Wall clock time and date at job start Tue Mar 31 2020 00:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00023 * 2 1 4 4 H 1.48493 * 109.47027 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46936 * 119.99928 * 3 2 1 6 6 H 1.48503 * 109.47150 * 239.99752 * 3 2 1 7 7 C 1.38813 * 120.00093 * 179.72462 * 2 1 3 8 8 H 1.07999 * 120.00118 * 204.39712 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.39579 * 7 2 1 10 10 C 1.46924 * 120.62740 * 29.03998 * 9 7 2 11 11 C 1.53618 * 108.54213 * 126.37065 * 10 9 7 12 12 C 1.53043 * 109.24721 * 54.85351 * 11 10 9 13 13 H 1.08998 * 109.45822 * 58.52648 * 12 11 10 14 14 N 1.46490 * 109.46148 * 178.49214 * 12 11 10 15 15 C 1.34772 * 120.00237 * 275.06462 * 14 12 11 16 16 O 1.21613 * 119.99781 * 0.02562 * 15 14 12 17 17 C 1.43205 * 120.00264 * 180.02562 * 15 14 12 18 18 C 9.69974 * 88.73496 * 217.87563 * 2 1 3 19 19 C 9.05286 * 134.94677 * 234.29764 * 9 1 2 20 20 C 1.53002 * 117.49937 * 317.39311 * 19 18 17 21 21 C 1.53004 * 117.49607 * 248.73163 * 19 18 17 22 22 C 1.53039 * 109.53328 * 298.51233 * 12 11 10 23 23 H 1.09004 * 109.50100 * 301.41027 * 22 12 11 24 24 O 1.42902 * 109.49682 * 181.31282 * 22 12 11 25 25 C 1.46921 * 120.62829 * 209.31821 * 9 7 2 26 26 H 0.96990 * 119.99600 * 185.77575 * 1 2 3 27 27 H 1.09000 * 109.58484 * 246.19820 * 10 9 7 28 28 H 1.08994 * 109.59247 * 6.62185 * 10 9 7 29 29 H 1.09003 * 109.63271 * 294.85835 * 11 10 9 30 30 H 1.09005 * 109.43442 * 174.72004 * 11 10 9 31 31 H 0.97003 * 120.00457 * 95.07024 * 14 12 11 32 32 H 1.09003 * 115.54800 * 103.06896 * 19 18 17 33 33 H 1.08994 * 117.49836 * 0.02562 * 20 19 18 34 34 H 1.08996 * 117.49344 * 145.02140 * 20 19 18 35 35 H 1.08993 * 117.49868 * 214.98043 * 21 19 18 36 36 H 1.08997 * 117.49856 * 359.97438 * 21 19 18 37 37 H 0.96702 * 113.99821 * 180.16166 * 24 22 12 38 38 H 1.09000 * 109.59108 * 353.37006 * 25 9 7 39 39 H 1.08998 * 109.58651 * 113.79987 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0058 8 1 3.0180 -1.2420 0.3923 9 7 1.4173 -2.3375 -0.4786 10 6 0.3981 -2.2577 -1.5339 11 6 0.8171 -3.1806 -2.6884 12 6 1.0507 -4.5926 -2.1461 13 1 0.1384 -4.9552 -1.6724 14 7 1.4155 -5.4848 -3.2492 15 6 0.4531 -6.0672 -3.9914 16 8 -0.7183 -5.8516 -3.7457 17 6 0.8097 -6.9398 -5.0694 18 6 1.1021 -7.6546 -5.9537 19 6 1.4686 -8.5512 -7.0620 20 6 0.9818 -9.9999 -6.9894 21 6 2.4606 -9.6767 -6.7616 22 6 2.1831 -4.5646 -1.1170 23 1 3.0894 -4.1787 -1.5837 24 8 2.4211 -5.8882 -0.6338 25 6 1.7837 -3.6579 0.0514 26 1 -0.4849 -0.8357 0.0845 27 1 -0.5649 -2.5788 -1.1369 28 1 0.3237 -1.2314 -1.8933 29 1 1.7362 -2.8077 -3.1403 30 1 0.0263 -3.2052 -3.4383 31 1 2.3498 -5.6566 -3.4454 32 1 1.5186 -8.0857 -8.0464 33 1 0.3897 -10.2888 -6.1211 34 1 0.7117 -10.4875 -7.9260 35 1 3.1628 -9.9520 -7.5484 36 1 2.8421 -9.7529 -5.7434 37 1 3.1263 -5.9453 0.0255 38 1 2.6238 -3.5557 0.7383 39 1 0.9314 -4.0908 0.5751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099812794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:45 Heat of formation + Delta-G solvation = 10.940357 kcal Electronic energy + Delta-G solvation = -21143.085656 eV Core-core repulsion = 17860.515813 eV Total energy + Delta-G solvation = -3282.569843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86141 -38.12542 -37.85823 -35.63716 -34.48126 -32.96262 -31.89545 -30.04951 -28.57866 -25.67148 -24.38399 -22.85302 -22.76823 -22.18073 -21.18693 -19.80275 -18.55427 -17.51804 -16.86992 -16.86097 -16.17108 -15.43830 -14.87931 -14.61611 -14.51550 -13.82411 -13.68592 -13.60141 -13.06847 -12.89116 -12.45709 -12.37895 -12.21514 -11.97951 -11.91003 -11.53789 -10.98030 -10.89998 -10.74112 -10.47655 -10.37865 -10.33308 -10.09747 -10.00215 -9.91837 -9.79244 -9.36363 -8.88518 -8.42158 -6.99334 -6.14362 -3.34330 1.53313 2.00881 3.04541 3.45732 3.49001 3.52771 3.56442 3.67435 4.01842 4.31100 4.36551 4.52439 4.55123 4.70648 5.12942 5.18014 5.19604 5.24665 5.38198 5.43366 5.45714 5.61045 5.63201 5.64266 5.81722 5.91451 6.10584 6.32391 6.35643 6.48642 6.59669 6.66723 6.93993 7.08744 7.10523 7.55592 7.79102 7.93843 8.22979 8.49518 9.01009 9.74837 10.17618 11.14385 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.003353 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.214781 B = 8348.349041 C = 8581.585124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.021 4.021 3 Si 1.067 2.933 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.357 4.357 8 H 0.057 0.943 9 N -0.595 5.595 10 C 0.152 3.848 11 C -0.143 4.143 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.701 5.701 15 C 0.629 3.371 16 O -0.524 6.524 17 C -0.204 4.204 18 C -0.068 4.068 19 C -0.062 4.062 20 C -0.162 4.162 21 C -0.161 4.161 22 C 0.081 3.919 23 H 0.059 0.941 24 O -0.571 6.571 25 C 0.123 3.877 26 H 0.271 0.729 27 H 0.025 0.975 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.401 0.599 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.375 0.625 38 H 0.063 0.937 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.043 -16.510 -11.391 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.224 4.224 3 Si 0.896 3.104 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.486 4.486 8 H 0.075 0.925 9 N -0.320 5.320 10 C 0.025 3.975 11 C -0.184 4.184 12 C 0.060 3.940 13 H 0.109 0.891 14 N -0.350 5.350 15 C 0.415 3.585 16 O -0.402 6.402 17 C -0.207 4.207 18 C -0.070 4.070 19 C -0.080 4.080 20 C -0.199 4.199 21 C -0.198 4.198 22 C 0.020 3.980 23 H 0.076 0.924 24 O -0.375 6.375 25 C -0.005 4.005 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.153 0.847 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.222 0.778 38 H 0.081 0.919 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.545 -14.794 -11.641 19.624 hybrid contribution 1.139 -1.621 0.380 2.017 sum 6.684 -16.415 -11.261 20.998 Atomic orbital electron populations 1.70784 1.06618 1.30539 1.47098 1.25937 0.96533 1.01613 0.98272 0.83505 0.74776 0.75913 0.76208 1.20993 1.21912 1.21959 1.19940 0.97192 0.87918 1.43579 0.92526 1.44119 1.46965 1.01203 1.39731 1.21087 0.90698 0.98916 0.86770 1.22586 1.01800 0.93723 1.00260 1.21063 0.98301 0.89869 0.84816 0.89078 1.45935 1.09140 1.47193 1.32749 1.14681 0.85446 0.78638 0.79726 1.90867 1.17971 1.62173 1.69166 1.20830 1.02210 1.00049 0.97657 1.21288 0.97982 0.94207 0.93527 1.18875 1.06470 0.87956 0.94675 1.23124 0.97378 0.94957 1.04397 1.23123 0.92846 0.99877 1.03931 1.22757 0.96913 0.82675 0.95699 0.92351 1.86481 1.59970 1.28726 1.62328 1.21530 0.98868 0.87024 0.93052 0.91841 0.95741 0.89616 0.91772 0.91549 0.76542 0.84678 0.88071 0.87411 0.87405 0.88074 0.77814 0.91884 0.95384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.99 12.46 55.49 0.69 -26.30 16 2 C -0.02 -0.57 4.69 -17.43 -0.08 -0.65 16 3 Si 1.07 24.66 29.98 -169.99 -5.10 19.57 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.36 -9.67 9.48 -15.06 -0.14 -9.81 16 8 H 0.06 1.52 7.94 -52.49 -0.42 1.10 16 9 N -0.60 -14.49 2.83 -172.06 -0.49 -14.98 16 10 C 0.15 3.55 4.72 -3.49 -0.02 3.53 16 11 C -0.14 -2.80 5.67 -26.39 -0.15 -2.95 16 12 C 0.16 2.96 2.11 -67.89 -0.14 2.81 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 14 N -0.70 -11.08 4.91 -56.21 -0.28 -11.36 16 15 C 0.63 10.91 7.61 -14.33 -0.11 10.80 16 16 O -0.52 -11.03 16.75 5.27 0.09 -10.94 16 17 C -0.20 -3.03 13.61 -38.83 -0.53 -3.56 16 18 C -0.07 -0.82 13.47 -37.12 -0.50 -1.32 16 19 C -0.06 -0.50 6.21 -93.41 -0.58 -1.08 16 20 C -0.16 -1.05 10.21 -26.69 -0.27 -1.32 16 21 C -0.16 -1.00 10.21 -26.69 -0.27 -1.27 16 22 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 O -0.57 -8.53 13.16 -35.23 -0.46 -8.99 16 25 C 0.12 2.49 6.14 -3.71 -0.02 2.47 16 26 H 0.27 8.11 6.70 -40.82 -0.27 7.83 16 27 H 0.02 0.60 7.85 -51.93 -0.41 0.19 16 28 H 0.09 2.23 6.38 -51.93 -0.33 1.89 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.40 5.31 8.57 -40.82 -0.35 4.96 16 32 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.38 4.00 9.08 45.56 0.41 4.41 16 38 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -33.18 334.02 -8.19 -41.37 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.77 Total: 7.68 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.90 Total: -1.08 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.07 Total: -52.63 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.38 Total: -19.93 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.10 Total: 19.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.18 -8.19 -41.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099812794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.310 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds