80319 3.82533 3.99488 4.00826 4.02376 4.17275 4.35675 4.44072 4.49790 4.63110 4.76241 4.81093 4.88863 4.96301 4.98742 5.08933 5.10271 5.20944 5.29544 5.35630 5.59146 5.64737 6.10259 6.32875 6.34101 6.86928 6.99596 7.08614 7.76890 8.29766 9.16576 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031259 B = 0.003325 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.522419 B = 8419.309413 C = 8784.582114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.298 1.298 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.267 4.267 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.131 4.131 12 C 0.168 3.832 13 H 0.061 0.939 14 N -0.686 5.686 15 C 0.630 3.370 16 O -0.575 6.575 17 C -0.264 4.264 18 C -0.023 4.023 19 C -0.085 4.085 20 C -0.151 4.151 21 C -0.155 4.155 22 C 0.103 3.897 23 H 0.077 0.923 24 O -0.572 6.572 25 C 0.118 3.882 26 H 0.251 0.749 27 H 0.065 0.935 28 H -0.007 1.007 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.416 0.584 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.398 0.602 38 H 0.014 0.986 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 -18.121 13.498 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.224 1.224 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.397 4.397 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.171 4.171 12 C 0.064 3.936 13 H 0.079 0.921 14 N -0.335 5.335 15 C 0.418 3.582 16 O -0.456 6.456 17 C -0.267 4.267 18 C -0.026 4.026 19 C -0.102 4.102 20 C -0.188 4.188 21 C -0.191 4.191 22 C 0.042 3.958 23 H 0.095 0.905 24 O -0.379 6.379 25 C -0.009 4.009 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.011 0.989 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.253 0.747 32 H 0.183 0.817 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.032 0.968 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.750 -17.982 13.501 23.210 hybrid contribution 0.581 1.413 -0.750 1.702 sum 6.332 -16.569 12.751 21.845 Atomic orbital electron populations 1.70197 1.06965 1.26191 1.54892 1.25899 0.95988 1.01910 1.00853 0.85276 0.77462 0.78756 0.78539 1.22448 1.20047 1.19821 1.19544 0.93287 0.85497 1.41343 0.90406 1.44278 1.35708 1.02232 1.50598 1.20551 0.87910 0.97702 0.88497 1.22357 1.01403 0.94182 0.99154 1.20802 0.97889 0.88443 0.86515 0.92113 1.45694 1.09584 1.43342 1.34925 1.14952 0.84510 0.78679 0.80055 1.90832 1.24126 1.65592 1.65077 1.20405 1.04971 1.01885 0.99470 1.22180 0.95798 0.92228 0.92356 1.19396 1.00931 0.95665 0.94202 1.23252 1.01785 0.92029 1.01709 1.23257 0.96901 1.01451 0.97530 1.22407 0.95430 0.83316 0.94671 0.90513 1.86455 1.52255 1.28409 1.70821 1.21780 0.98885 0.86135 0.94056 0.93985 0.91675 0.98880 0.90882 0.92393 0.74721 0.81719 0.89386 0.84444 0.84543 0.89497 0.75215 0.96838 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.73 11.19 21.65 0.24 -55.48 16 2 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 3 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 4 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.27 -14.19 9.58 84.03 0.81 -13.38 16 8 H 0.08 3.89 7.89 -2.91 -0.02 3.87 16 9 N -0.60 -29.84 2.99 -698.24 -2.09 -31.92 16 10 C 0.18 9.01 5.31 86.36 0.46 9.47 16 11 C -0.13 -5.32 5.65 30.67 0.17 -5.15 16 12 C 0.17 6.23 2.12 45.02 0.10 6.33 16 13 H 0.06 2.66 7.57 -2.39 -0.02 2.64 16 14 N -0.69 -21.77 4.91 -450.00 -2.21 -23.98 16 15 C 0.63 22.62 7.61 85.49 0.65 23.27 16 16 O -0.57 -25.70 16.75 -4.09 -0.07 -25.77 16 17 C -0.26 -7.85 13.61 30.02 0.41 -7.44 16 18 C -0.02 -0.53 13.47 31.16 0.42 -0.11 16 19 C -0.08 -1.10 6.22 -12.58 -0.08 -1.18 16 20 C -0.15 -1.50 10.21 30.62 0.31 -1.18 16 21 C -0.15 -1.59 10.21 30.62 0.31 -1.27 16 22 C 0.10 3.35 3.16 30.82 0.10 3.45 16 23 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 24 O -0.57 -15.82 13.16 -148.98 -1.96 -17.79 16 25 C 0.12 4.71 6.17 86.51 0.53 5.25 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.06 3.63 6.04 -2.39 -0.01 3.62 16 28 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.42 10.48 8.57 -92.71 -0.79 9.68 16 32 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.40 7.13 9.09 -74.06 -0.67 6.45 16 38 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 Total: -1.00 -73.74 334.95 0.17 -73.57 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.39 Total: 19.79 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 4.61 Total: 15.65 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.05 Total: -111.38 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -2.03 Total: -43.56 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -73.74 0.17 -73.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099812792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.904 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds