Wall clock time and date at job start Tue Mar 31 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00023 * 2 1 4 4 H 1.48493 * 109.47027 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46936 * 119.99928 * 3 2 1 6 6 H 1.48503 * 109.47150 * 239.99752 * 3 2 1 7 7 C 1.38813 * 120.00093 * 179.72462 * 2 1 3 8 8 H 1.07999 * 120.00118 * 204.39712 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.39579 * 7 2 1 10 10 C 1.46924 * 120.62740 * 29.03998 * 9 7 2 11 11 C 1.53618 * 108.54213 * 126.37065 * 10 9 7 12 12 C 1.53043 * 109.24721 * 54.85351 * 11 10 9 13 13 H 1.08998 * 109.45822 * 58.52648 * 12 11 10 14 14 N 1.46490 * 109.46148 * 178.49214 * 12 11 10 15 15 C 1.34772 * 120.00237 * 275.06462 * 14 12 11 16 16 O 1.21613 * 119.99781 * 0.02562 * 15 14 12 17 17 C 1.43205 * 120.00264 * 180.02562 * 15 14 12 18 18 C 9.69974 * 88.73496 * 217.87563 * 2 1 3 19 19 C 9.05286 * 134.94677 * 234.29764 * 9 1 2 20 20 C 1.53002 * 117.49937 * 317.39311 * 19 18 17 21 21 C 1.53004 * 117.49607 * 248.73163 * 19 18 17 22 22 C 1.53039 * 109.53328 * 298.51233 * 12 11 10 23 23 H 1.09004 * 109.50100 * 301.41027 * 22 12 11 24 24 O 1.42902 * 109.49682 * 181.31282 * 22 12 11 25 25 C 1.46921 * 120.62829 * 209.31821 * 9 7 2 26 26 H 0.96990 * 119.99600 * 185.77575 * 1 2 3 27 27 H 1.09000 * 109.58484 * 246.19820 * 10 9 7 28 28 H 1.08994 * 109.59247 * 6.62185 * 10 9 7 29 29 H 1.09003 * 109.63271 * 294.85835 * 11 10 9 30 30 H 1.09005 * 109.43442 * 174.72004 * 11 10 9 31 31 H 0.97003 * 120.00457 * 95.07024 * 14 12 11 32 32 H 1.09003 * 115.54800 * 103.06896 * 19 18 17 33 33 H 1.08994 * 117.49836 * 0.02562 * 20 19 18 34 34 H 1.08996 * 117.49344 * 145.02140 * 20 19 18 35 35 H 1.08993 * 117.49868 * 214.98043 * 21 19 18 36 36 H 1.08997 * 117.49856 * 359.97438 * 21 19 18 37 37 H 0.96702 * 113.99821 * 180.16166 * 24 22 12 38 38 H 1.09000 * 109.59108 * 353.37006 * 25 9 7 39 39 H 1.08998 * 109.58651 * 113.79987 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0058 8 1 3.0180 -1.2420 0.3923 9 7 1.4173 -2.3375 -0.4786 10 6 0.3981 -2.2577 -1.5339 11 6 0.8171 -3.1806 -2.6884 12 6 1.0507 -4.5926 -2.1461 13 1 0.1384 -4.9552 -1.6724 14 7 1.4155 -5.4848 -3.2492 15 6 0.4531 -6.0672 -3.9914 16 8 -0.7183 -5.8516 -3.7457 17 6 0.8097 -6.9398 -5.0694 18 6 1.1021 -7.6546 -5.9537 19 6 1.4686 -8.5512 -7.0620 20 6 0.9818 -9.9999 -6.9894 21 6 2.4606 -9.6767 -6.7616 22 6 2.1831 -4.5646 -1.1170 23 1 3.0894 -4.1787 -1.5837 24 8 2.4211 -5.8882 -0.6338 25 6 1.7837 -3.6579 0.0514 26 1 -0.4849 -0.8357 0.0845 27 1 -0.5649 -2.5788 -1.1369 28 1 0.3237 -1.2314 -1.8933 29 1 1.7362 -2.8077 -3.1403 30 1 0.0263 -3.2052 -3.4383 31 1 2.3498 -5.6566 -3.4454 32 1 1.5186 -8.0857 -8.0464 33 1 0.3897 -10.2888 -6.1211 34 1 0.7117 -10.4875 -7.9260 35 1 3.1628 -9.9520 -7.5484 36 1 2.8421 -9.7529 -5.7434 37 1 3.1263 -5.9453 0.0255 38 1 2.6238 -3.5557 0.7383 39 1 0.9314 -4.0908 0.5751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099812794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:44 Heat of formation + Delta-G solvation = -13.337742 kcal Electronic energy + Delta-G solvation = -21144.138433 eV Core-core repulsion = 17860.515813 eV Total energy + Delta-G solvation = -3283.622621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29990 -39.61563 -38.50958 -37.24229 -35.98999 -34.21013 -33.54405 -31.76837 -30.22521 -27.29841 -25.73506 -24.28037 -23.66171 -23.30891 -22.57361 -21.43475 -19.95818 -19.33984 -18.22930 -17.67573 -17.61205 -16.43733 -16.38522 -16.16063 -15.85355 -15.47234 -15.40855 -15.25267 -14.70336 -14.07946 -13.75360 -13.65317 -13.54569 -13.20520 -12.76795 -12.64743 -12.51660 -12.43609 -12.34478 -12.20734 -11.93136 -11.83120 -11.66549 -11.28481 -11.19624 -11.13838 -10.73838 -10.50873 -10.28356 -9.02542 -8.29497 -5.48388 0.37122 1.02303 1.60048 1.67393 1.85023 1.86290 2.33575 2.62621 2.90552 2.97689 3.09203 3.21317 3.45928 3.69556 3.81182 3.90133 3.97846 4.01584 4.04826 4.21673 4.29166 4.40491 4.50628 4.65578 4.75959 4.76505 4.84176 4.94634 4.95696 5.05487 5.07591 5.19053 5.20628 5.24931 5.80587 6.07218 6.27369 6.33388 6.76201 6.93227 6.97750 7.69338 8.13655 8.96383 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.003353 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.214781 B = 8348.349041 C = 8581.585124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.075 4.075 3 Si 1.118 2.882 4 H -0.296 1.296 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.359 4.359 8 H 0.062 0.938 9 N -0.611 5.611 10 C 0.160 3.840 11 C -0.127 4.127 12 C 0.169 3.831 13 H 0.063 0.937 14 N -0.686 5.686 15 C 0.632 3.368 16 O -0.573 6.573 17 C -0.266 4.266 18 C -0.020 4.020 19 C -0.088 4.088 20 C -0.156 4.156 21 C -0.146 4.146 22 C 0.104 3.896 23 H 0.075 0.925 24 O -0.570 6.570 25 C 0.120 3.880 26 H 0.253 0.747 27 H 0.002 0.998 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.416 0.584 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.398 0.602 38 H 0.075 0.925 39 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 -18.348 -13.116 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.272 4.272 3 Si 0.942 3.058 4 H -0.222 1.222 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.488 4.488 8 H 0.080 0.920 9 N -0.336 5.336 10 C 0.033 3.967 11 C -0.167 4.167 12 C 0.064 3.936 13 H 0.081 0.919 14 N -0.336 5.336 15 C 0.420 3.580 16 O -0.454 6.454 17 C -0.269 4.269 18 C -0.022 4.022 19 C -0.106 4.106 20 C -0.193 4.193 21 C -0.183 4.183 22 C 0.043 3.957 23 H 0.093 0.907 24 O -0.378 6.378 25 C -0.007 4.007 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.253 0.747 32 H 0.179 0.821 33 H 0.107 0.893 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 8.451 -16.691 -13.358 22.988 hybrid contribution 0.285 -1.225 0.898 1.546 sum 8.737 -17.916 -12.460 23.506 Atomic orbital electron populations 1.70911 1.07812 1.29476 1.50207 1.27342 0.96517 1.05199 0.98101 0.82828 0.73780 0.71710 0.77519 1.22210 1.19814 1.20214 1.20253 0.97296 0.88849 1.42380 0.92026 1.44315 1.46862 1.02206 1.40262 1.20848 0.89979 0.97963 0.87873 1.22340 1.01955 0.93950 0.98480 1.20757 0.97944 0.89094 0.85771 0.91888 1.45672 1.09845 1.46291 1.31744 1.14938 0.84796 0.78367 0.79945 1.90831 1.19900 1.64007 1.70684 1.20393 1.05600 1.02025 0.98915 1.22178 0.95186 0.92375 0.92487 1.19346 1.08789 0.88276 0.94163 1.23260 0.97650 0.93144 1.05241 1.23265 0.93067 0.97381 1.04559 1.22281 0.96648 0.82971 0.93829 0.90682 1.86458 1.61263 1.26855 1.63200 1.21689 0.98706 0.85695 0.94587 0.93696 0.97977 0.92635 0.90685 0.91918 0.74681 0.82147 0.89328 0.84821 0.84629 0.88784 0.75182 0.90649 0.96755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 12.46 21.65 0.27 -57.56 16 2 C -0.08 -4.22 4.69 84.86 0.40 -3.82 16 3 Si 1.12 49.78 29.98 68.60 2.06 51.84 16 4 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.36 -19.43 9.48 84.03 0.80 -18.63 16 8 H 0.06 3.24 7.94 -2.91 -0.02 3.22 16 9 N -0.61 -30.18 2.83 -698.28 -1.98 -32.15 16 10 C 0.16 7.82 4.72 86.51 0.41 8.23 16 11 C -0.13 -5.07 5.67 30.82 0.17 -4.90 16 12 C 0.17 6.16 2.11 45.02 0.10 6.25 16 13 H 0.06 2.69 7.58 -2.39 -0.02 2.67 16 14 N -0.69 -21.38 4.91 -450.01 -2.21 -23.59 16 15 C 0.63 22.28 7.61 85.49 0.65 22.93 16 16 O -0.57 -25.18 16.75 -4.07 -0.07 -25.25 16 17 C -0.27 -7.79 13.61 30.02 0.41 -7.38 16 18 C -0.02 -0.45 13.47 31.12 0.42 -0.03 16 19 C -0.09 -1.14 6.21 -12.60 -0.08 -1.22 16 20 C -0.16 -1.51 10.21 30.62 0.31 -1.20 16 21 C -0.15 -1.26 10.21 30.62 0.31 -0.94 16 22 C 0.10 3.38 3.14 30.67 0.10 3.48 16 23 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 24 O -0.57 -15.73 13.16 -148.98 -1.96 -17.69 16 25 C 0.12 4.81 6.14 86.37 0.53 5.34 16 26 H 0.25 15.99 6.70 -92.72 -0.62 15.37 16 27 H 0.00 0.12 7.85 -2.39 -0.02 0.10 16 28 H 0.06 3.03 6.38 -2.39 -0.02 3.01 16 29 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.42 10.34 8.57 -92.71 -0.79 9.55 16 32 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.40 7.20 9.08 -74.06 -0.67 6.53 16 38 H 0.08 2.82 7.93 -2.39 -0.02 2.80 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -75.02 334.02 0.40 -74.62 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.24 Total: 21.67 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.53 Total: 8.11 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.92 Total: -113.30 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -2.03 Total: -42.94 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.06 Total: 51.84 kcal Total: -75.02 0.40 -74.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099812794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.283 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds