Wall clock time and date at job start Tue Mar 31 2020 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48504 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47083 * 299.99910 * 3 2 1 6 6 H 1.48502 * 109.47241 * 60.00151 * 3 2 1 7 7 C 1.40027 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.41324 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.40587 * 119.78278 * 180.27342 * 9 7 2 11 11 C 1.38348 * 119.14834 * 180.25214 * 10 9 7 12 12 C 1.38634 * 118.67775 * 359.47952 * 11 10 9 13 13 C 1.39762 * 119.49294 * 0.25911 * 12 11 10 14 14 N 1.38828 * 119.58433 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.53001 * 109.47395 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.53751 * 65.00019 * 16 15 14 18 18 C 1.53173 * 109.54299 * 304.82695 * 16 15 14 19 19 C 1.53105 * 109.15986 * 183.23819 * 18 16 15 20 20 O 1.42905 * 109.48583 * 57.46856 * 19 18 16 21 21 C 1.42890 * 114.10002 * 298.89419 * 20 19 18 22 22 C 1.53093 * 109.41905 * 61.15635 * 21 20 19 23 23 N 1.31977 * 120.83087 * 0.02562 * 13 12 11 24 24 H 0.97005 * 119.99769 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.42884 * 359.97438 * 10 9 7 26 26 H 1.08002 * 120.66517 * 179.76384 * 11 10 9 27 27 H 1.08000 * 120.25521 * 180.23148 * 12 11 10 28 28 H 0.96996 * 119.99781 * 179.97438 * 14 13 12 29 29 H 1.09003 * 109.47582 * 300.00134 * 15 14 13 30 30 H 1.09008 * 109.47482 * 59.99987 * 15 14 13 31 31 H 0.96702 * 114.00566 * 300.00323 * 17 16 15 32 32 H 1.08996 * 109.52508 * 303.05786 * 18 16 15 33 33 H 1.09007 * 109.52605 * 63.24318 * 18 16 15 34 34 H 1.09007 * 109.40443 * 297.49466 * 19 18 16 35 35 H 1.08998 * 109.49777 * 177.51045 * 19 18 16 36 36 H 1.09006 * 109.48386 * 301.17053 * 21 20 19 37 37 H 1.08998 * 109.49172 * 181.14462 * 21 20 19 38 38 H 1.09005 * 109.52531 * 182.48287 * 22 21 20 39 39 H 1.08997 * 109.57332 * 62.32542 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3963 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6514 0.0047 11 6 1.3032 -4.8418 -0.0006 12 6 -0.0823 -4.7944 -0.0001 13 6 -0.7284 -3.5551 0.0004 14 7 -2.1158 -3.5054 0.0005 15 6 -2.8932 -4.7471 -0.0005 16 6 -4.3865 -4.4139 0.0004 17 8 -4.7294 -3.7531 -1.2193 18 6 -4.7066 -3.4990 1.1864 19 6 -6.2145 -3.2369 1.2262 20 8 -6.9124 -4.4808 1.3156 21 6 -6.6881 -5.3564 0.2089 22 6 -5.1996 -5.7056 0.1296 23 7 -0.0362 -2.4314 -0.0002 24 1 -0.4850 0.8401 -0.0004 25 1 3.0883 -3.6555 0.0084 26 1 1.8219 -5.7892 -0.0006 27 1 -0.6580 -5.7082 -0.0004 28 1 -2.5704 -2.6486 0.0012 29 1 -2.6505 -5.3271 -0.8910 30 1 -2.6505 -5.3285 0.8890 31 1 -4.2529 -2.9244 -1.3652 32 1 -4.3976 -3.9824 2.1132 33 1 -4.1743 -2.5547 1.0722 34 1 -6.5156 -2.7157 0.3173 35 1 -6.4542 -2.6224 2.0939 36 1 -6.9954 -4.8631 -0.7132 37 1 -7.2688 -6.2690 0.3438 38 1 -5.0196 -6.3379 -0.7398 39 1 -4.9002 -6.2355 1.0338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116664537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:58 Heat of formation + Delta-G solvation = -61.683878 kcal Electronic energy + Delta-G solvation = -21826.773368 eV Core-core repulsion = 18541.054302 eV Total energy + Delta-G solvation = -3285.719066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08564 -38.24825 -36.87627 -34.56754 -33.25195 -32.12495 -31.21339 -30.41176 -29.08504 -26.50375 -25.40868 -23.76152 -22.81762 -21.46670 -20.44669 -20.06297 -17.40408 -17.08474 -16.63464 -16.06747 -15.59142 -15.20959 -14.89913 -14.68525 -14.59601 -14.32198 -13.78911 -13.23267 -13.14799 -12.93646 -12.76985 -12.41196 -12.05776 -11.91494 -11.79093 -11.38614 -11.23991 -11.00059 -10.90596 -10.66891 -10.53661 -10.44826 -10.07007 -9.92791 -9.54762 -9.43564 -8.94305 -7.94926 -7.55945 -6.58639 -6.37077 -4.50656 2.83431 3.09543 3.13901 3.19786 3.26474 3.79185 3.95618 4.00600 4.12281 4.64561 4.69645 4.75376 4.81349 4.92845 5.18260 5.36636 5.49281 5.51193 5.58934 5.69262 5.76375 5.86748 5.98629 6.02347 6.06735 6.12538 6.15821 6.53838 6.80715 6.85551 6.89309 7.10940 7.20726 7.53908 7.60470 7.76665 7.87640 8.11647 8.30619 8.58971 8.76392 9.07102 10.19883 10.36092 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.004450 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.973147 B = 6290.354475 C = 7251.948325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.314 4.314 11 C -0.032 4.032 12 C -0.366 4.366 13 C 0.410 3.590 14 N -0.738 5.738 15 C 0.119 3.881 16 C 0.126 3.874 17 O -0.557 6.557 18 C -0.181 4.181 19 C 0.066 3.934 20 O -0.386 6.386 21 C 0.065 3.935 22 C -0.139 4.139 23 N -0.531 5.531 24 H 0.268 0.732 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.391 0.609 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.381 0.619 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 -5.371 0.663 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.392 4.392 13 C 0.171 3.829 14 N -0.377 5.377 15 C -0.007 4.007 16 C 0.085 3.915 17 O -0.364 6.364 18 C -0.219 4.219 19 C -0.011 4.011 20 O -0.305 6.305 21 C -0.011 4.011 22 C -0.177 4.177 23 N -0.252 5.252 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.227 0.773 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.009 -5.201 0.757 13.109 hybrid contribution 1.394 0.705 -0.137 1.568 sum -10.615 -4.497 0.620 11.545 Atomic orbital electron populations 1.70155 1.07184 1.27194 1.29402 1.26041 0.94861 1.00932 0.93464 0.86321 0.80954 0.81362 0.78446 1.18423 1.19922 1.19942 1.19629 0.94214 0.89372 1.43377 0.89830 1.18205 0.86874 0.91870 0.86563 1.21547 0.98462 0.93462 1.20282 1.20600 0.93427 0.96412 0.95206 1.20602 0.94634 0.95454 1.28512 1.18476 0.84087 0.90333 0.90018 1.44064 1.02927 1.06287 1.84437 1.21723 0.89252 0.88295 1.01470 1.21397 0.93073 0.92805 0.84272 1.86456 1.68657 1.41207 1.40116 1.22841 0.97676 1.01624 0.99761 1.22511 0.90632 0.85851 1.02100 1.87892 1.69522 1.28447 1.44667 1.22490 0.94727 0.93969 0.89945 1.22122 0.96105 0.95851 1.03587 1.68195 1.07722 1.24256 1.25035 0.92043 0.88669 0.88913 0.89276 0.77345 0.92106 0.92282 0.77013 0.89945 0.89874 0.92629 0.89005 0.92336 0.89047 0.89890 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.70 11.46 55.55 0.64 -18.07 16 2 C 0.07 1.82 5.50 -17.35 -0.10 1.72 16 3 Si 0.90 18.53 29.56 -169.99 -5.02 13.50 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.43 -11.68 9.14 -37.74 -0.34 -12.02 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.29 8.07 6.55 -85.00 -0.56 7.52 16 10 C -0.31 -7.95 9.83 -38.66 -0.38 -8.33 16 11 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 12 C -0.37 -8.41 9.34 -38.87 -0.36 -8.78 16 13 C 0.41 9.83 7.65 -155.31 -1.19 8.64 16 14 N -0.74 -14.00 5.21 -60.40 -0.31 -14.32 16 15 C 0.12 1.81 4.06 -4.04 -0.02 1.80 16 16 C 0.13 1.58 0.72 -90.44 -0.07 1.52 16 17 O -0.56 -7.34 11.95 -35.23 -0.42 -7.76 16 18 C -0.18 -2.22 4.84 -26.59 -0.13 -2.35 16 19 C 0.07 0.75 6.69 37.21 0.25 1.00 16 20 O -0.39 -4.84 10.77 -35.23 -0.38 -5.22 16 21 C 0.07 0.70 6.69 37.21 0.25 0.95 16 22 C -0.14 -1.52 5.15 -26.59 -0.14 -1.66 16 23 N -0.53 -14.41 7.89 -10.33 -0.08 -14.49 16 24 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 25 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 26 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 28 H 0.39 7.20 6.53 -40.82 -0.27 6.94 16 29 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 30 H 0.06 0.90 7.92 -51.92 -0.41 0.49 16 31 H 0.38 4.66 8.20 45.56 0.37 5.03 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.07 6.71 -51.92 -0.35 0.72 16 34 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -30.06 317.04 -8.72 -38.77 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -4.73 Total: 13.91 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.18 Total: -11.12 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.24 Total: -46.87 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.80 Total: -12.97 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.06 -8.72 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116664537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.910 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds