Wall clock time and date at job start Tue Mar 31 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48502 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 300.00131 * 3 2 1 6 6 H 1.48498 * 109.46823 * 60.00028 * 3 2 1 7 7 C 1.38820 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 C 1.53777 * 113.61427 * 205.00024 * 10 9 7 12 12 C 1.53777 * 87.08408 * 219.93587 * 11 10 9 13 13 C 1.52997 * 113.61529 * 139.98256 * 12 11 10 14 14 N 1.46503 * 109.47101 * 176.53277 * 13 12 11 15 15 C 1.34777 * 119.99907 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99946 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.46955 * 180.02562 * 17 15 14 19 19 C 1.41381 * 126.57424 * 90.00355 * 18 17 15 20 20 C 1.34520 * 106.83580 * 179.72986 * 19 18 17 21 21 O 1.34302 * 108.42210 * 0.26485 * 20 19 18 22 22 C 1.34302 * 109.47622 * 359.97438 * 21 20 19 23 23 C 1.53781 * 87.16999 * 25.39224 * 12 11 10 24 24 H 0.96998 * 119.99497 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00437 * 0.02562 * 9 7 2 26 26 H 1.09000 * 112.84829 * 336.20139 * 10 9 7 27 27 H 1.09008 * 113.61333 * 105.38741 * 11 10 9 28 28 H 1.08999 * 113.61903 * 334.49221 * 11 10 9 29 29 H 1.09002 * 113.61569 * 270.80559 * 12 11 10 30 30 H 1.08995 * 109.47064 * 56.52841 * 13 12 11 31 31 H 1.09004 * 109.47011 * 296.53338 * 13 12 11 32 32 H 0.96996 * 119.99724 * 0.02562 * 14 13 12 33 33 H 1.09007 * 109.46960 * 60.00376 * 17 15 14 34 34 H 1.08999 * 109.46970 * 300.00269 * 17 15 14 35 35 H 1.08002 * 126.58570 * 359.97438 * 19 18 17 36 36 H 1.08005 * 125.78720 * 180.29666 * 20 19 18 37 37 H 1.07999 * 125.79201 * 179.97438 * 22 21 20 38 38 H 1.08998 * 113.61653 * 89.15719 * 23 12 11 39 39 H 1.09001 * 113.61785 * 220.05905 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.2596 -4.8285 -0.5971 12 6 1.8499 -5.6984 0.5252 13 6 0.8484 -6.6873 1.1253 14 7 1.5237 -7.5218 2.1223 15 6 0.8337 -8.4704 2.7860 16 8 -0.3463 -8.6334 2.5575 17 6 1.5285 -9.3292 3.8110 18 6 0.5420 -10.3031 4.4022 19 6 0.2507 -11.6016 3.9246 20 6 -0.6778 -12.1204 4.7481 21 8 -0.9670 -11.2079 5.6902 22 6 -0.2325 -10.1027 5.4835 23 6 2.0038 -4.4051 1.3428 24 1 -0.4849 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 3.0652 -3.5638 -0.4077 27 1 1.5894 -5.1196 -1.5944 28 1 0.1793 -4.7006 -0.5281 29 1 2.7996 -6.1646 0.2627 30 1 0.4447 -7.3201 0.3351 31 1 0.0362 -6.1379 1.6014 32 1 2.4673 -7.3911 2.3051 33 1 1.9329 -8.6965 4.6012 34 1 2.3401 -9.8789 3.3344 35 1 0.6922 -12.0857 3.0660 36 1 -1.1161 -13.1041 4.6659 37 1 -0.2569 -9.2064 6.0856 38 1 1.1274 -4.1611 1.9432 39 1 2.9336 -4.3546 1.9093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100271599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:20 Heat of formation + Delta-G solvation = 3.817069 kcal Electronic energy + Delta-G solvation = -20360.470014 eV Core-core repulsion = 17077.591282 eV Total energy + Delta-G solvation = -3282.878732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.72635 -39.75033 -38.43111 -34.71390 -34.13533 -33.28347 -30.80368 -30.20110 -28.54851 -26.63075 -25.09923 -23.84781 -21.80521 -21.43251 -20.98937 -20.14833 -19.05530 -17.72314 -17.18120 -16.95823 -16.00962 -15.95887 -15.57431 -14.98272 -14.75806 -14.64856 -13.81852 -13.78105 -13.44222 -13.06374 -12.99126 -12.84876 -12.63654 -11.93206 -11.85203 -11.71038 -11.39415 -11.23621 -10.86349 -10.53228 -10.26988 -10.14154 -10.06243 -9.83789 -9.70371 -9.47571 -9.01012 -8.88208 -8.71360 -6.97465 -5.79581 -3.08462 1.59586 2.33906 2.62150 2.96179 3.30726 3.41455 3.46869 3.49369 4.50142 4.56305 4.57172 4.75165 4.84425 4.97705 5.05592 5.15641 5.21780 5.23640 5.45630 5.47645 5.51148 5.78231 5.82472 5.85148 5.92833 5.96269 6.08225 6.25761 6.28022 6.31164 6.35382 6.46418 6.58170 6.82013 6.91810 7.10340 7.48884 7.68267 8.22002 8.38996 9.50054 10.08481 10.42583 11.42881 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040234 B = 0.002485 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.770397 B =11266.709741 C =11491.110989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.143 4.143 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.727 5.727 15 C 0.508 3.492 16 O -0.535 6.535 17 C -0.071 4.071 18 C -0.164 4.164 19 C -0.199 4.199 20 C -0.046 4.046 21 O -0.177 6.177 22 C -0.026 4.026 23 C -0.161 4.161 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.201 0.799 37 H 0.200 0.800 38 H 0.077 0.923 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -23.411 8.388 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.379 5.379 15 C 0.294 3.706 16 O -0.411 6.411 17 C -0.111 4.111 18 C -0.166 4.166 19 C -0.218 4.218 20 C -0.113 4.113 21 O -0.073 6.073 22 C -0.094 4.094 23 C -0.202 4.202 24 H 0.065 0.935 25 H 0.219 0.781 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.163 0.837 36 H 0.217 0.783 37 H 0.217 0.783 38 H 0.096 0.904 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.611 -23.368 8.422 25.100 hybrid contribution 0.717 1.004 -0.122 1.240 sum 4.328 -22.363 8.300 24.243 Atomic orbital electron populations 1.69674 1.05146 1.25646 1.57521 1.24784 0.95534 0.97822 1.02871 0.86116 0.78771 0.84087 0.77204 1.20533 1.21837 1.21853 1.19348 0.91089 0.84233 1.42802 0.91039 1.42426 1.05783 0.99905 1.86964 1.21551 0.95292 0.85036 0.92765 1.23444 1.01034 0.97029 0.96729 1.22635 0.98386 0.94410 0.99190 1.21415 0.95384 0.91957 0.90335 1.46065 1.13775 1.36380 1.41667 1.20588 0.87480 0.80533 0.82020 1.90727 1.15818 1.68942 1.65610 1.20002 0.97129 0.96047 0.97943 1.19797 1.02539 0.96060 0.98188 1.21661 1.02046 0.95646 1.02479 1.23948 1.01134 0.95412 0.90816 1.84060 1.54054 1.22586 1.46577 1.23811 0.94604 0.90445 1.00524 1.23968 1.01295 0.95005 0.99938 0.93483 0.78066 0.90698 0.92009 0.90125 0.89408 0.91911 0.91325 0.76629 0.88028 0.88016 0.83680 0.78255 0.78298 0.90394 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.73 5.41 -52.55 -0.28 -18.02 16 10 C 0.17 3.17 4.48 -67.03 -0.30 2.87 16 11 C -0.14 -2.25 7.39 -25.92 -0.19 -2.45 16 12 C -0.13 -1.66 3.75 -89.81 -0.34 -2.00 16 13 C 0.13 1.73 5.50 -4.04 -0.02 1.70 16 14 N -0.73 -7.83 5.56 -60.29 -0.33 -8.17 16 15 C 0.51 6.17 7.82 -10.98 -0.09 6.09 16 16 O -0.53 -9.02 16.03 5.55 0.09 -8.93 16 17 C -0.07 -0.60 6.22 -29.03 -0.18 -0.78 16 18 C -0.16 -1.69 4.66 -104.74 -0.49 -2.18 16 19 C -0.20 -1.95 10.87 -39.70 -0.43 -2.38 16 20 C -0.05 -0.41 12.09 29.42 0.36 -0.05 16 21 O -0.18 -1.88 10.65 5.71 0.06 -1.82 16 22 C -0.03 -0.26 12.01 29.42 0.35 0.09 16 23 C -0.16 -2.60 7.45 -25.83 -0.19 -2.80 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.39 10.24 7.92 -40.82 -0.32 9.92 16 26 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 27 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 32 H 0.40 3.16 8.47 -40.82 -0.35 2.81 16 33 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.20 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.08 1.41 7.92 -51.93 -0.41 0.99 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -34.46 336.81 -7.14 -41.60 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.68 Total: 9.72 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -1.77 Total: -9.24 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.11 Total: -53.64 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.15 Total: -10.75 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.46 -7.14 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100271599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.416 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds